HEADER VIRAL PROTEIN 15-MAR-13 4JNH TITLE A UNIQUE SPUMAVIRUS GAG N-TERMINAL DOMAIN WITH FUNCTIONAL PROPERTIES TITLE 2 OF ORTHORETROVIRAL MATRIX AND CAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PR71GAG, GAG PROTEIN, P68GAG, P3, P3GAG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU); SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET47B KEYWDS GAG, COILED-COIL, VIRAL PROTEIN, ENV EXPDTA X-RAY DIFFRACTION AUTHOR I.A.TAYLOR,D.C.GOLDSTONE,T.G.FLOWER,N.J.BALL REVDAT 1 29-MAY-13 4JNH 0 JRNL AUTH D.C.GOLDSTONE,T.G.FLOWER,N.J.BALL,M.SANZ-RAMOS,M.W.YAP, JRNL AUTH 2 R.W.OGRODOWICZ,N.STANKE,J.REH,D.LINDEMANN,J.P.STOYE, JRNL AUTH 3 I.A.TAYLOR JRNL TITL A UNIQUE SPUMAVIRUS GAG N-TERMINAL DOMAIN WITH FUNCTIONAL JRNL TITL 2 PROPERTIES OF ORTHORETROVIRAL MATRIX AND CAPSID. JRNL REF PLOS PATHOG. V. 9 03376 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23675305 JRNL DOI 10.1371/JOURNAL.PPAT.1003376 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 30630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6834 - 5.3236 0.97 2611 150 0.1930 0.2132 REMARK 3 2 5.3236 - 4.2334 0.99 2667 143 0.1300 0.1816 REMARK 3 3 4.2334 - 3.7006 1.00 2705 145 0.1288 0.1720 REMARK 3 4 3.7006 - 3.3633 0.99 2638 151 0.1687 0.2031 REMARK 3 5 3.3633 - 3.1228 0.99 2662 146 0.1763 0.2559 REMARK 3 6 3.1228 - 2.9390 0.99 2610 158 0.1935 0.2740 REMARK 3 7 2.9390 - 2.7921 0.98 2667 143 0.1988 0.3010 REMARK 3 8 2.7921 - 2.6707 0.98 2675 118 0.2084 0.2653 REMARK 3 9 2.6707 - 2.5680 0.98 2668 107 0.2058 0.3038 REMARK 3 10 2.5680 - 2.4795 0.97 2643 105 0.2012 0.2894 REMARK 3 11 2.4795 - 2.4020 0.96 2566 152 0.1778 0.2576 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 21.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.01110 REMARK 3 B22 (A**2) : 5.16340 REMARK 3 B33 (A**2) : -3.15230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35640 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2870 REMARK 3 ANGLE : 1.044 3902 REMARK 3 CHIRALITY : 0.065 431 REMARK 3 PLANARITY : 0.004 525 REMARK 3 DIHEDRAL : 16.460 1120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 9:29) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7425 20.2593 49.5964 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.0726 REMARK 3 T33: 0.1121 T12: -0.0449 REMARK 3 T13: 0.0009 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.0050 L22: 0.0007 REMARK 3 L33: 0.0084 L12: -0.0002 REMARK 3 L13: 0.0056 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0140 S13: -0.0692 REMARK 3 S21: -0.0122 S22: 0.0408 S23: -0.0098 REMARK 3 S31: 0.0158 S32: -0.0475 S33: 0.0631 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 30:80) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2684 29.3513 45.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0117 REMARK 3 T33: -0.0019 T12: -0.0071 REMARK 3 T13: -0.0050 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 0.1862 L22: 0.1937 REMARK 3 L33: 0.2768 L12: -0.0791 REMARK 3 L13: -0.1115 L23: 0.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.1125 S13: -0.0722 REMARK 3 S21: 0.0547 S22: -0.0751 S23: 0.0207 REMARK 3 S31: -0.0052 S32: -0.1296 S33: -0.2043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 81:85) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9932 33.4566 56.0333 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.0916 REMARK 3 T33: 0.2518 T12: -0.0100 REMARK 3 T13: 0.0507 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 0.0668 L22: 0.0447 REMARK 3 L33: 0.0332 L12: -0.0540 REMARK 3 L13: -0.0085 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.0165 S13: -0.0505 REMARK 3 S21: 0.0035 S22: 0.0276 S23: 0.0130 REMARK 3 S31: -0.0152 S32: -0.0275 S33: 0.0146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 86:156) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4163 38.4578 50.6021 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.0182 REMARK 3 T33: 0.0382 T12: 0.0016 REMARK 3 T13: 0.0168 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2760 L22: 0.0830 REMARK 3 L33: 0.1474 L12: 0.0354 REMARK 3 L13: -0.0332 L23: -0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0307 S13: -0.1740 REMARK 3 S21: -0.0439 S22: -0.0429 S23: -0.0101 REMARK 3 S31: 0.0674 S32: 0.0598 S33: -0.0606 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 157:179) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6581 51.3221 77.7772 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1679 REMARK 3 T33: 0.0071 T12: -0.0269 REMARK 3 T13: 0.0635 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.0599 L22: 0.0206 REMARK 3 L33: 0.0008 L12: 0.0310 REMARK 3 L13: 0.0011 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.1115 S13: -0.0083 REMARK 3 S21: 0.0982 S22: -0.0147 S23: 0.0498 REMARK 3 S31: 0.0091 S32: -0.0138 S33: 0.0547 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain B and resid 7:28) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7838 71.4700 47.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.0652 REMARK 3 T33: 0.2451 T12: -0.0481 REMARK 3 T13: -0.0125 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.0690 L22: 0.0445 REMARK 3 L33: 0.2173 L12: -0.0555 REMARK 3 L13: 0.0357 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: -0.0135 S13: 0.0153 REMARK 3 S21: 0.0226 S22: 0.0274 S23: 0.0860 REMARK 3 S31: -0.0401 S32: 0.0133 S33: 0.0256 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain B and resid 29:53) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5261 62.8526 50.1193 REMARK 3 T TENSOR REMARK 3 T11: -0.0543 T22: 0.0567 REMARK 3 T33: 0.0669 T12: 0.0546 REMARK 3 T13: -0.0433 T23: 0.0910 REMARK 3 L TENSOR REMARK 3 L11: 0.0236 L22: 0.1054 REMARK 3 L33: 0.0835 L12: -0.0074 REMARK 3 L13: 0.0426 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0098 S13: 0.0551 REMARK 3 S21: 0.0201 S22: -0.0066 S23: 0.0490 REMARK 3 S31: -0.0213 S32: 0.0497 S33: -0.1762 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain B and resid 54:82) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4830 63.0911 41.2969 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: 0.1477 REMARK 3 T33: 0.1265 T12: -0.0145 REMARK 3 T13: 0.0359 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.1678 REMARK 3 L33: 0.1459 L12: 0.0105 REMARK 3 L13: -0.0005 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.0937 S13: 0.0842 REMARK 3 S21: -0.0148 S22: -0.1227 S23: -0.0933 REMARK 3 S31: 0.0426 S32: 0.1026 S33: -0.2266 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain B and resid 83:158) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0010 54.1900 51.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0301 REMARK 3 T33: 0.0516 T12: -0.0091 REMARK 3 T13: 0.0380 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.2282 L22: 0.0121 REMARK 3 L33: 0.0736 L12: -0.0144 REMARK 3 L13: 0.0227 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0046 S13: 0.1409 REMARK 3 S21: 0.0089 S22: -0.0242 S23: -0.0131 REMARK 3 S31: 0.0142 S32: 0.0371 S33: -0.0705 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain B and resid 159:179) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2157 42.4858 79.8181 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.1886 REMARK 3 T33: 0.0413 T12: -0.1093 REMARK 3 T13: 0.0164 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.0649 REMARK 3 L33: 0.0904 L12: 0.0036 REMARK 3 L13: -0.0081 L23: -0.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.0443 S13: 0.0100 REMARK 3 S21: 0.0897 S22: -0.0944 S23: -0.0206 REMARK 3 S31: 0.0443 S32: 0.0129 S33: -0.0303 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-13. REMARK 100 THE RCSB ID CODE IS RCSB078267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML SOLUTION OF PFV-GAG-NTD IN REMARK 280 150MM NACL, 5% GLYCEROL, 10MM TRIS-HCL, PH 8.0 WAS MIXED WITH AN REMARK 280 EQUAL VOLUME OF CRYSTALLISATION SOLUTION CONTAINING 16% PEG 6000 REMARK 280 (W/V), 12% ETHYLENE GLYCOL, 0.03M MGCL2 HEXAHYDRATE , VAPOR REMARK 280 DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.36450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 ALA A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 ALA A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 MSE B -19 REMARK 465 ALA B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 ALA B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 GLU B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ASN B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 75 40.89 -82.81 REMARK 500 ASN B 63 18.77 55.20 REMARK 500 GLN B 75 47.24 -72.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JMR RELATED DB: PDB REMARK 900 HPFV GAG BOUND TO ENV LEADER PEPTIDE DBREF 4JNH A 1 179 UNP P14349 GAG_FOAMV 1 179 DBREF 4JNH B 1 179 UNP P14349 GAG_FOAMV 1 179 SEQADV 4JNH MSE A -19 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA A -18 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -17 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -16 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -15 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -14 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -13 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS A -12 UNP P14349 EXPRESSION TAG SEQADV 4JNH SER A -11 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA A -10 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA A -9 UNP P14349 EXPRESSION TAG SEQADV 4JNH LEU A -8 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLU A -7 UNP P14349 EXPRESSION TAG SEQADV 4JNH VAL A -6 UNP P14349 EXPRESSION TAG SEQADV 4JNH LEU A -5 UNP P14349 EXPRESSION TAG SEQADV 4JNH PHE A -4 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLN A -3 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLY A -2 UNP P14349 EXPRESSION TAG SEQADV 4JNH PRO A -1 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLY A 0 UNP P14349 EXPRESSION TAG SEQADV 4JNH ASN A 60 UNP P14349 ASP 60 CONFLICT SEQADV 4JNH MSE B -19 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA B -18 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -17 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -16 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -15 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -14 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -13 UNP P14349 EXPRESSION TAG SEQADV 4JNH HIS B -12 UNP P14349 EXPRESSION TAG SEQADV 4JNH SER B -11 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA B -10 UNP P14349 EXPRESSION TAG SEQADV 4JNH ALA B -9 UNP P14349 EXPRESSION TAG SEQADV 4JNH LEU B -8 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLU B -7 UNP P14349 EXPRESSION TAG SEQADV 4JNH VAL B -6 UNP P14349 EXPRESSION TAG SEQADV 4JNH LEU B -5 UNP P14349 EXPRESSION TAG SEQADV 4JNH PHE B -4 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLN B -3 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLY B -2 UNP P14349 EXPRESSION TAG SEQADV 4JNH PRO B -1 UNP P14349 EXPRESSION TAG SEQADV 4JNH GLY B 0 UNP P14349 EXPRESSION TAG SEQADV 4JNH ASN B 60 UNP P14349 ASP 60 CONFLICT SEQRES 1 A 199 MSE ALA HIS HIS HIS HIS HIS HIS SER ALA ALA LEU GLU SEQRES 2 A 199 VAL LEU PHE GLN GLY PRO GLY MSE ALA SER GLY SER ASN SEQRES 3 A 199 VAL GLU GLU TYR GLU LEU ASP VAL GLU ALA LEU VAL VAL SEQRES 4 A 199 ILE LEU ARG ASP ARG ASN ILE PRO ARG ASN PRO LEU HIS SEQRES 5 A 199 GLY GLU VAL ILE GLY LEU ARG LEU THR GLU GLY TRP TRP SEQRES 6 A 199 GLY GLN ILE GLU ARG PHE GLN MSE VAL ARG LEU ILE LEU SEQRES 7 A 199 GLN ASN ASP ASP ASN GLU PRO LEU GLN ARG PRO ARG TYR SEQRES 8 A 199 GLU VAL ILE GLN ARG ALA VAL ASN PRO HIS THR MSE PHE SEQRES 9 A 199 MSE ILE SER GLY PRO LEU ALA GLU LEU GLN LEU ALA PHE SEQRES 10 A 199 GLN ASP LEU ASP LEU PRO GLU GLY PRO LEU ARG PHE GLY SEQRES 11 A 199 PRO LEU ALA ASN GLY HIS TYR VAL GLN GLY ASP PRO TYR SEQRES 12 A 199 SER SER SER TYR ARG PRO VAL THR MSE ALA GLU THR ALA SEQRES 13 A 199 GLN MSE THR ARG ASP GLU LEU GLU ASP VAL LEU ASN THR SEQRES 14 A 199 GLN SER GLU ILE GLU ILE GLN MSE ILE ASN LEU LEU GLU SEQRES 15 A 199 LEU TYR GLU VAL GLU THR ARG ALA LEU ARG ARG GLN LEU SEQRES 16 A 199 ALA GLU ARG SER SEQRES 1 B 199 MSE ALA HIS HIS HIS HIS HIS HIS SER ALA ALA LEU GLU SEQRES 2 B 199 VAL LEU PHE GLN GLY PRO GLY MSE ALA SER GLY SER ASN SEQRES 3 B 199 VAL GLU GLU TYR GLU LEU ASP VAL GLU ALA LEU VAL VAL SEQRES 4 B 199 ILE LEU ARG ASP ARG ASN ILE PRO ARG ASN PRO LEU HIS SEQRES 5 B 199 GLY GLU VAL ILE GLY LEU ARG LEU THR GLU GLY TRP TRP SEQRES 6 B 199 GLY GLN ILE GLU ARG PHE GLN MSE VAL ARG LEU ILE LEU SEQRES 7 B 199 GLN ASN ASP ASP ASN GLU PRO LEU GLN ARG PRO ARG TYR SEQRES 8 B 199 GLU VAL ILE GLN ARG ALA VAL ASN PRO HIS THR MSE PHE SEQRES 9 B 199 MSE ILE SER GLY PRO LEU ALA GLU LEU GLN LEU ALA PHE SEQRES 10 B 199 GLN ASP LEU ASP LEU PRO GLU GLY PRO LEU ARG PHE GLY SEQRES 11 B 199 PRO LEU ALA ASN GLY HIS TYR VAL GLN GLY ASP PRO TYR SEQRES 12 B 199 SER SER SER TYR ARG PRO VAL THR MSE ALA GLU THR ALA SEQRES 13 B 199 GLN MSE THR ARG ASP GLU LEU GLU ASP VAL LEU ASN THR SEQRES 14 B 199 GLN SER GLU ILE GLU ILE GLN MSE ILE ASN LEU LEU GLU SEQRES 15 B 199 LEU TYR GLU VAL GLU THR ARG ALA LEU ARG ARG GLN LEU SEQRES 16 B 199 ALA GLU ARG SER MODRES 4JNH MSE A 53 MET SELENOMETHIONINE MODRES 4JNH MSE A 83 MET SELENOMETHIONINE MODRES 4JNH MSE A 85 MET SELENOMETHIONINE MODRES 4JNH MSE A 132 MET SELENOMETHIONINE MODRES 4JNH MSE A 138 MET SELENOMETHIONINE MODRES 4JNH MSE A 157 MET SELENOMETHIONINE MODRES 4JNH MSE B 53 MET SELENOMETHIONINE MODRES 4JNH MSE B 83 MET SELENOMETHIONINE MODRES 4JNH MSE B 85 MET SELENOMETHIONINE MODRES 4JNH MSE B 132 MET SELENOMETHIONINE MODRES 4JNH MSE B 138 MET SELENOMETHIONINE MODRES 4JNH MSE B 157 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 83 8 HET MSE A 85 8 HET MSE A 132 8 HET MSE A 138 8 HET MSE A 157 8 HET MSE B 53 8 HET MSE B 83 8 HET MSE B 85 13 HET MSE B 132 13 HET MSE B 138 8 HET MSE B 157 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *171(H2 O) HELIX 1 1 ASP A 13 ARG A 24 1 12 HELIX 2 2 PRO A 89 GLN A 94 1 6 HELIX 3 3 GLU A 104 ALA A 113 5 10 HELIX 4 4 ASP A 121 TYR A 127 1 7 HELIX 5 5 THR A 131 ALA A 136 1 6 HELIX 6 6 THR A 139 ARG A 178 1 40 HELIX 7 7 ASP B 13 ARG B 24 1 12 HELIX 8 8 PRO B 89 LEU B 95 1 7 HELIX 9 9 GLU B 104 ALA B 113 5 10 HELIX 10 10 ASP B 121 TYR B 127 1 7 HELIX 11 11 THR B 131 ALA B 136 1 6 HELIX 12 12 THR B 139 GLU B 177 1 39 SHEET 1 A 5 TYR A 10 GLU A 11 0 SHEET 2 A 5 PRO A 65 VAL A 73 -1 O TYR A 71 N TYR A 10 SHEET 3 A 5 ARG A 50 GLN A 59 -1 N ILE A 57 O ARG A 70 SHEET 4 A 5 VAL A 35 LEU A 40 -1 N LEU A 38 O GLN A 52 SHEET 5 A 5 MSE A 85 GLY A 88 1 O ILE A 86 N ARG A 39 SHEET 1 B 5 GLU B 9 GLU B 11 0 SHEET 2 B 5 PRO B 65 VAL B 73 -1 O TYR B 71 N TYR B 10 SHEET 3 B 5 ARG B 50 GLN B 59 -1 N LEU B 58 O LEU B 66 SHEET 4 B 5 VAL B 35 LEU B 40 -1 N LEU B 38 O GLN B 52 SHEET 5 B 5 MSE B 85 GLY B 88 1 O ILE B 86 N ARG B 39 LINK C GLN A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N VAL A 54 1555 1555 1.33 LINK C THR A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N PHE A 84 1555 1555 1.32 LINK C PHE A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N ILE A 86 1555 1555 1.32 LINK C THR A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ALA A 133 1555 1555 1.33 LINK C GLN A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N THR A 139 1555 1555 1.33 LINK C GLN A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N ILE A 158 1555 1555 1.32 LINK C GLN B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N VAL B 54 1555 1555 1.33 LINK C THR B 82 N MSE B 83 1555 1555 1.32 LINK C MSE B 83 N PHE B 84 1555 1555 1.33 LINK C PHE B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N ILE B 86 1555 1555 1.33 LINK C THR B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N ALA B 133 1555 1555 1.33 LINK C GLN B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N THR B 139 1555 1555 1.33 LINK C GLN B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N ILE B 158 1555 1555 1.32 CRYST1 35.423 94.729 61.659 90.00 93.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028230 0.000000 0.001818 0.00000 SCALE2 0.000000 0.010556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016252 0.00000