HEADER OXIDOREDUCTASE 15-MAR-13 4JNQ TITLE CRYSTAL STRUCTURE OF A THIOREDOXIN REDUCTASE FROM BRUCELLA MELITENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BV. 1; SOURCE 3 ORGANISM_TAXID: 224914; SOURCE 4 STRAIN: 16M / ATCC 23456 / NCTC 10094; SOURCE 5 GENE: BAWG_2493, BMEI0512; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, FLAVIN, FAD, EBSELEN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-NOV-24 4JNQ 1 REMARK REVDAT 2 20-SEP-23 4JNQ 1 REMARK SEQADV LINK REVDAT 1 03-APR-13 4JNQ 0 JRNL AUTH T.E.EDWARDS,T.L.ARAKAKI, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A THIOREDOXIN REDUCTASE FROM BRUCELLA JRNL TITL 2 MELITENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2420 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2264 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3313 ; 1.483 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5178 ; 0.768 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;35.373 ;24.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;11.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2776 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 1.445 ; 1.931 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1263 ; 1.414 ; 1.928 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1578 ; 2.149 ; 2.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 317 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4054 11.0268 94.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0329 REMARK 3 T33: 0.0439 T12: -0.0037 REMARK 3 T13: 0.0003 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.0539 L22: 0.0277 REMARK 3 L33: 0.4453 L12: 0.0052 REMARK 3 L13: 0.0095 L23: 0.0456 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0057 S13: 0.0426 REMARK 3 S21: -0.0073 S22: 0.0259 S23: 0.0124 REMARK 3 S31: -0.0101 S32: 0.0137 S33: -0.0314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4JNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 1CL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BRMEA.00058.A.A1 PS01310 AT 21.1 MG/ML REMARK 280 WITH 2 MM EBSELEN AGAINST MORPHEUS SCREEN CONDITION G1: 10% REMARK 280 PEG20000, 20% PEG550 MME, 0.02 M SODIUM FORMATE, 0.02 M AMMONIUM REMARK 280 ACETATE, 0.02 M TRISODIUM CITRATE, 0.02 M SODIUM POTASSIUM L- REMARK 280 TARTRATE, 0.02 M SODIUM OXAMATE, 0.1 M MES/IMIDAZOLE, PH 6.5, REMARK 280 CRYSTAL TRACKING ID 241371G1, UNIQUE PUCK ID QOJ501, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.04000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 208.16000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 215 REMARK 465 PRO A 216 REMARK 465 MET A 217 REMARK 465 PRO A 318 REMARK 465 LEU A 319 REMARK 465 HIS A 320 REMARK 465 GLU A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 GLU A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 182 62.84 -113.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 269 OG1 REMARK 620 2 ALA A 270 O 112.9 REMARK 620 3 SER A 273 O 94.1 81.4 REMARK 620 4 HOH A 699 O 82.7 99.7 176.8 REMARK 620 5 HOH A 731 O 136.1 110.2 84.6 97.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BRMEA.00058.A RELATED DB: TARGETTRACK DBREF 4JNQ A 1 324 UNP Q8YID2 Q8YID2_BRUME 1 324 SEQADV 4JNQ MET A -20 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ ALA A -19 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -18 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -17 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -16 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -15 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -14 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ HIS A -13 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ MET A -12 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLY A -11 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ THR A -10 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ LEU A -9 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLU A -8 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ ALA A -7 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLN A -6 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ THR A -5 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLN A -4 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLY A -3 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ PRO A -2 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ GLY A -1 UNP Q8YID2 EXPRESSION TAG SEQADV 4JNQ SER A 0 UNP Q8YID2 EXPRESSION TAG SEQRES 1 A 345 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 345 ALA GLN THR GLN GLY PRO GLY SER MET THR GLN ARG HIS SEQRES 3 A 345 ALA PRO VAL ILE VAL ILE GLY SER GLY PRO ALA GLY TYR SEQRES 4 A 345 THR ALA ALA ILE TYR ALA ALA ARG ALA MET LEU LYS PRO SEQRES 5 A 345 VAL VAL ILE ALA GLY LEU GLN GLN GLY GLY GLN LEU MET SEQRES 6 A 345 ILE THR THR ASP VAL GLU ASN TYR PRO GLY TYR ALA GLU SEQRES 7 A 345 PRO VAL GLN GLY PRO TRP MET MET GLU GLN MET ALA ARG SEQRES 8 A 345 GLN ALA GLU ASN VAL GLY ALA GLN ILE VAL HIS ASP ILE SEQRES 9 A 345 ILE THR GLU VAL GLU THR THR VAL ARG PRO PHE ARG LEU SEQRES 10 A 345 LYS GLY ASP SER GLY THR ILE TYR THR CYS ASP ALA LEU SEQRES 11 A 345 ILE ILE ALA THR GLY ALA GLN ALA LYS TRP LEU GLY LEU SEQRES 12 A 345 GLU SER GLU GLN THR PHE MET GLY GLY GLY VAL SER ALA SEQRES 13 A 345 CYS ALA THR CYS ASP GLY PHE PHE TYR ARG GLY LYS ASP SEQRES 14 A 345 VAL VAL VAL VAL GLY GLY GLY ASN THR ALA VAL GLU GLU SEQRES 15 A 345 ALA LEU TYR LEU SER HIS ILE ALA LYS SER VAL THR ILE SEQRES 16 A 345 VAL HIS ARG ARG ASP GLY PHE ARG ALA GLU LYS ILE MET SEQRES 17 A 345 GLN ASP ARG LEU LEU SER ARG GLU ASN VAL SER VAL VAL SEQRES 18 A 345 TRP ASN SER VAL ILE ASP GLU ILE LEU GLY THR GLU ALA SEQRES 19 A 345 ARG PRO PRO MET GLY ALA THR VAL THR GLY VAL ARG LEU SEQRES 20 A 345 LYS ASN ILE VAL THR GLY GLU THR GLN GLU ARG ALA THR SEQRES 21 A 345 HIS GLY VAL PHE ILE ALA ILE GLY HIS ALA PRO ALA VAL SEQRES 22 A 345 SER LEU PHE GLU GLY LYS LEU LYS GLN LYS PRO ASN GLY SEQRES 23 A 345 TYR LEU TRP THR ALA PRO ASP SER THR ALA THR ASP VAL SEQRES 24 A 345 PRO GLY ILE PHE ALA ALA GLY ASP VAL THR ASP ASP ILE SEQRES 25 A 345 TYR ARG GLN ALA VAL THR ALA ALA GLY MET GLY CYS MET SEQRES 26 A 345 ALA ALA LEU GLU ALA GLU ARG TRP LEU ALA ALA GLN GLU SEQRES 27 A 345 PRO LEU HIS GLU ALA ALA GLU HET FDA A 401 53 HET NA A 402 1 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 NA NA 1+ FORMUL 4 HOH *233(H2 O) HELIX 1 1 GLY A 14 ALA A 27 1 14 HELIX 2 2 GLY A 41 THR A 46 5 6 HELIX 3 3 GLN A 60 VAL A 75 1 16 HELIX 4 4 LEU A 122 PHE A 128 1 7 HELIX 5 5 CYS A 136 GLY A 141 1 6 HELIX 6 6 PHE A 142 ARG A 145 5 4 HELIX 7 7 GLY A 155 HIS A 167 1 13 HELIX 8 8 GLU A 184 SER A 193 1 10 HELIX 9 9 GLN A 294 GLU A 317 1 24 SHEET 1 A 6 GLN A 78 VAL A 80 0 SHEET 2 A 6 VAL A 32 ILE A 34 1 N VAL A 33 O VAL A 80 SHEET 3 A 6 GLN A 3 ILE A 11 1 N VAL A 10 O ILE A 34 SHEET 4 A 6 ILE A 103 ILE A 111 1 O ILE A 110 N ILE A 11 SHEET 5 A 6 PHE A 94 GLY A 98 -1 N LEU A 96 O TYR A 104 SHEET 6 A 6 ILE A 84 GLU A 88 -1 N GLU A 88 O ARG A 95 SHEET 1 B 5 GLN A 78 VAL A 80 0 SHEET 2 B 5 VAL A 32 ILE A 34 1 N VAL A 33 O VAL A 80 SHEET 3 B 5 GLN A 3 ILE A 11 1 N VAL A 10 O ILE A 34 SHEET 4 B 5 ILE A 103 ILE A 111 1 O ILE A 110 N ILE A 11 SHEET 5 B 5 ILE A 281 ALA A 283 1 O PHE A 282 N ILE A 111 SHEET 1 C 2 ALA A 115 ALA A 117 0 SHEET 2 C 2 HIS A 248 PRO A 250 -1 O ALA A 249 N GLN A 116 SHEET 1 D 5 VAL A 133 SER A 134 0 SHEET 2 D 5 GLY A 241 ILE A 244 1 O ILE A 244 N SER A 134 SHEET 3 D 5 ASP A 148 VAL A 152 1 N VAL A 150 O PHE A 243 SHEET 4 D 5 SER A 171 VAL A 175 1 O VAL A 175 N VAL A 151 SHEET 5 D 5 VAL A 197 VAL A 200 1 O VAL A 200 N ILE A 174 SHEET 1 E 3 SER A 203 GLY A 210 0 SHEET 2 E 3 VAL A 221 ASN A 228 -1 O ARG A 225 N ASP A 206 SHEET 3 E 3 THR A 234 ALA A 238 -1 O GLN A 235 N LEU A 226 SSBOND 1 CYS A 136 CYS A 139 1555 1555 2.10 LINK OG1 THR A 269 NA NA A 402 1555 1555 2.35 LINK O ALA A 270 NA NA A 402 1555 1555 2.39 LINK O SER A 273 NA NA A 402 1555 1555 2.38 LINK NA NA A 402 O HOH A 699 1555 1555 2.25 LINK NA NA A 402 O HOH A 731 1555 1555 2.46 CISPEP 1 ARG A 92 PRO A 93 0 -4.60 SITE 1 AC1 37 ILE A 11 GLY A 12 SER A 13 GLY A 14 SITE 2 AC1 37 PRO A 15 ALA A 16 TYR A 23 ILE A 34 SITE 3 AC1 37 ALA A 35 GLY A 36 LEU A 37 GLN A 38 SITE 4 AC1 37 GLY A 41 GLN A 42 LEU A 43 ASN A 51 SITE 5 AC1 37 ILE A 84 ALA A 112 THR A 113 GLY A 114 SITE 6 AC1 37 CYS A 139 LEU A 254 GLY A 285 ASP A 286 SITE 7 AC1 37 ARG A 293 GLN A 294 ALA A 295 ALA A 298 SITE 8 AC1 37 HOH A 501 HOH A 505 HOH A 509 HOH A 526 SITE 9 AC1 37 HOH A 568 HOH A 616 HOH A 631 HOH A 665 SITE 10 AC1 37 HOH A 682 SITE 1 AC2 5 THR A 269 ALA A 270 SER A 273 HOH A 699 SITE 2 AC2 5 HOH A 731 CRYST1 44.790 77.190 104.080 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009608 0.00000