data_4JNN # _entry.id 4JNN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JNN pdb_00004jnn 10.2210/pdb4jnn/pdb RCSB RCSB078273 ? ? WWPDB D_1000078273 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetTrack MCSG-APC103670 . unspecified PDB 4ICH . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JNN _pdbx_database_status.recvd_initial_deposition_date 2013-03-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Minasov, G.' 2 'Shuvalova, L.' 3 'Kiryukhina, O.' 4 'Endres, M.' 5 'Joachimiak, A.' 6 'Anderson, W.F.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippova, E.V.' 1 ? primary 'Minasov, G.' 2 ? primary 'Shuvalova, L.' 3 ? primary 'Kiryukhina, O.' 4 ? primary 'Endres, M.' 5 ? primary 'Joachimiak, A.' 6 ? primary 'Anderson, W.F.' 7 ? primary 'Midwest Center for Structural Genomics (MCSG)' 8 ? # _cell.entry_id 4JNN _cell.length_a 42.791 _cell.length_b 109.952 _cell.length_c 76.875 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JNN _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator' 22801.633 1 ? ? 'DNA binding domain and regulatory domain (UNP residues 94-287)' ? 2 non-polymer syn BENZAMIDINE 120.152 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 4 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERL VRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIA(MSE)TIRTGQKQGVFRDQDADELATRLSA LIDGLGIQVLTGKRGCSVDH(MSE)RQHLNDFIEHNIVERRP ; _entity_poly.pdbx_seq_one_letter_code_can ;QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERL VRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDG LGIQVLTGKRGCSVDHMRQHLNDFIEHNIVERRP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC103670 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 GLU n 1 4 ALA n 1 5 ARG n 1 6 ARG n 1 7 ARG n 1 8 ILE n 1 9 LEU n 1 10 GLU n 1 11 THR n 1 12 ALA n 1 13 TRP n 1 14 ARG n 1 15 LEU n 1 16 ILE n 1 17 ALA n 1 18 ARG n 1 19 ARG n 1 20 GLY n 1 21 TYR n 1 22 HIS n 1 23 ASN n 1 24 VAL n 1 25 ARG n 1 26 ILE n 1 27 HIS n 1 28 ASP n 1 29 ILE n 1 30 ALA n 1 31 SER n 1 32 GLU n 1 33 LEU n 1 34 GLY n 1 35 THR n 1 36 SER n 1 37 ASN n 1 38 ALA n 1 39 THR n 1 40 ILE n 1 41 HIS n 1 42 TYR n 1 43 HIS n 1 44 PHE n 1 45 PRO n 1 46 SER n 1 47 LYS n 1 48 LYS n 1 49 ASP n 1 50 ILE n 1 51 LEU n 1 52 LEU n 1 53 GLU n 1 54 ALA n 1 55 LEU n 1 56 ARG n 1 57 ARG n 1 58 ASN n 1 59 VAL n 1 60 LYS n 1 61 LEU n 1 62 ALA n 1 63 PHE n 1 64 ASP n 1 65 ARG n 1 66 GLN n 1 67 VAL n 1 68 ALA n 1 69 GLU n 1 70 LEU n 1 71 HIS n 1 72 THR n 1 73 ILE n 1 74 ALA n 1 75 ASP n 1 76 ALA n 1 77 ARG n 1 78 GLU n 1 79 ARG n 1 80 LEU n 1 81 VAL n 1 82 ARG n 1 83 LEU n 1 84 VAL n 1 85 GLU n 1 86 LEU n 1 87 GLN n 1 88 LEU n 1 89 PRO n 1 90 THR n 1 91 PRO n 1 92 GLY n 1 93 LEU n 1 94 LEU n 1 95 ARG n 1 96 ASP n 1 97 GLU n 1 98 TRP n 1 99 SER n 1 100 VAL n 1 101 TRP n 1 102 LEU n 1 103 GLN n 1 104 VAL n 1 105 TRP n 1 106 THR n 1 107 GLU n 1 108 SER n 1 109 THR n 1 110 LEU n 1 111 ASN n 1 112 PRO n 1 113 LYS n 1 114 ILE n 1 115 ARG n 1 116 ASP n 1 117 LEU n 1 118 TYR n 1 119 ASN n 1 120 ASP n 1 121 ALA n 1 122 TYR n 1 123 ASP n 1 124 ARG n 1 125 TRP n 1 126 TYR n 1 127 GLN n 1 128 THR n 1 129 ILE n 1 130 ALA n 1 131 MSE n 1 132 THR n 1 133 ILE n 1 134 ARG n 1 135 THR n 1 136 GLY n 1 137 GLN n 1 138 LYS n 1 139 GLN n 1 140 GLY n 1 141 VAL n 1 142 PHE n 1 143 ARG n 1 144 ASP n 1 145 GLN n 1 146 ASP n 1 147 ALA n 1 148 ASP n 1 149 GLU n 1 150 LEU n 1 151 ALA n 1 152 THR n 1 153 ARG n 1 154 LEU n 1 155 SER n 1 156 ALA n 1 157 LEU n 1 158 ILE n 1 159 ASP n 1 160 GLY n 1 161 LEU n 1 162 GLY n 1 163 ILE n 1 164 GLN n 1 165 VAL n 1 166 LEU n 1 167 THR n 1 168 GLY n 1 169 LYS n 1 170 ARG n 1 171 GLY n 1 172 CYS n 1 173 SER n 1 174 VAL n 1 175 ASP n 1 176 HIS n 1 177 MSE n 1 178 ARG n 1 179 GLN n 1 180 HIS n 1 181 LEU n 1 182 ASN n 1 183 ASP n 1 184 PHE n 1 185 ILE n 1 186 GLU n 1 187 HIS n 1 188 ASN n 1 189 ILE n 1 190 VAL n 1 191 GLU n 1 192 ARG n 1 193 ARG n 1 194 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Svir_16270 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 43017' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomonospora viridis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 471857 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C7MT25_SACVD _struct_ref.pdbx_db_accession C7MT25 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERL VRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDG LGIQVLTGKRGCSVDHMRQHLNDFIEHNIVERRP ; _struct_ref.pdbx_align_begin 94 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JNN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7MT25 _struct_ref_seq.db_align_beg 94 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 287 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 94 _struct_ref_seq.pdbx_auth_seq_align_end 287 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEN non-polymer . BENZAMIDINE ? 'C7 H8 N2' 120.152 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JNN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.3 _exptl_crystal_grow.pdbx_details '0.2 M tri-Potassium Citrate, 20% PEG3350, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-10-12 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07815 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.07815 # _reflns.entry_id 4JNN _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.35 _reflns.number_obs 7525 _reflns.number_all 7525 _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 53.4 _reflns.B_iso_Wilson_estimate 57 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.14 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 17.7 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JNN _refine.ls_number_reflns_obs 7166 _refine.ls_number_reflns_all 7166 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.85 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 95.79 _refine.ls_R_factor_obs 0.20167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19836 _refine.ls_R_factor_R_free 0.26586 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 344 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 59.308 _refine.aniso_B[1][1] 2.25 _refine.aniso_B[2][2] -3.03 _refine.aniso_B[3][3] 0.78 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 4ICH _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.685 _refine.pdbx_overall_ESU_R_Free 0.304 _refine.overall_SU_ML 0.273 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 24.882 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1568 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1595 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 27.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.019 ? 1610 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.733 1.947 ? 2177 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.434 5.000 ? 190 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.213 22.471 ? 85 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 17.619 15.000 ? 279 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16.557 15.000 ? 21 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.109 0.200 ? 242 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1226 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.354 _refine_ls_shell.d_res_low 2.415 _refine_ls_shell.number_reflns_R_work 522 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 96.65 _refine_ls_shell.R_factor_R_free 0.335 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4JNN _struct.title 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JNN _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TetR family, TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLY A 20 ? SER A 95 GLY A 113 1 ? 19 HELX_P HELX_P2 2 TYR A 21 ? VAL A 24 ? TYR A 114 VAL A 117 5 ? 4 HELX_P HELX_P3 3 ARG A 25 ? GLY A 34 ? ARG A 118 GLY A 127 1 ? 10 HELX_P HELX_P4 4 SER A 36 ? PHE A 44 ? SER A 129 PHE A 137 1 ? 9 HELX_P HELX_P5 5 SER A 46 ? LEU A 70 ? SER A 139 LEU A 163 1 ? 25 HELX_P HELX_P6 6 ASP A 75 ? GLN A 87 ? ASP A 168 GLN A 180 1 ? 13 HELX_P HELX_P7 7 GLY A 92 ? THR A 109 ? GLY A 185 THR A 202 1 ? 18 HELX_P HELX_P8 8 ASN A 111 ? GLN A 139 ? ASN A 204 GLN A 232 1 ? 29 HELX_P HELX_P9 9 ASP A 146 ? GLY A 168 ? ASP A 239 GLY A 261 1 ? 23 HELX_P HELX_P10 10 SER A 173 ? ILE A 189 ? SER A 266 ILE A 282 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 130 C ? ? ? 1_555 A MSE 131 N ? ? A ALA 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 131 C ? ? ? 1_555 A THR 132 N ? ? A MSE 224 A THR 225 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale none ? A CYS 172 SG ? ? ? 1_555 C BME . S2 ? ? A CYS 265 A BME 302 1_555 ? ? ? ? ? ? ? 1.983 ? ? covale4 covale both ? A HIS 176 C ? ? ? 1_555 A MSE 177 N ? ? A HIS 269 A MSE 270 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 177 C ? ? ? 1_555 A ARG 178 N ? ? A MSE 270 A ARG 271 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BEN 301 ? 4 'BINDING SITE FOR RESIDUE BEN A 301' AC2 Software A BME 302 ? 8 'BINDING SITE FOR RESIDUE BME A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 87 ? GLN A 180 . ? 1_555 ? 2 AC1 4 TYR A 118 ? TYR A 211 . ? 1_555 ? 3 AC1 4 TRP A 125 ? TRP A 218 . ? 1_555 ? 4 AC1 4 ASP A 159 ? ASP A 252 . ? 1_555 ? 5 AC2 8 THR A 152 ? THR A 245 . ? 3_557 ? 6 AC2 8 LEU A 161 ? LEU A 254 . ? 1_555 ? 7 AC2 8 GLN A 164 ? GLN A 257 . ? 1_555 ? 8 AC2 8 VAL A 165 ? VAL A 258 . ? 1_555 ? 9 AC2 8 CYS A 172 ? CYS A 265 . ? 1_555 ? 10 AC2 8 SER A 173 ? SER A 266 . ? 1_555 ? 11 AC2 8 HIS A 176 ? HIS A 269 . ? 1_555 ? 12 AC2 8 MSE A 177 ? MSE A 270 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JNN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JNN _atom_sites.fract_transf_matrix[1][1] 0.023369 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009095 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 94 94 GLN GLN A . n A 1 2 SER 2 95 95 SER SER A . n A 1 3 GLU 3 96 96 GLU GLU A . n A 1 4 ALA 4 97 97 ALA ALA A . n A 1 5 ARG 5 98 98 ARG ARG A . n A 1 6 ARG 6 99 99 ARG ARG A . n A 1 7 ARG 7 100 100 ARG ARG A . n A 1 8 ILE 8 101 101 ILE ILE A . n A 1 9 LEU 9 102 102 LEU LEU A . n A 1 10 GLU 10 103 103 GLU GLU A . n A 1 11 THR 11 104 104 THR THR A . n A 1 12 ALA 12 105 105 ALA ALA A . n A 1 13 TRP 13 106 106 TRP TRP A . n A 1 14 ARG 14 107 107 ARG ARG A . n A 1 15 LEU 15 108 108 LEU LEU A . n A 1 16 ILE 16 109 109 ILE ILE A . n A 1 17 ALA 17 110 110 ALA ALA A . n A 1 18 ARG 18 111 111 ARG ARG A . n A 1 19 ARG 19 112 112 ARG ARG A . n A 1 20 GLY 20 113 113 GLY GLY A . n A 1 21 TYR 21 114 114 TYR TYR A . n A 1 22 HIS 22 115 115 HIS HIS A . n A 1 23 ASN 23 116 116 ASN ASN A . n A 1 24 VAL 24 117 117 VAL VAL A . n A 1 25 ARG 25 118 118 ARG ARG A . n A 1 26 ILE 26 119 119 ILE ILE A . n A 1 27 HIS 27 120 120 HIS HIS A . n A 1 28 ASP 28 121 121 ASP ASP A . n A 1 29 ILE 29 122 122 ILE ILE A . n A 1 30 ALA 30 123 123 ALA ALA A . n A 1 31 SER 31 124 124 SER SER A . n A 1 32 GLU 32 125 125 GLU GLU A . n A 1 33 LEU 33 126 126 LEU LEU A . n A 1 34 GLY 34 127 127 GLY GLY A . n A 1 35 THR 35 128 128 THR THR A . n A 1 36 SER 36 129 129 SER SER A . n A 1 37 ASN 37 130 130 ASN ASN A . n A 1 38 ALA 38 131 131 ALA ALA A . n A 1 39 THR 39 132 132 THR THR A . n A 1 40 ILE 40 133 133 ILE ILE A . n A 1 41 HIS 41 134 134 HIS HIS A . n A 1 42 TYR 42 135 135 TYR TYR A . n A 1 43 HIS 43 136 136 HIS HIS A . n A 1 44 PHE 44 137 137 PHE PHE A . n A 1 45 PRO 45 138 138 PRO PRO A . n A 1 46 SER 46 139 139 SER SER A . n A 1 47 LYS 47 140 140 LYS LYS A . n A 1 48 LYS 48 141 141 LYS LYS A . n A 1 49 ASP 49 142 142 ASP ASP A . n A 1 50 ILE 50 143 143 ILE ILE A . n A 1 51 LEU 51 144 144 LEU LEU A . n A 1 52 LEU 52 145 145 LEU LEU A . n A 1 53 GLU 53 146 146 GLU GLU A . n A 1 54 ALA 54 147 147 ALA ALA A . n A 1 55 LEU 55 148 148 LEU LEU A . n A 1 56 ARG 56 149 149 ARG ARG A . n A 1 57 ARG 57 150 150 ARG ARG A . n A 1 58 ASN 58 151 151 ASN ASN A . n A 1 59 VAL 59 152 152 VAL VAL A . n A 1 60 LYS 60 153 153 LYS LYS A . n A 1 61 LEU 61 154 154 LEU LEU A . n A 1 62 ALA 62 155 155 ALA ALA A . n A 1 63 PHE 63 156 156 PHE PHE A . n A 1 64 ASP 64 157 157 ASP ASP A . n A 1 65 ARG 65 158 158 ARG ARG A . n A 1 66 GLN 66 159 159 GLN GLN A . n A 1 67 VAL 67 160 160 VAL VAL A . n A 1 68 ALA 68 161 161 ALA ALA A . n A 1 69 GLU 69 162 162 GLU GLU A . n A 1 70 LEU 70 163 163 LEU LEU A . n A 1 71 HIS 71 164 164 HIS HIS A . n A 1 72 THR 72 165 165 THR THR A . n A 1 73 ILE 73 166 166 ILE ILE A . n A 1 74 ALA 74 167 167 ALA ALA A . n A 1 75 ASP 75 168 168 ASP ASP A . n A 1 76 ALA 76 169 169 ALA ALA A . n A 1 77 ARG 77 170 170 ARG ARG A . n A 1 78 GLU 78 171 171 GLU GLU A . n A 1 79 ARG 79 172 172 ARG ARG A . n A 1 80 LEU 80 173 173 LEU LEU A . n A 1 81 VAL 81 174 174 VAL VAL A . n A 1 82 ARG 82 175 175 ARG ARG A . n A 1 83 LEU 83 176 176 LEU LEU A . n A 1 84 VAL 84 177 177 VAL VAL A . n A 1 85 GLU 85 178 178 GLU GLU A . n A 1 86 LEU 86 179 179 LEU LEU A . n A 1 87 GLN 87 180 180 GLN GLN A . n A 1 88 LEU 88 181 181 LEU LEU A . n A 1 89 PRO 89 182 182 PRO PRO A . n A 1 90 THR 90 183 183 THR THR A . n A 1 91 PRO 91 184 184 PRO PRO A . n A 1 92 GLY 92 185 185 GLY GLY A . n A 1 93 LEU 93 186 186 LEU LEU A . n A 1 94 LEU 94 187 187 LEU LEU A . n A 1 95 ARG 95 188 188 ARG ARG A . n A 1 96 ASP 96 189 189 ASP ASP A . n A 1 97 GLU 97 190 190 GLU GLU A . n A 1 98 TRP 98 191 191 TRP TRP A . n A 1 99 SER 99 192 192 SER SER A . n A 1 100 VAL 100 193 193 VAL VAL A . n A 1 101 TRP 101 194 194 TRP TRP A . n A 1 102 LEU 102 195 195 LEU LEU A . n A 1 103 GLN 103 196 196 GLN GLN A . n A 1 104 VAL 104 197 197 VAL VAL A . n A 1 105 TRP 105 198 198 TRP TRP A . n A 1 106 THR 106 199 199 THR THR A . n A 1 107 GLU 107 200 200 GLU GLU A . n A 1 108 SER 108 201 201 SER SER A . n A 1 109 THR 109 202 202 THR THR A . n A 1 110 LEU 110 203 203 LEU LEU A . n A 1 111 ASN 111 204 204 ASN ASN A . n A 1 112 PRO 112 205 205 PRO PRO A . n A 1 113 LYS 113 206 206 LYS LYS A . n A 1 114 ILE 114 207 207 ILE ILE A . n A 1 115 ARG 115 208 208 ARG ARG A . n A 1 116 ASP 116 209 209 ASP ASP A . n A 1 117 LEU 117 210 210 LEU LEU A . n A 1 118 TYR 118 211 211 TYR TYR A . n A 1 119 ASN 119 212 212 ASN ASN A . n A 1 120 ASP 120 213 213 ASP ASP A . n A 1 121 ALA 121 214 214 ALA ALA A . n A 1 122 TYR 122 215 215 TYR TYR A . n A 1 123 ASP 123 216 216 ASP ASP A . n A 1 124 ARG 124 217 217 ARG ARG A . n A 1 125 TRP 125 218 218 TRP TRP A . n A 1 126 TYR 126 219 219 TYR TYR A . n A 1 127 GLN 127 220 220 GLN GLN A . n A 1 128 THR 128 221 221 THR THR A . n A 1 129 ILE 129 222 222 ILE ILE A . n A 1 130 ALA 130 223 223 ALA ALA A . n A 1 131 MSE 131 224 224 MSE MSE A . n A 1 132 THR 132 225 225 THR THR A . n A 1 133 ILE 133 226 226 ILE ILE A . n A 1 134 ARG 134 227 227 ARG ARG A . n A 1 135 THR 135 228 228 THR THR A . n A 1 136 GLY 136 229 229 GLY GLY A . n A 1 137 GLN 137 230 230 GLN GLN A . n A 1 138 LYS 138 231 231 LYS LYS A . n A 1 139 GLN 139 232 232 GLN GLN A . n A 1 140 GLY 140 233 233 GLY GLY A . n A 1 141 VAL 141 234 234 VAL VAL A . n A 1 142 PHE 142 235 235 PHE PHE A . n A 1 143 ARG 143 236 236 ARG ARG A . n A 1 144 ASP 144 237 237 ASP ASP A . n A 1 145 GLN 145 238 238 GLN GLN A . n A 1 146 ASP 146 239 239 ASP ASP A . n A 1 147 ALA 147 240 240 ALA ALA A . n A 1 148 ASP 148 241 241 ASP ASP A . n A 1 149 GLU 149 242 242 GLU GLU A . n A 1 150 LEU 150 243 243 LEU LEU A . n A 1 151 ALA 151 244 244 ALA ALA A . n A 1 152 THR 152 245 245 THR THR A . n A 1 153 ARG 153 246 246 ARG ARG A . n A 1 154 LEU 154 247 247 LEU LEU A . n A 1 155 SER 155 248 248 SER SER A . n A 1 156 ALA 156 249 249 ALA ALA A . n A 1 157 LEU 157 250 250 LEU LEU A . n A 1 158 ILE 158 251 251 ILE ILE A . n A 1 159 ASP 159 252 252 ASP ASP A . n A 1 160 GLY 160 253 253 GLY GLY A . n A 1 161 LEU 161 254 254 LEU LEU A . n A 1 162 GLY 162 255 255 GLY GLY A . n A 1 163 ILE 163 256 256 ILE ILE A . n A 1 164 GLN 164 257 257 GLN GLN A . n A 1 165 VAL 165 258 258 VAL VAL A . n A 1 166 LEU 166 259 259 LEU LEU A . n A 1 167 THR 167 260 260 THR THR A . n A 1 168 GLY 168 261 261 GLY GLY A . n A 1 169 LYS 169 262 262 LYS LYS A . n A 1 170 ARG 170 263 263 ARG ARG A . n A 1 171 GLY 171 264 264 GLY GLY A . n A 1 172 CYS 172 265 265 CYS CYS A . n A 1 173 SER 173 266 266 SER SER A . n A 1 174 VAL 174 267 267 VAL VAL A . n A 1 175 ASP 175 268 268 ASP ASP A . n A 1 176 HIS 176 269 269 HIS HIS A . n A 1 177 MSE 177 270 270 MSE MSE A . n A 1 178 ARG 178 271 271 ARG ARG A . n A 1 179 GLN 179 272 272 GLN GLN A . n A 1 180 HIS 180 273 273 HIS HIS A . n A 1 181 LEU 181 274 274 LEU LEU A . n A 1 182 ASN 182 275 275 ASN ASN A . n A 1 183 ASP 183 276 276 ASP ASP A . n A 1 184 PHE 184 277 277 PHE PHE A . n A 1 185 ILE 185 278 278 ILE ILE A . n A 1 186 GLU 186 279 279 GLU GLU A . n A 1 187 HIS 187 280 280 HIS HIS A . n A 1 188 ASN 188 281 281 ASN ASN A . n A 1 189 ILE 189 282 282 ILE ILE A . n A 1 190 VAL 190 283 283 VAL VAL A . n A 1 191 GLU 191 284 284 GLU GLU A . n A 1 192 ARG 192 285 ? ? ? A . n A 1 193 ARG 193 286 ? ? ? A . n A 1 194 PRO 194 287 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN 1 301 1 BEN BEN A . C 3 BME 1 302 1 BME BME A . D 4 HOH 1 401 1 HOH HOH A . D 4 HOH 2 402 3 HOH HOH A . D 4 HOH 3 403 4 HOH HOH A . D 4 HOH 4 404 5 HOH HOH A . D 4 HOH 5 405 6 HOH HOH A . D 4 HOH 6 406 7 HOH HOH A . D 4 HOH 7 407 8 HOH HOH A . D 4 HOH 8 408 9 HOH HOH A . D 4 HOH 9 409 10 HOH HOH A . D 4 HOH 10 410 11 HOH HOH A . D 4 HOH 11 411 12 HOH HOH A . D 4 HOH 12 412 13 HOH HOH A . D 4 HOH 13 413 14 HOH HOH A . D 4 HOH 14 414 15 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 131 A MSE 224 ? MET SELENOMETHIONINE 2 A MSE 177 A MSE 270 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4480 ? 1 MORE -2 ? 1 'SSA (A^2)' 17180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 192.1875000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-10 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-09-20 4 'Structure model' 1 3 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_struct_conn.pdbx_dist_value' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 20 4 'Structure model' '_chem_comp_atom.atom_id' 21 4 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.6576 104.0545 86.1248 0.2466 0.2135 0.2888 0.0186 -0.0887 -0.0262 7.0952 10.4893 5.0140 -3.0997 -3.6898 1.0607 0.0583 -0.0402 -0.7666 0.1877 -0.1825 -0.8398 -0.0894 0.3400 0.1243 'X-RAY DIFFRACTION' 2 ? refined 15.5359 128.8790 85.0654 0.2767 0.5057 0.3900 0.1091 0.1263 0.2055 4.4918 7.9334 3.5803 -0.9740 -0.1733 -1.8829 0.5530 0.9908 0.9647 -0.6520 -0.4251 -1.0071 0.2690 0.1504 -0.1279 'X-RAY DIFFRACTION' 3 ? refined 6.6049 131.4827 92.1651 0.2140 0.2201 0.2888 0.0596 0.1503 0.0768 5.3272 1.8735 1.5771 0.4107 0.3673 0.1308 0.4795 0.2345 1.0137 -0.0987 -0.3094 -0.1326 0.1074 0.0669 -0.1701 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 94 ? ? A 143 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 144 ? ? A 180 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 181 ? ? A 284 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.7.0032 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 238 ? CD ? A GLN 145 CD 2 1 Y 1 A GLN 238 ? OE1 ? A GLN 145 OE1 3 1 Y 1 A GLN 238 ? NE2 ? A GLN 145 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 285 ? A ARG 192 2 1 Y 1 A ARG 286 ? A ARG 193 3 1 Y 1 A PRO 287 ? A PRO 194 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BEN C1 C Y N 74 BEN C2 C Y N 75 BEN C3 C Y N 76 BEN C4 C Y N 77 BEN C5 C Y N 78 BEN C6 C Y N 79 BEN C C N N 80 BEN N1 N N N 81 BEN N2 N N N 82 BEN H2 H N N 83 BEN H3 H N N 84 BEN H4 H N N 85 BEN H5 H N N 86 BEN H6 H N N 87 BEN HN1 H N N 88 BEN HN21 H N N 89 BEN HN22 H N N 90 BME C1 C N N 91 BME C2 C N N 92 BME O1 O N N 93 BME S2 S N N 94 BME H11 H N N 95 BME H12 H N N 96 BME H21 H N N 97 BME H22 H N N 98 BME HO1 H N N 99 BME HS2 H N N 100 CYS N N N N 101 CYS CA C N R 102 CYS C C N N 103 CYS O O N N 104 CYS CB C N N 105 CYS SG S N N 106 CYS OXT O N N 107 CYS H H N N 108 CYS H2 H N N 109 CYS HA H N N 110 CYS HB2 H N N 111 CYS HB3 H N N 112 CYS HG H N N 113 CYS HXT H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 MSE N N N N 257 MSE CA C N S 258 MSE C C N N 259 MSE O O N N 260 MSE OXT O N N 261 MSE CB C N N 262 MSE CG C N N 263 MSE SE SE N N 264 MSE CE C N N 265 MSE H H N N 266 MSE H2 H N N 267 MSE HA H N N 268 MSE HXT H N N 269 MSE HB2 H N N 270 MSE HB3 H N N 271 MSE HG2 H N N 272 MSE HG3 H N N 273 MSE HE1 H N N 274 MSE HE2 H N N 275 MSE HE3 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BEN C1 C2 doub Y N 70 BEN C1 C6 sing Y N 71 BEN C1 C sing N N 72 BEN C2 C3 sing Y N 73 BEN C2 H2 sing N N 74 BEN C3 C4 doub Y N 75 BEN C3 H3 sing N N 76 BEN C4 C5 sing Y N 77 BEN C4 H4 sing N N 78 BEN C5 C6 doub Y N 79 BEN C5 H5 sing N N 80 BEN C6 H6 sing N N 81 BEN C N1 doub N E 82 BEN C N2 sing N N 83 BEN N1 HN1 sing N N 84 BEN N2 HN21 sing N N 85 BEN N2 HN22 sing N N 86 BME C1 C2 sing N N 87 BME C1 O1 sing N N 88 BME C1 H11 sing N N 89 BME C1 H12 sing N N 90 BME C2 S2 sing N N 91 BME C2 H21 sing N N 92 BME C2 H22 sing N N 93 BME O1 HO1 sing N N 94 BME S2 HS2 sing N N 95 CYS N CA sing N N 96 CYS N H sing N N 97 CYS N H2 sing N N 98 CYS CA C sing N N 99 CYS CA CB sing N N 100 CYS CA HA sing N N 101 CYS C O doub N N 102 CYS C OXT sing N N 103 CYS CB SG sing N N 104 CYS CB HB2 sing N N 105 CYS CB HB3 sing N N 106 CYS SG HG sing N N 107 CYS OXT HXT sing N N 108 GLN N CA sing N N 109 GLN N H sing N N 110 GLN N H2 sing N N 111 GLN CA C sing N N 112 GLN CA CB sing N N 113 GLN CA HA sing N N 114 GLN C O doub N N 115 GLN C OXT sing N N 116 GLN CB CG sing N N 117 GLN CB HB2 sing N N 118 GLN CB HB3 sing N N 119 GLN CG CD sing N N 120 GLN CG HG2 sing N N 121 GLN CG HG3 sing N N 122 GLN CD OE1 doub N N 123 GLN CD NE2 sing N N 124 GLN NE2 HE21 sing N N 125 GLN NE2 HE22 sing N N 126 GLN OXT HXT sing N N 127 GLU N CA sing N N 128 GLU N H sing N N 129 GLU N H2 sing N N 130 GLU CA C sing N N 131 GLU CA CB sing N N 132 GLU CA HA sing N N 133 GLU C O doub N N 134 GLU C OXT sing N N 135 GLU CB CG sing N N 136 GLU CB HB2 sing N N 137 GLU CB HB3 sing N N 138 GLU CG CD sing N N 139 GLU CG HG2 sing N N 140 GLU CG HG3 sing N N 141 GLU CD OE1 doub N N 142 GLU CD OE2 sing N N 143 GLU OE2 HE2 sing N N 144 GLU OXT HXT sing N N 145 GLY N CA sing N N 146 GLY N H sing N N 147 GLY N H2 sing N N 148 GLY CA C sing N N 149 GLY CA HA2 sing N N 150 GLY CA HA3 sing N N 151 GLY C O doub N N 152 GLY C OXT sing N N 153 GLY OXT HXT sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MSE N CA sing N N 244 MSE N H sing N N 245 MSE N H2 sing N N 246 MSE CA C sing N N 247 MSE CA CB sing N N 248 MSE CA HA sing N N 249 MSE C O doub N N 250 MSE C OXT sing N N 251 MSE OXT HXT sing N N 252 MSE CB CG sing N N 253 MSE CB HB2 sing N N 254 MSE CB HB3 sing N N 255 MSE CG SE sing N N 256 MSE CG HG2 sing N N 257 MSE CG HG3 sing N N 258 MSE SE CE sing N N 259 MSE CE HE1 sing N N 260 MSE CE HE2 sing N N 261 MSE CE HE3 sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TRP N CA sing N N 332 TRP N H sing N N 333 TRP N H2 sing N N 334 TRP CA C sing N N 335 TRP CA CB sing N N 336 TRP CA HA sing N N 337 TRP C O doub N N 338 TRP C OXT sing N N 339 TRP CB CG sing N N 340 TRP CB HB2 sing N N 341 TRP CB HB3 sing N N 342 TRP CG CD1 doub Y N 343 TRP CG CD2 sing Y N 344 TRP CD1 NE1 sing Y N 345 TRP CD1 HD1 sing N N 346 TRP CD2 CE2 doub Y N 347 TRP CD2 CE3 sing Y N 348 TRP NE1 CE2 sing Y N 349 TRP NE1 HE1 sing N N 350 TRP CE2 CZ2 sing Y N 351 TRP CE3 CZ3 doub Y N 352 TRP CE3 HE3 sing N N 353 TRP CZ2 CH2 doub Y N 354 TRP CZ2 HZ2 sing N N 355 TRP CZ3 CH2 sing Y N 356 TRP CZ3 HZ3 sing N N 357 TRP CH2 HH2 sing N N 358 TRP OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BENZAMIDINE BEN 3 BETA-MERCAPTOETHANOL BME 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ICH _pdbx_initial_refinement_model.details ? #