HEADER OXIDOREDUCTASE 16-MAR-13 4JNZ TITLE CRYSTAL STRUCTURE OF PUTA86-630 MUTANT D370N COMPLEXED WITH L- TITLE 2 TETRAHYDRO-2-FUROIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN PUTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-630; COMPND 5 SYNONYM: PROLINE DEHYDROGENASE, PROLINE OXIDASE, DELTA-1-PYRROLINE-5- COMPND 6 CARBOXYLATE DEHYDROGENASE, P5C DEHYDROGENASE; COMPND 7 EC: 1.5.99.8, 1.5.1.12; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PUTA, POAA, B1014, JW0999; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA/ALPHA BARREL, FLAVOENZYME, PROLINE CATABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER REVDAT 3 20-SEP-23 4JNZ 1 REMARK SEQADV REVDAT 2 15-NOV-17 4JNZ 1 REMARK REVDAT 1 28-AUG-13 4JNZ 0 JRNL AUTH W.ZHU,A.M.HAILE,R.K.SINGH,J.D.LARSON,D.SMITHEN,J.Y.CHAN, JRNL AUTH 2 J.J.TANNER,D.F.BECKER JRNL TITL INVOLVEMENT OF THE BETA 3-ALPHA 3 LOOP OF THE PROLINE JRNL TITL 2 DEHYDROGENASE DOMAIN IN ALLOSTERIC REGULATION OF MEMBRANE JRNL TITL 3 ASSOCIATION OF PROLINE UTILIZATION A. JRNL REF BIOCHEMISTRY V. 52 4482 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23713611 JRNL DOI 10.1021/BI400396G REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 64135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6497 - 5.2605 0.97 2788 131 0.2010 0.2291 REMARK 3 2 5.2605 - 4.1768 1.00 2719 144 0.1564 0.1766 REMARK 3 3 4.1768 - 3.6492 1.00 2697 139 0.1732 0.1978 REMARK 3 4 3.6492 - 3.3157 1.00 2692 135 0.1995 0.2768 REMARK 3 5 3.3157 - 3.0781 1.00 2668 143 0.2089 0.2426 REMARK 3 6 3.0781 - 2.8967 1.00 2677 142 0.2149 0.2594 REMARK 3 7 2.8967 - 2.7517 1.00 2646 146 0.2021 0.2126 REMARK 3 8 2.7517 - 2.6319 1.00 2649 124 0.2022 0.2095 REMARK 3 9 2.6319 - 2.5306 1.00 2677 131 0.1986 0.2407 REMARK 3 10 2.5306 - 2.4433 1.00 2635 151 0.1956 0.2352 REMARK 3 11 2.4433 - 2.3669 1.00 2635 149 0.1914 0.2352 REMARK 3 12 2.3669 - 2.2993 1.00 2623 147 0.1896 0.1793 REMARK 3 13 2.2993 - 2.2387 1.00 2678 131 0.1996 0.2439 REMARK 3 14 2.2387 - 2.1841 1.00 2665 120 0.1905 0.2199 REMARK 3 15 2.1841 - 2.1345 1.00 2610 143 0.1893 0.2562 REMARK 3 16 2.1345 - 2.0890 1.00 2638 142 0.1975 0.2261 REMARK 3 17 2.0890 - 2.0473 1.00 2625 150 0.1935 0.2140 REMARK 3 18 2.0473 - 2.0086 1.00 2629 152 0.1934 0.2085 REMARK 3 19 2.0086 - 1.9727 1.00 2619 149 0.1992 0.2393 REMARK 3 20 1.9727 - 1.9393 1.00 2636 143 0.2021 0.2310 REMARK 3 21 1.9393 - 1.9080 1.00 2571 159 0.1976 0.2797 REMARK 3 22 1.9080 - 1.8787 1.00 2647 149 0.2114 0.2433 REMARK 3 23 1.8787 - 1.8510 0.93 2478 113 0.2299 0.2962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3890 REMARK 3 ANGLE : 1.079 5290 REMARK 3 CHIRALITY : 0.069 602 REMARK 3 PLANARITY : 0.004 678 REMARK 3 DIHEDRAL : 16.504 1459 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3E2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11 - 26 % (W/V) PEG 3350 AND 0.1 M REMARK 280 SODIUM CITRATE BUFFER, PH 5.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.39850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.27450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.47550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.39850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.27450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.47550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.39850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.27450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.47550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.39850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.27450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.47550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.54900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 86 REMARK 465 LYS A 188 REMARK 465 ILE A 189 REMARK 465 SER A 190 REMARK 465 ASN A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 TRP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 LEU A 611 REMARK 465 TYR A 612 REMARK 465 GLY A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 ARG A 616 REMARK 465 ASP A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 ASP A 623 REMARK 465 LEU A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 ALA A 631 REMARK 465 SER A 632 REMARK 465 LEU A 633 REMARK 465 SER A 634 REMARK 465 SER A 635 REMARK 465 ALA A 636 REMARK 465 LEU A 637 REMARK 465 LEU A 638 REMARK 465 ASN A 639 REMARK 465 SER A 640 REMARK 465 ALA A 641 REMARK 465 LEU A 642 REMARK 465 GLN A 643 REMARK 465 LYS A 644 REMARK 465 TRP A 645 REMARK 465 GLN A 646 REMARK 465 ALA A 647 REMARK 465 LEU A 648 REMARK 465 PRO A 649 REMARK 465 MET A 650 REMARK 465 LEU A 651 REMARK 465 GLU A 652 REMARK 465 GLN A 653 REMARK 465 PRO A 654 REMARK 465 VAL A 655 REMARK 465 ALA A 656 REMARK 465 ALA A 657 REMARK 465 GLY A 658 REMARK 465 GLU A 659 REMARK 465 MET A 660 REMARK 465 SER A 661 REMARK 465 PRO A 662 REMARK 465 VAL A 663 REMARK 465 ILE A 664 REMARK 465 ASN A 665 REMARK 465 PRO A 666 REMARK 465 ALA A 667 REMARK 465 GLU A 668 REMARK 465 PRO A 669 REMARK 465 SER A 670 REMARK 465 SER A 671 REMARK 465 SER A 672 REMARK 465 VAL A 673 REMARK 465 ASP A 674 REMARK 465 LYS A 675 REMARK 465 LEU A 676 REMARK 465 ALA A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 679 REMARK 465 LEU A 680 REMARK 465 GLU A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 HIS A 685 REMARK 465 HIS A 686 REMARK 465 HIS A 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 LYS A 139 CE NZ REMARK 470 MET A 147 CG SD CE REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LEU A 151 CG CD1 CD2 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 PHE A 155 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 156 OG REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 SER A 159 OG REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 213 CG CD1 CD2 REMARK 470 SER A 227 OG REMARK 470 LEU A 228 CG CD1 CD2 REMARK 470 SER A 229 OG REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 SER A 231 OG REMARK 470 LEU A 232 CG CD1 CD2 REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 470 GLN A 362 CD OE1 NE2 REMARK 470 ARG A 425 CZ NH1 NH2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 LYS A 527 NZ REMARK 470 GLU A 547 OE1 OE2 REMARK 470 LYS A 590 CE NZ REMARK 470 LYS A 604 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 154 -80.43 -47.97 REMARK 500 PHE A 155 29.85 -67.40 REMARK 500 SER A 156 51.54 35.89 REMARK 500 SER A 159 -78.01 -59.79 REMARK 500 ARG A 234 -70.67 -58.38 REMARK 500 GLU A 372 -136.56 -120.86 REMARK 500 ASN A 502 49.70 71.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 2004 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFB A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 2004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JNY RELATED DB: PDB DBREF 4JNZ A 86 669 UNP P09546 PUTA_ECOLI 86 669 SEQADV 4JNZ ASN A 370 UNP P09546 ASP 370 ENGINEERED MUTATION SEQADV 4JNZ SER A 670 UNP P09546 EXPRESSION TAG SEQADV 4JNZ SER A 671 UNP P09546 EXPRESSION TAG SEQADV 4JNZ SER A 672 UNP P09546 EXPRESSION TAG SEQADV 4JNZ VAL A 673 UNP P09546 EXPRESSION TAG SEQADV 4JNZ ASP A 674 UNP P09546 EXPRESSION TAG SEQADV 4JNZ LYS A 675 UNP P09546 EXPRESSION TAG SEQADV 4JNZ LEU A 676 UNP P09546 EXPRESSION TAG SEQADV 4JNZ ALA A 677 UNP P09546 EXPRESSION TAG SEQADV 4JNZ ALA A 678 UNP P09546 EXPRESSION TAG SEQADV 4JNZ ALA A 679 UNP P09546 EXPRESSION TAG SEQADV 4JNZ LEU A 680 UNP P09546 EXPRESSION TAG SEQADV 4JNZ GLU A 681 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 682 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 683 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 684 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 685 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 686 UNP P09546 EXPRESSION TAG SEQADV 4JNZ HIS A 687 UNP P09546 EXPRESSION TAG SEQRES 1 A 602 LEU PRO GLN SER VAL SER ARG ALA ALA ILE THR ALA ALA SEQRES 2 A 602 TYR ARG ARG PRO GLU THR GLU ALA VAL SER MET LEU LEU SEQRES 3 A 602 GLU GLN ALA ARG LEU PRO GLN PRO VAL ALA GLU GLN ALA SEQRES 4 A 602 HIS LYS LEU ALA TYR GLN LEU ALA ASP LYS LEU ARG ASN SEQRES 5 A 602 GLN LYS ASN ALA SER GLY ARG ALA GLY MET VAL GLN GLY SEQRES 6 A 602 LEU LEU GLN GLU PHE SER LEU SER SER GLN GLU GLY VAL SEQRES 7 A 602 ALA LEU MET CYS LEU ALA GLU ALA LEU LEU ARG ILE PRO SEQRES 8 A 602 ASP LYS ALA THR ARG ASP ALA LEU ILE ARG ASP LYS ILE SEQRES 9 A 602 SER ASN GLY ASN TRP GLN SER HIS ILE GLY ARG SER PRO SEQRES 10 A 602 SER LEU PHE VAL ASN ALA ALA THR TRP GLY LEU LEU PHE SEQRES 11 A 602 THR GLY LYS LEU VAL SER THR HIS ASN GLU ALA SER LEU SEQRES 12 A 602 SER ARG SER LEU ASN ARG ILE ILE GLY LYS SER GLY GLU SEQRES 13 A 602 PRO LEU ILE ARG LYS GLY VAL ASP MET ALA MET ARG LEU SEQRES 14 A 602 MET GLY GLU GLN PHE VAL THR GLY GLU THR ILE ALA GLU SEQRES 15 A 602 ALA LEU ALA ASN ALA ARG LYS LEU GLU GLU LYS GLY PHE SEQRES 16 A 602 ARG TYR SER TYR ASP MET LEU GLY GLU ALA ALA LEU THR SEQRES 17 A 602 ALA ALA ASP ALA GLN ALA TYR MET VAL SER TYR GLN GLN SEQRES 18 A 602 ALA ILE HIS ALA ILE GLY LYS ALA SER ASN GLY ARG GLY SEQRES 19 A 602 ILE TYR GLU GLY PRO GLY ILE SER ILE LYS LEU SER ALA SEQRES 20 A 602 LEU HIS PRO ARG TYR SER ARG ALA GLN TYR ASP ARG VAL SEQRES 21 A 602 MET GLU GLU LEU TYR PRO ARG LEU LYS SER LEU THR LEU SEQRES 22 A 602 LEU ALA ARG GLN TYR ASP ILE GLY ILE ASN ILE ASN ALA SEQRES 23 A 602 GLU GLU SER ASP ARG LEU GLU ILE SER LEU ASP LEU LEU SEQRES 24 A 602 GLU LYS LEU CYS PHE GLU PRO GLU LEU ALA GLY TRP ASN SEQRES 25 A 602 GLY ILE GLY PHE VAL ILE GLN ALA TYR GLN LYS ARG CYS SEQRES 26 A 602 PRO LEU VAL ILE ASP TYR LEU ILE ASP LEU ALA THR ARG SEQRES 27 A 602 SER ARG ARG ARG LEU MET ILE ARG LEU VAL LYS GLY ALA SEQRES 28 A 602 TYR TRP ASP SER GLU ILE LYS ARG ALA GLN MET ASP GLY SEQRES 29 A 602 LEU GLU GLY TYR PRO VAL TYR THR ARG LYS VAL TYR THR SEQRES 30 A 602 ASP VAL SER TYR LEU ALA CYS ALA LYS LYS LEU LEU ALA SEQRES 31 A 602 VAL PRO ASN LEU ILE TYR PRO GLN PHE ALA THR HIS ASN SEQRES 32 A 602 ALA HIS THR LEU ALA ALA ILE TYR GLN LEU ALA GLY GLN SEQRES 33 A 602 ASN TYR TYR PRO GLY GLN TYR GLU PHE GLN CYS LEU HIS SEQRES 34 A 602 GLY MET GLY GLU PRO LEU TYR GLU GLN VAL THR GLY LYS SEQRES 35 A 602 VAL ALA ASP GLY LYS LEU ASN ARG PRO CYS ARG ILE TYR SEQRES 36 A 602 ALA PRO VAL GLY THR HIS GLU THR LEU LEU ALA TYR LEU SEQRES 37 A 602 VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN THR SER PHE SEQRES 38 A 602 VAL ASN ARG ILE ALA ASP THR SER LEU PRO LEU ASP GLU SEQRES 39 A 602 LEU VAL ALA ASP PRO VAL THR ALA VAL GLU LYS LEU ALA SEQRES 40 A 602 GLN GLN GLU GLY GLN THR GLY LEU PRO HIS PRO LYS ILE SEQRES 41 A 602 PRO LEU PRO ARG ASP LEU TYR GLY HIS GLY ARG ASP ASN SEQRES 42 A 602 SER ALA GLY LEU ASP LEU ALA ASN GLU HIS ARG LEU ALA SEQRES 43 A 602 SER LEU SER SER ALA LEU LEU ASN SER ALA LEU GLN LYS SEQRES 44 A 602 TRP GLN ALA LEU PRO MET LEU GLU GLN PRO VAL ALA ALA SEQRES 45 A 602 GLY GLU MET SER PRO VAL ILE ASN PRO ALA GLU PRO SER SEQRES 46 A 602 SER SER VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 47 A 602 HIS HIS HIS HIS HET FAD A2001 53 HET TFB A2002 8 HET 1PE A2003 16 HET 1PE A2004 10 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TFB TETRAHYDROFURAN-2-CARBOXYLIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 TFB C5 H8 O3 FORMUL 4 1PE 2(C10 H22 O6) FORMUL 6 HOH *258(H2 O) HELIX 1 1 SER A 89 ALA A 98 1 10 HELIX 2 2 PRO A 102 ARG A 115 1 14 HELIX 3 3 PRO A 117 ASN A 137 1 21 HELIX 4 4 ASN A 140 PHE A 155 1 16 HELIX 5 5 SER A 158 ARG A 174 1 17 HELIX 6 6 ASP A 177 ASP A 187 1 11 HELIX 7 7 ASN A 207 LEU A 213 1 7 HELIX 8 8 SER A 227 ILE A 236 1 10 HELIX 9 9 LEU A 243 GLU A 257 1 15 HELIX 10 10 GLN A 258 VAL A 260 5 3 HELIX 11 11 THR A 264 ALA A 270 1 7 HELIX 12 12 ALA A 272 GLU A 277 1 6 HELIX 13 13 THR A 293 ASN A 316 1 24 HELIX 14 14 ARG A 318 GLY A 323 1 6 HELIX 15 15 LYS A 329 LEU A 333 5 5 HELIX 16 16 ARG A 336 ALA A 340 5 5 HELIX 17 17 GLN A 341 ASP A 364 1 24 HELIX 18 18 GLU A 373 ASP A 375 5 3 HELIX 19 19 ARG A 376 PHE A 389 1 14 HELIX 20 20 GLU A 390 ALA A 394 5 5 HELIX 21 21 ARG A 409 ARG A 425 1 17 HELIX 22 22 TYR A 437 GLY A 449 1 13 HELIX 23 23 ARG A 458 ALA A 475 1 18 HELIX 24 24 ASN A 488 ALA A 499 1 12 HELIX 25 25 TYR A 504 TYR A 508 5 5 HELIX 26 26 GLY A 517 GLU A 522 1 6 HELIX 27 27 LYS A 527 GLY A 531 5 5 HELIX 28 28 THR A 545 THR A 548 5 4 HELIX 29 29 LEU A 549 ALA A 562 1 14 HELIX 30 30 SER A 565 ILE A 570 1 6 HELIX 31 31 PRO A 576 VAL A 581 1 6 HELIX 32 32 ASP A 583 GLY A 596 1 14 SHEET 1 A 9 ARG A 281 MET A 286 0 SHEET 2 A 9 GLY A 325 ILE A 328 1 O SER A 327 N TYR A 284 SHEET 3 A 9 ILE A 367 ILE A 369 1 O ASN A 368 N ILE A 328 SHEET 4 A 9 ILE A 399 GLN A 404 1 O GLY A 400 N ILE A 367 SHEET 5 A 9 LEU A 428 VAL A 433 1 O ARG A 431 N ILE A 403 SHEET 6 A 9 ILE A 480 ALA A 485 1 O TYR A 481 N LEU A 428 SHEET 7 A 9 GLU A 509 LEU A 513 1 O GLU A 509 N PHE A 484 SHEET 8 A 9 CYS A 537 VAL A 543 1 O TYR A 540 N CYS A 512 SHEET 9 A 9 ARG A 281 MET A 286 1 N SER A 283 O ALA A 541 SITE 1 AC1 35 ASN A 370 ALA A 371 VAL A 402 GLN A 404 SITE 2 AC1 35 TYR A 406 ARG A 431 VAL A 433 LYS A 434 SITE 3 AC1 35 GLY A 435 ALA A 436 TYR A 437 TRP A 438 SITE 4 AC1 35 TYR A 456 THR A 457 ARG A 458 LYS A 459 SITE 5 AC1 35 THR A 462 ALA A 485 THR A 486 HIS A 487 SITE 6 AC1 35 ASN A 488 GLN A 511 CYS A 512 LEU A 513 SITE 7 AC1 35 TYR A 540 ARG A 556 GLU A 559 SER A 565 SITE 8 AC1 35 PHE A 566 TFB A2002 HOH A2101 HOH A2105 SITE 9 AC1 35 HOH A2106 HOH A2109 HOH A2175 SITE 1 AC2 9 ASN A 370 ALA A 436 TYR A 540 TYR A 552 SITE 2 AC2 9 ARG A 555 ARG A 556 FAD A2001 HOH A2356 SITE 3 AC2 9 HOH A2357 SITE 1 AC3 7 ARG A 144 ARG A 174 TRP A 211 LEU A 254 SITE 2 AC3 7 MET A 255 LEU A 557 ASN A 560 SITE 1 AC4 6 ALA A 421 ARG A 426 LEU A 474 LEU A 479 SITE 2 AC4 6 LEU A 498 HOH A2283 CRYST1 72.797 140.549 146.951 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006805 0.00000