HEADER OXIDOREDUCTASE 14-MAR-13 4JN9 TITLE CRYSTAL STRUCTURE OF THE DEPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 STRAIN: NO. 968; SOURCE 5 GENE: DEPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DISULFIDE BOND FORMATION, FK228, DEPSIPEPTIDE, FAD-DEPENDENT KEYWDS 2 OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,C.WANG,Z.M.ZHANG,J.H.ZHOU,E.CHENG REVDAT 4 20-SEP-23 4JN9 1 REMARK SEQADV REVDAT 3 15-NOV-17 4JN9 1 REMARK REVDAT 2 15-OCT-14 4JN9 1 AUTHOR REVDAT 1 09-APR-14 4JN9 0 JRNL AUTH J.LI,C.WANG,Z.M.ZHANG,Y.Q.CHENG,J.ZHOU JRNL TITL THE STRUCTURAL BASIS OF AN NADP+-INDEPENDENT DITHIOL OXIDASE JRNL TITL 2 IN FK228 BIOSYNTHESIS. JRNL REF SCI REP V. 4 4145 2014 JRNL REFN ESSN 2045-2322 JRNL PMID 24553401 JRNL DOI 10.1038/SREP04145 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5263 - 5.0665 1.00 2863 164 0.1668 0.1794 REMARK 3 2 5.0665 - 4.0228 1.00 2733 145 0.1347 0.1513 REMARK 3 3 4.0228 - 3.5147 1.00 2711 142 0.1491 0.1800 REMARK 3 4 3.5147 - 3.1935 1.00 2674 141 0.1640 0.2047 REMARK 3 5 3.1935 - 2.9647 1.00 2645 151 0.1583 0.1828 REMARK 3 6 2.9647 - 2.7899 1.00 2649 129 0.1686 0.1985 REMARK 3 7 2.7899 - 2.6503 1.00 2660 165 0.1697 0.2263 REMARK 3 8 2.6503 - 2.5349 1.00 2628 137 0.1723 0.2282 REMARK 3 9 2.5349 - 2.4373 1.00 2633 152 0.1681 0.2091 REMARK 3 10 2.4373 - 2.3533 1.00 2651 140 0.1644 0.2181 REMARK 3 11 2.3533 - 2.2797 1.00 2625 140 0.1715 0.2110 REMARK 3 12 2.2797 - 2.2145 1.00 2610 149 0.1665 0.2146 REMARK 3 13 2.2145 - 2.1562 1.00 2623 141 0.1687 0.2167 REMARK 3 14 2.1562 - 2.1036 1.00 2610 140 0.1700 0.2005 REMARK 3 15 2.1036 - 2.0558 1.00 2612 127 0.1718 0.2276 REMARK 3 16 2.0558 - 2.0121 1.00 2614 158 0.1709 0.2073 REMARK 3 17 2.0121 - 1.9718 1.00 2636 127 0.1755 0.2256 REMARK 3 18 1.9718 - 1.9346 1.00 2598 133 0.1844 0.2402 REMARK 3 19 1.9346 - 1.9001 1.00 2636 120 0.1982 0.2515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4847 REMARK 3 ANGLE : 1.124 6583 REMARK 3 CHIRALITY : 0.075 701 REMARK 3 PLANARITY : 0.006 874 REMARK 3 DIHEDRAL : 19.052 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 0.2M (NH4)2SO4, REMARK 280 11.75 % PEG4000, MICROSEEDING, TEMPERATURE 293K, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.47167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.94333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 124.94333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.47167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 MET A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 SER A 31 REMARK 465 PHE A 32 REMARK 465 PRO A 33 REMARK 465 ILE A 34 REMARK 465 LYS A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 MET A 40 REMARK 465 ASN A 41 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 MET B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 ARG B 26 REMARK 465 ALA B 27 REMARK 465 PRO B 28 REMARK 465 SER B 29 REMARK 465 HIS B 30 REMARK 465 SER B 31 REMARK 465 PHE B 32 REMARK 465 PRO B 33 REMARK 465 ILE B 34 REMARK 465 LYS B 35 REMARK 465 ASP B 36 REMARK 465 SER B 37 REMARK 465 ARG B 38 REMARK 465 PRO B 39 REMARK 465 MET B 40 REMARK 465 ASN B 41 REMARK 465 SER B 42 REMARK 465 GLU B 43 REMARK 465 THR B 44 REMARK 465 SER B 45 REMARK 465 PRO B 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 187 O HOH B 696 2.09 REMARK 500 O HOH A 694 O HOH A 697 2.12 REMARK 500 O HOH A 685 O HOH A 686 2.14 REMARK 500 O HOH A 649 O HOH B 656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 697 O HOH B 593 6665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 177 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -148.45 -97.24 REMARK 500 ALA A 153 40.25 -146.82 REMARK 500 SER A 195 23.91 -145.82 REMARK 500 ASP A 247 -142.28 55.06 REMARK 500 ALA A 249 48.36 -160.90 REMARK 500 SER B 57 -147.54 -95.74 REMARK 500 ALA B 153 40.61 -150.72 REMARK 500 SER B 195 26.79 -171.24 REMARK 500 PHE B 220 153.40 175.14 REMARK 500 ARG B 233 -7.15 -144.00 REMARK 500 ARG B 233 -11.17 -145.66 REMARK 500 ASP B 247 -136.98 48.78 REMARK 500 ALA B 249 38.69 -155.47 REMARK 500 ARG B 315 51.80 -104.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JNA RELATED DB: PDB DBREF 4JN9 A 22 340 UNP A4ZPY8 A4ZPY8_CHRVL 1 319 DBREF 4JN9 B 22 340 UNP A4ZPY8 A4ZPY8_CHRVL 1 319 SEQADV 4JN9 MET A 1 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY A 2 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER A 3 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER A 4 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 5 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 6 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 7 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 8 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 9 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 10 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER A 11 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER A 12 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY A 13 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 LEU A 14 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 VAL A 15 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 PRO A 16 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 ARG A 17 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY A 18 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER A 19 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS A 20 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 MET A 21 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 MET B 1 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY B 2 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER B 3 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER B 4 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 5 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 6 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 7 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 8 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 9 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 10 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER B 11 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER B 12 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY B 13 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 LEU B 14 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 VAL B 15 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 PRO B 16 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 ARG B 17 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 GLY B 18 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 SER B 19 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 HIS B 20 UNP A4ZPY8 EXPRESSION TAG SEQADV 4JN9 MET B 21 UNP A4ZPY8 EXPRESSION TAG SEQRES 1 A 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 340 LEU VAL PRO ARG GLY SER HIS MET MET LYS ALA ALA ARG SEQRES 3 A 340 ALA PRO SER HIS SER PHE PRO ILE LYS ASP SER ARG PRO SEQRES 4 A 340 MET ASN SER GLU THR SER PRO MET LEU PHE ASP VAL ILE SEQRES 5 A 340 VAL ILE GLY GLY SER HIS ALA GLY GLN SER ALA ALA LEU SEQRES 6 A 340 GLN ILE ALA ARG ALA ARG ARG ARG VAL LEU VAL ILE ASP SEQRES 7 A 340 ALA GLY ALA ARG ARG ASN ARG PHE ALA SER GLN SER HIS SEQRES 8 A 340 GLY VAL ILE GLY GLN ASP GLY ARG SER PRO ASP ALA ILE SEQRES 9 A 340 ALA ALA ASP GLY LYS ALA GLN LEU LEU ALA TYR PRO ASN SEQRES 10 A 340 ALA GLN TRP ARG GLU ASP SER VAL VAL ARG ALA GLU ARG SEQRES 11 A 340 SER ASP ALA GLY TYR THR LEU ILE CYS ALA SER GLY GLN SEQRES 12 A 340 HIS TYR ARG ALA CYS GLN LEU VAL LEU ALA PHE GLY VAL SEQRES 13 A 340 VAL ASP GLU LEU PRO GLU LEU GLU GLY LEU GLU GLU ARG SEQRES 14 A 340 TRP GLY GLU SER VAL PHE HIS CYS PRO TYR CYS HIS GLY SEQRES 15 A 340 TYR GLU LEU ASP GLY GLY ARG ILE GLY VAL LEU GLY SER SEQRES 16 A 340 GLY PRO LEU SER TYR LEU SER ALA MET LEU MET PRO GLU SEQRES 17 A 340 TRP GLY GLN THR VAL PHE LEU THR ASP ALA SER PHE GLU SEQRES 18 A 340 PRO ASP GLU GLU GLN ARG GLU ALA LEU ALA ARG ARG GLY SEQRES 19 A 340 VAL GLU ILE VAL ARG ASP ARG ILE ALA ARG ILE VAL ASP SEQRES 20 A 340 ARG ALA THR VAL GLU LEU ALA ASP GLY ARG ARG ILE ALA SEQRES 21 A 340 PHE ASP GLY LEU PHE THR MET ASN ARG MET ARG LEU SER SEQRES 22 A 340 SER PRO VAL ALA GLU GLN LEU GLY CYS ALA ILE GLU GLU SEQRES 23 A 340 GLY PRO LEU GLY PRO TYR VAL ARG THR ASP ASP ALA MET SEQRES 24 A 340 GLU THR SER THR PRO GLY VAL PHE ALA CYS GLY ASP ILE SEQRES 25 A 340 THR HIS ARG GLY GLY THR VAL ALA LEU ALA ILE GLY ASN SEQRES 26 A 340 GLY ALA LEU ALA GLY ILE ALA ALA HIS ARG LYS LEU VAL SEQRES 27 A 340 PHE GLY SEQRES 1 B 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 340 LEU VAL PRO ARG GLY SER HIS MET MET LYS ALA ALA ARG SEQRES 3 B 340 ALA PRO SER HIS SER PHE PRO ILE LYS ASP SER ARG PRO SEQRES 4 B 340 MET ASN SER GLU THR SER PRO MET LEU PHE ASP VAL ILE SEQRES 5 B 340 VAL ILE GLY GLY SER HIS ALA GLY GLN SER ALA ALA LEU SEQRES 6 B 340 GLN ILE ALA ARG ALA ARG ARG ARG VAL LEU VAL ILE ASP SEQRES 7 B 340 ALA GLY ALA ARG ARG ASN ARG PHE ALA SER GLN SER HIS SEQRES 8 B 340 GLY VAL ILE GLY GLN ASP GLY ARG SER PRO ASP ALA ILE SEQRES 9 B 340 ALA ALA ASP GLY LYS ALA GLN LEU LEU ALA TYR PRO ASN SEQRES 10 B 340 ALA GLN TRP ARG GLU ASP SER VAL VAL ARG ALA GLU ARG SEQRES 11 B 340 SER ASP ALA GLY TYR THR LEU ILE CYS ALA SER GLY GLN SEQRES 12 B 340 HIS TYR ARG ALA CYS GLN LEU VAL LEU ALA PHE GLY VAL SEQRES 13 B 340 VAL ASP GLU LEU PRO GLU LEU GLU GLY LEU GLU GLU ARG SEQRES 14 B 340 TRP GLY GLU SER VAL PHE HIS CYS PRO TYR CYS HIS GLY SEQRES 15 B 340 TYR GLU LEU ASP GLY GLY ARG ILE GLY VAL LEU GLY SER SEQRES 16 B 340 GLY PRO LEU SER TYR LEU SER ALA MET LEU MET PRO GLU SEQRES 17 B 340 TRP GLY GLN THR VAL PHE LEU THR ASP ALA SER PHE GLU SEQRES 18 B 340 PRO ASP GLU GLU GLN ARG GLU ALA LEU ALA ARG ARG GLY SEQRES 19 B 340 VAL GLU ILE VAL ARG ASP ARG ILE ALA ARG ILE VAL ASP SEQRES 20 B 340 ARG ALA THR VAL GLU LEU ALA ASP GLY ARG ARG ILE ALA SEQRES 21 B 340 PHE ASP GLY LEU PHE THR MET ASN ARG MET ARG LEU SER SEQRES 22 B 340 SER PRO VAL ALA GLU GLN LEU GLY CYS ALA ILE GLU GLU SEQRES 23 B 340 GLY PRO LEU GLY PRO TYR VAL ARG THR ASP ASP ALA MET SEQRES 24 B 340 GLU THR SER THR PRO GLY VAL PHE ALA CYS GLY ASP ILE SEQRES 25 B 340 THR HIS ARG GLY GLY THR VAL ALA LEU ALA ILE GLY ASN SEQRES 26 B 340 GLY ALA LEU ALA GLY ILE ALA ALA HIS ARG LYS LEU VAL SEQRES 27 B 340 PHE GLY HET FAD A 401 53 HET CL A 402 1 HET MG A 403 1 HET PO4 A 404 5 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET FAD B 401 53 HET CL B 402 1 HET EDO B 403 4 HET EDO B 404 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CL 2(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 PO4 O4 P 3- FORMUL 7 EDO 5(C2 H6 O2) FORMUL 14 HOH *408(H2 O) HELIX 1 1 SER A 57 ALA A 70 1 14 HELIX 2 2 SER A 100 ALA A 114 1 15 HELIX 3 3 LEU A 166 TRP A 170 5 5 HELIX 4 4 CYS A 177 GLY A 182 1 6 HELIX 5 5 TYR A 183 ASP A 186 5 4 HELIX 6 6 PRO A 197 MET A 206 1 10 HELIX 7 7 PRO A 207 TRP A 209 5 3 HELIX 8 8 ASP A 223 GLY A 234 1 12 HELIX 9 9 PRO A 275 LEU A 280 1 6 HELIX 10 10 GLY A 310 THR A 313 5 4 HELIX 11 11 THR A 318 GLY A 340 1 23 HELIX 12 12 SER B 57 ALA B 70 1 14 HELIX 13 13 SER B 100 ALA B 114 1 15 HELIX 14 14 LEU B 166 TRP B 170 5 5 HELIX 15 15 CYS B 177 GLY B 182 1 6 HELIX 16 16 TYR B 183 ASP B 186 5 4 HELIX 17 17 GLY B 196 MET B 206 1 11 HELIX 18 18 ASP B 223 ARG B 232 1 10 HELIX 19 19 PRO B 275 LEU B 280 1 6 HELIX 20 20 GLY B 310 THR B 313 5 4 HELIX 21 21 THR B 318 GLY B 340 1 23 SHEET 1 A 6 ALA A 118 GLU A 122 0 SHEET 2 A 6 VAL A 74 ASP A 78 1 N ASP A 78 O ARG A 121 SHEET 3 A 6 PHE A 49 ILE A 54 1 N VAL A 53 O LEU A 75 SHEET 4 A 6 HIS A 144 LEU A 152 1 O VAL A 151 N ILE A 54 SHEET 5 A 6 GLY A 134 CYS A 139 -1 N LEU A 137 O TYR A 145 SHEET 6 A 6 VAL A 125 SER A 131 -1 N SER A 131 O GLY A 134 SHEET 1 B 5 ALA A 118 GLU A 122 0 SHEET 2 B 5 VAL A 74 ASP A 78 1 N ASP A 78 O ARG A 121 SHEET 3 B 5 PHE A 49 ILE A 54 1 N VAL A 53 O LEU A 75 SHEET 4 B 5 HIS A 144 LEU A 152 1 O VAL A 151 N ILE A 54 SHEET 5 B 5 VAL A 306 ALA A 308 1 O PHE A 307 N LEU A 152 SHEET 1 C 2 VAL A 156 GLU A 159 0 SHEET 2 C 2 ARG A 269 LEU A 272 -1 O ARG A 271 N VAL A 157 SHEET 1 D 5 VAL A 174 PHE A 175 0 SHEET 2 D 5 GLY A 263 THR A 266 1 O LEU A 264 N PHE A 175 SHEET 3 D 5 ARG A 189 LEU A 193 1 N LEU A 193 O PHE A 265 SHEET 4 D 5 GLN A 211 LEU A 215 1 O GLN A 211 N ILE A 190 SHEET 5 D 5 GLU A 236 VAL A 238 1 O GLU A 236 N PHE A 214 SHEET 1 E 3 ILE A 242 VAL A 246 0 SHEET 2 E 3 THR A 250 LEU A 253 -1 O GLU A 252 N ALA A 243 SHEET 3 E 3 ARG A 258 ALA A 260 -1 O ILE A 259 N VAL A 251 SHEET 1 F 2 ILE A 284 GLY A 287 0 SHEET 2 F 2 GLY A 290 VAL A 293 -1 O TYR A 292 N GLU A 285 SHEET 1 G 6 ALA B 118 GLU B 122 0 SHEET 2 G 6 VAL B 74 ASP B 78 1 N VAL B 76 O ARG B 121 SHEET 3 G 6 LEU B 48 ILE B 54 1 N VAL B 53 O LEU B 75 SHEET 4 G 6 HIS B 144 LEU B 152 1 O VAL B 151 N ILE B 54 SHEET 5 G 6 GLY B 134 CYS B 139 -1 N TYR B 135 O ALA B 147 SHEET 6 G 6 VAL B 125 SER B 131 -1 N GLU B 129 O THR B 136 SHEET 1 H 5 ALA B 118 GLU B 122 0 SHEET 2 H 5 VAL B 74 ASP B 78 1 N VAL B 76 O ARG B 121 SHEET 3 H 5 LEU B 48 ILE B 54 1 N VAL B 53 O LEU B 75 SHEET 4 H 5 HIS B 144 LEU B 152 1 O VAL B 151 N ILE B 54 SHEET 5 H 5 VAL B 306 ALA B 308 1 O PHE B 307 N LEU B 152 SHEET 1 I 2 VAL B 156 GLU B 159 0 SHEET 2 I 2 ARG B 269 LEU B 272 -1 O ARG B 271 N VAL B 157 SHEET 1 J 5 VAL B 174 PHE B 175 0 SHEET 2 J 5 GLY B 263 THR B 266 1 O LEU B 264 N PHE B 175 SHEET 3 J 5 GLY B 187 LEU B 193 1 N GLY B 191 O PHE B 265 SHEET 4 J 5 GLY B 210 LEU B 215 1 O VAL B 213 N VAL B 192 SHEET 5 J 5 GLU B 236 VAL B 238 1 O GLU B 236 N PHE B 214 SHEET 1 K 3 ILE B 242 VAL B 246 0 SHEET 2 K 3 ALA B 249 LEU B 253 -1 O GLU B 252 N ARG B 244 SHEET 3 K 3 ARG B 258 PHE B 261 -1 O ILE B 259 N VAL B 251 SHEET 1 L 2 ILE B 284 GLY B 287 0 SHEET 2 L 2 GLY B 290 VAL B 293 -1 O TYR B 292 N GLU B 285 SSBOND 1 CYS A 177 CYS A 180 1555 1555 2.05 SSBOND 2 CYS B 177 CYS B 180 1555 1555 2.07 LINK OG SER A 90 MG MG A 403 1555 1555 2.91 SITE 1 AC1 39 ILE A 54 GLY A 55 SER A 57 HIS A 58 SITE 2 AC1 39 ALA A 59 ILE A 77 ASP A 78 ALA A 79 SITE 3 AC1 39 GLY A 80 ALA A 81 ARG A 83 ASN A 84 SITE 4 AC1 39 SER A 90 HIS A 91 ASP A 123 SER A 124 SITE 5 AC1 39 VAL A 125 PHE A 154 GLY A 155 ASP A 158 SITE 6 AC1 39 CYS A 180 HIS A 181 SER A 273 GLY A 310 SITE 7 AC1 39 ASP A 311 GLY A 317 THR A 318 VAL A 319 SITE 8 AC1 39 CL A 402 EDO A 407 HOH A 501 HOH A 502 SITE 9 AC1 39 HOH A 507 HOH A 514 HOH A 517 HOH A 537 SITE 10 AC1 39 HOH A 560 HOH A 562 HOH A 610 SITE 1 AC2 3 HIS A 176 CYS A 177 FAD A 401 SITE 1 AC3 5 SER A 90 HIS A 91 GLY A 92 VAL A 93 SITE 2 AC3 5 GLN A 96 SITE 1 AC4 4 VAL A 238 ARG A 239 ASP A 240 ARG A 257 SITE 1 AC5 7 GLN A 66 HOH A 690 HIS B 91 CYS B 180 SITE 2 AC5 7 FAD B 401 HOH B 508 HOH B 659 SITE 1 AC6 3 ASP A 158 GLU A 167 HOH A 521 SITE 1 AC7 39 EDO A 405 ILE B 54 GLY B 55 SER B 57 SITE 2 AC7 39 HIS B 58 ALA B 59 ILE B 77 ASP B 78 SITE 3 AC7 39 ALA B 79 GLY B 80 ALA B 81 ARG B 83 SITE 4 AC7 39 ASN B 84 SER B 90 HIS B 91 ASP B 123 SITE 5 AC7 39 SER B 124 VAL B 125 PHE B 154 GLY B 155 SITE 6 AC7 39 ASP B 158 CYS B 180 HIS B 181 SER B 273 SITE 7 AC7 39 GLY B 310 ASP B 311 GLY B 317 THR B 318 SITE 8 AC7 39 VAL B 319 CL B 402 HOH B 501 HOH B 503 SITE 9 AC7 39 HOH B 508 HOH B 509 HOH B 523 HOH B 549 SITE 10 AC7 39 HOH B 551 HOH B 552 HOH B 628 SITE 1 AC8 7 HIS A 91 GLY A 92 CYS A 180 THR A 318 SITE 2 AC8 7 FAD A 401 HOH A 514 GLN B 66 SITE 1 AC9 4 HIS B 176 CYS B 177 HIS B 181 FAD B 401 SITE 1 BC1 7 ALA B 87 SER B 88 GLN B 89 GLY B 171 SITE 2 BC1 7 GLU B 172 HOH B 611 HOH B 677 SITE 1 BC2 6 ILE A 94 GLY A 95 GLN A 96 ILE B 94 SITE 2 BC2 6 GLY B 95 GLN B 96 CRYST1 78.120 78.120 187.415 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012801 0.007391 0.000000 0.00000 SCALE2 0.000000 0.014781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005336 0.00000