HEADER IMMUNE SYSTEM 16-MAR-13 4JO4 TITLE CRYSTAL STRUCTURE OF RABBIT MAB R20 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY R20 LIGHT CHAIN; COMPND 3 CHAIN: L, M; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY R20 HEAVY CHAIN; COMPND 8 CHAIN: H, I; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 10 ORGANISM_COMMON: RABBIT; SOURCE 11 ORGANISM_TAXID: 9986; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IG, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.M.PAN,X.P.KONG REVDAT 4 30-OCT-24 4JO4 1 REMARK REVDAT 3 15-NOV-17 4JO4 1 REMARK REVDAT 2 04-SEP-13 4JO4 1 JRNL REVDAT 1 31-JUL-13 4JO4 0 JRNL AUTH R.PAN,J.M.SAMPSON,Y.CHEN,M.VAINE,S.WANG,S.LU,X.P.KONG JRNL TITL RABBIT ANTI-HIV-1 MONOCLONAL ANTIBODIES RAISED BY JRNL TITL 2 IMMUNIZATION CAN MIMIC THE ANTIGEN-BINDING MODES OF JRNL TITL 3 ANTIBODIES DERIVED FROM HIV-1-INFECTED HUMANS. JRNL REF J.VIROL. V. 87 10221 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23864637 JRNL DOI 10.1128/JVI.00843-13 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2739 - 6.0497 0.99 2852 164 0.1926 0.2025 REMARK 3 2 6.0497 - 4.8048 1.00 2758 146 0.1512 0.1765 REMARK 3 3 4.8048 - 4.1983 1.00 2720 148 0.1319 0.1625 REMARK 3 4 4.1983 - 3.8148 1.00 2700 144 0.1518 0.2030 REMARK 3 5 3.8148 - 3.5416 1.00 2670 151 0.1724 0.1975 REMARK 3 6 3.5416 - 3.3329 1.00 2685 143 0.1798 0.2216 REMARK 3 7 3.3329 - 3.1661 1.00 2677 141 0.1880 0.2264 REMARK 3 8 3.1661 - 3.0283 1.00 2671 147 0.1911 0.2385 REMARK 3 9 3.0283 - 2.9118 1.00 2669 135 0.1891 0.2219 REMARK 3 10 2.9118 - 2.8114 1.00 2666 120 0.2021 0.2556 REMARK 3 11 2.8114 - 2.7235 1.00 2653 123 0.2143 0.2697 REMARK 3 12 2.7235 - 2.6457 1.00 2643 150 0.2129 0.2745 REMARK 3 13 2.6457 - 2.5760 1.00 2636 155 0.2119 0.2817 REMARK 3 14 2.5760 - 2.5132 1.00 2673 118 0.2252 0.3182 REMARK 3 15 2.5132 - 2.4561 1.00 2636 163 0.2325 0.2969 REMARK 3 16 2.4561 - 2.4038 0.99 2647 133 0.2332 0.2975 REMARK 3 17 2.4038 - 2.3557 1.00 2626 142 0.2360 0.2870 REMARK 3 18 2.3557 - 2.3113 0.99 2642 136 0.2313 0.3310 REMARK 3 19 2.3113 - 2.2700 0.99 2624 141 0.2379 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16750 REMARK 3 B22 (A**2) : 1.95730 REMARK 3 B33 (A**2) : -2.12480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6721 REMARK 3 ANGLE : 1.088 9174 REMARK 3 CHIRALITY : 0.070 1088 REMARK 3 PLANARITY : 0.004 1162 REMARK 3 DIHEDRAL : 14.954 2319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 38.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : 0.10700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 1.10500 REMARK 200 R SYM FOR SHELL (I) : 0.59300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM SULFATE, 1.7% PEG400, REMARK 280 85 MM HEPES, PH 7.5, 15% V/V GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.32450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.66850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.66850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.32450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH M 351 O HOH M 378 1.81 REMARK 500 O HOH M 458 O HOH M 478 1.88 REMARK 500 O HOH M 406 O HOH M 407 1.96 REMARK 500 O HOH I 503 O HOH I 526 1.96 REMARK 500 O HOH L 419 O HOH L 460 1.98 REMARK 500 O HOH M 435 O HOH I 545 2.01 REMARK 500 O HOH L 351 O HOH L 405 2.03 REMARK 500 O PHE H 100M O HOH H 498 2.03 REMARK 500 O HOH M 409 O HOH M 413 2.04 REMARK 500 O HOH H 589 O HOH H 596 2.08 REMARK 500 O PRO I 190 O HOH I 530 2.08 REMARK 500 NE2 GLN L 154 O HOH L 448 2.09 REMARK 500 O HOH L 362 O HOH L 367 2.10 REMARK 500 O HOH M 421 O HOH M 422 2.11 REMARK 500 O HOH M 357 O HOH I 502 2.11 REMARK 500 O HOH L 379 O HOH I 544 2.12 REMARK 500 O HOH L 392 O HOH H 584 2.12 REMARK 500 O HOH L 375 O HOH L 423 2.13 REMARK 500 O HOH M 382 O HOH I 501 2.14 REMARK 500 O HOH H 479 O HOH H 522 2.15 REMARK 500 O1 SO4 H 302 O HOH H 595 2.16 REMARK 500 O HOH L 371 O HOH L 373 2.16 REMARK 500 O HOH L 400 O HOH L 401 2.16 REMARK 500 OG1 THR H 61 O HOH H 518 2.17 REMARK 500 O HOH L 390 O HOH L 408 2.17 REMARK 500 O HOH M 418 O HOH M 419 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 465 O HOH M 454 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 53.62 34.03 REMARK 500 ALA L 51 -37.06 79.25 REMARK 500 ALA L 84 179.64 176.54 REMARK 500 LYS L 138 80.56 57.66 REMARK 500 ASN H 31 3.67 -66.55 REMARK 500 SER H 73 178.43 179.19 REMARK 500 PRO H 132 176.02 -41.79 REMARK 500 THR H 160 -35.71 -131.87 REMARK 500 SER H 186 -146.35 -160.05 REMARK 500 SER H 187 36.02 -75.02 REMARK 500 ASN M 31 -4.93 73.48 REMARK 500 ALA M 51 -39.62 70.55 REMARK 500 ALA M 84 178.64 176.49 REMARK 500 LYS M 138 78.13 52.72 REMARK 500 CYS M 170 -3.35 74.23 REMARK 500 ASN I 31 8.33 -63.05 REMARK 500 SER I 73 -176.62 -174.04 REMARK 500 VAL I 100B -72.43 -81.45 REMARK 500 SER I 133 -167.60 -79.76 REMARK 500 SER I 188 -87.78 -98.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE I 301 REMARK 610 1PE I 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE I 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE I 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 I 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JO1 RELATED DB: PDB REMARK 900 RELATED ID: 4JO2 RELATED DB: PDB REMARK 900 RELATED ID: 4JO3 RELATED DB: PDB DBREF 4JO4 L 1 211 PDB 4JO4 4JO4 1 211 DBREF 4JO4 M 1 211 PDB 4JO4 4JO4 1 211 DBREF 4JO4 H 2 210 PDB 4JO4 4JO4 2 210 DBREF 4JO4 I 2 210 PDB 4JO4 4JO4 2 210 SEQRES 1 L 214 ASP ILE VAL MET THR GLN THR PRO ALA SER VAL SER ALA SEQRES 2 L 214 ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN ALA SER SEQRES 3 L 214 GLU THR ILE SER ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 L 214 THR LEU ALA SER GLY VAL SER SER ARG PHE LYS GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 L 214 GLN CYS ASP ASP ALA ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 L 214 TYR SER ILE SER ASP ILE ASP ASN SER PHE GLY GLY GLY SEQRES 9 L 214 THR GLU VAL VAL VAL LYS GLY ASP PRO VAL ALA PRO THR SEQRES 10 L 214 VAL LEU ILE PHE PRO PRO ALA ALA ASP GLN VAL ALA THR SEQRES 11 L 214 GLY THR VAL THR ILE VAL CYS VAL ALA ASN LYS TYR PHE SEQRES 12 L 214 PRO ASP VAL THR VAL THR TRP GLU VAL ASP GLY THR THR SEQRES 13 L 214 GLN THR THR GLY ILE GLU ASN SER LYS THR PRO GLN ASN SEQRES 14 L 214 SER ALA ASP CYS THR TYR ASN LEU SER SER THR LEU THR SEQRES 15 L 214 LEU THR SER THR GLN TYR ASN SER HIS LYS GLU TYR THR SEQRES 16 L 214 CYS LYS VAL THR GLN GLY THR THR SER VAL VAL GLN SER SEQRES 17 L 214 PHE ASN ARG GLY ASP CYS SEQRES 1 H 227 GLN SER LEU GLU GLU SER GLY GLY ASP LEU VAL LYS PRO SEQRES 2 H 227 GLY ALA SER LEU THR LEU THR CYS THR ALA SER GLY PHE SEQRES 3 H 227 SER PHE THR ASN ASN TYR TYR MET CYS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP ILE ALA CYS ILE TYR SEQRES 5 H 227 GLY GLY GLY ARG ASP ILE VAL PHE TYR ALA THR TRP ALA SEQRES 6 H 227 LYS GLY ARG PHE THR ILE SER LYS THR SER SER THR THR SEQRES 7 H 227 VAL THR LEU GLN MET THR SER LEU THR ALA ALA ASP THR SEQRES 8 H 227 ALA THR TYR PHE CYS ALA ARG GLU ASN PHE ASP ALA VAL SEQRES 9 H 227 GLY VAL GLY GLY GLY THR TYR SER THR ASP TYR TYR PHE SEQRES 10 H 227 ASP LEU TRP GLY PRO GLY THR LEU VAL ILE VAL SER SER SEQRES 11 H 227 GLY GLN PRO LYS ALA PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 H 227 CYS CYS GLY ASP THR PRO SER ALA THR VAL THR LEU GLY SEQRES 13 H 227 CYS LEU VAL LYS GLY TYR LEU PRO GLU PRO VAL THR VAL SEQRES 14 H 227 THR TRP ASN SER GLY THR LEU THR ASN GLY VAL ARG THR SEQRES 15 H 227 PHE PRO SER VAL ARG GLN SER SER GLY LEU TYR SER LEU SEQRES 16 H 227 SER SER VAL VAL SER VAL THR SER SER SER GLN PRO VAL SEQRES 17 H 227 THR CYS ASN VAL ALA HIS PRO ALA THR ASN THR LYS VAL SEQRES 18 H 227 ASP LYS THR VAL ALA PRO SEQRES 1 M 214 ASP ILE VAL MET THR GLN THR PRO ALA SER VAL SER ALA SEQRES 2 M 214 ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN ALA SER SEQRES 3 M 214 GLU THR ILE SER ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 M 214 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 M 214 THR LEU ALA SER GLY VAL SER SER ARG PHE LYS GLY SER SEQRES 6 M 214 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 M 214 GLN CYS ASP ASP ALA ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 M 214 TYR SER ILE SER ASP ILE ASP ASN SER PHE GLY GLY GLY SEQRES 9 M 214 THR GLU VAL VAL VAL LYS GLY ASP PRO VAL ALA PRO THR SEQRES 10 M 214 VAL LEU ILE PHE PRO PRO ALA ALA ASP GLN VAL ALA THR SEQRES 11 M 214 GLY THR VAL THR ILE VAL CYS VAL ALA ASN LYS TYR PHE SEQRES 12 M 214 PRO ASP VAL THR VAL THR TRP GLU VAL ASP GLY THR THR SEQRES 13 M 214 GLN THR THR GLY ILE GLU ASN SER LYS THR PRO GLN ASN SEQRES 14 M 214 SER ALA ASP CYS THR TYR ASN LEU SER SER THR LEU THR SEQRES 15 M 214 LEU THR SER THR GLN TYR ASN SER HIS LYS GLU TYR THR SEQRES 16 M 214 CYS LYS VAL THR GLN GLY THR THR SER VAL VAL GLN SER SEQRES 17 M 214 PHE ASN ARG GLY ASP CYS SEQRES 1 I 227 GLN SER LEU GLU GLU SER GLY GLY ASP LEU VAL LYS PRO SEQRES 2 I 227 GLY ALA SER LEU THR LEU THR CYS THR ALA SER GLY PHE SEQRES 3 I 227 SER PHE THR ASN ASN TYR TYR MET CYS TRP VAL ARG GLN SEQRES 4 I 227 ALA PRO GLY LYS GLY LEU GLU TRP ILE ALA CYS ILE TYR SEQRES 5 I 227 GLY GLY GLY ARG ASP ILE VAL PHE TYR ALA THR TRP ALA SEQRES 6 I 227 LYS GLY ARG PHE THR ILE SER LYS THR SER SER THR THR SEQRES 7 I 227 VAL THR LEU GLN MET THR SER LEU THR ALA ALA ASP THR SEQRES 8 I 227 ALA THR TYR PHE CYS ALA ARG GLU ASN PHE ASP ALA VAL SEQRES 9 I 227 GLY VAL GLY GLY GLY THR TYR SER THR ASP TYR TYR PHE SEQRES 10 I 227 ASP LEU TRP GLY PRO GLY THR LEU VAL ILE VAL SER SER SEQRES 11 I 227 GLY GLN PRO LYS ALA PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 I 227 CYS CYS GLY ASP THR PRO SER ALA THR VAL THR LEU GLY SEQRES 13 I 227 CYS LEU VAL LYS GLY TYR LEU PRO GLU PRO VAL THR VAL SEQRES 14 I 227 THR TRP ASN SER GLY THR LEU THR ASN GLY VAL ARG THR SEQRES 15 I 227 PHE PRO SER VAL ARG GLN SER SER GLY LEU TYR SER LEU SEQRES 16 I 227 SER SER VAL VAL SER VAL THR SER SER SER GLN PRO VAL SEQRES 17 I 227 THR CYS ASN VAL ALA HIS PRO ALA THR ASN THR LYS VAL SEQRES 18 I 227 ASP LYS THR VAL ALA PRO HET 1PE H 301 38 HET SO4 H 302 5 HET 1PE I 301 23 HET 1PE I 302 23 HET SO4 I 303 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 5 1PE 3(C10 H22 O6) FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *730(H2 O) HELIX 1 1 GLN L 79 ALA L 83 5 5 HELIX 2 2 GLN L 124 THR L 127 5 4 HELIX 3 3 SER L 182 SER L 187 1 6 HELIX 4 4 GLY L 209 CYS L 211 5 3 HELIX 5 5 THR H 83 THR H 87 5 5 HELIX 6 6 SER H 156 THR H 158 5 3 HELIX 7 7 PRO H 198 ASN H 201 5 4 HELIX 8 8 GLN M 79 ALA M 83 5 5 HELIX 9 9 ALA M 121 THR M 127 5 7 HELIX 10 10 SER M 182 SER M 187 1 6 HELIX 11 11 THR I 83 THR I 87 5 5 HELIX 12 12 SER I 156 THR I 158 5 3 HELIX 13 13 PRO I 198 ASN I 201 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 A 4 GLU L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 N LYS L 63 O THR L 74 SHEET 1 B 6 SER L 10 ALA L 14 0 SHEET 2 B 6 THR L 102 LYS L 107 1 O VAL L 105 N VAL L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 B 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 THR L 129 TYR L 139 -1 O ASN L 137 N THR L 114 SHEET 3 C 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 134 SHEET 4 C 4 ILE L 158 LYS L 162 -1 N SER L 161 O SER L 175 SHEET 1 D 4 THR L 152 THR L 153 0 SHEET 2 D 4 THR L 144 VAL L 149 -1 N VAL L 149 O THR L 152 SHEET 3 D 4 GLU L 190 GLN L 197 -1 O LYS L 194 N THR L 146 SHEET 4 D 4 THR L 200 ASN L 207 -1 O THR L 200 N GLN L 197 SHEET 1 E 4 SER H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 E 4 THR H 76 MET H 81 -1 O MET H 81 N LEU H 18 SHEET 4 E 4 PHE H 67 SER H 73 -1 N THR H 68 O GLN H 80 SHEET 1 F 6 LEU H 11 VAL H 12 0 SHEET 2 F 6 THR H 107 VAL H 111 1 O ILE H 110 N VAL H 12 SHEET 3 F 6 ALA H 88 VAL H 100 -1 N TYR H 90 O THR H 107 SHEET 4 F 6 TYR H 34 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 F 6 GLU H 46 TYR H 52 -1 O ILE H 51 N MET H 35 SHEET 6 F 6 VAL H 57 TYR H 59 -1 O PHE H 58 N CYS H 50 SHEET 1 G 4 LEU H 11 VAL H 12 0 SHEET 2 G 4 THR H 107 VAL H 111 1 O ILE H 110 N VAL H 12 SHEET 3 G 4 ALA H 88 VAL H 100 -1 N TYR H 90 O THR H 107 SHEET 4 G 4 TYR H 100G TRP H 103 -1 O THR H 100I N ASP H 98 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 VAL H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 H 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 H 4 VAL H 163 THR H 165 -1 N ARG H 164 O VAL H 181 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 VAL H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 I 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 I 4 VAL H 169 ARG H 170 -1 N VAL H 169 O SER H 177 SHEET 1 J 3 THR H 151 TRP H 154 0 SHEET 2 J 3 VAL H 191 HIS H 197 -1 O ASN H 194 N THR H 153 SHEET 3 J 3 THR H 202 VAL H 208 -1 O VAL H 204 N VAL H 195 SHEET 1 K 4 MET M 4 THR M 7 0 SHEET 2 K 4 VAL M 19 ALA M 25 -1 O ASN M 22 N THR M 7 SHEET 3 K 4 GLU M 70 ILE M 75 -1 O TYR M 71 N CYS M 23 SHEET 4 K 4 PHE M 62 SER M 67 -1 N LYS M 63 O THR M 74 SHEET 1 L 6 SER M 10 ALA M 14 0 SHEET 2 L 6 THR M 102 LYS M 107 1 O VAL M 105 N VAL M 11 SHEET 3 L 6 ALA M 84 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 L 6 LEU M 33 GLN M 38 -1 N GLN M 38 O THR M 85 SHEET 5 L 6 LYS M 45 TYR M 49 -1 O LEU M 47 N TRP M 35 SHEET 6 L 6 THR M 53 LEU M 54 -1 O THR M 53 N TYR M 49 SHEET 1 M 4 THR M 114 PHE M 118 0 SHEET 2 M 4 THR M 129 TYR M 139 -1 O VAL M 135 N LEU M 116 SHEET 3 M 4 TYR M 172 THR M 181 -1 O LEU M 180 N VAL M 130 SHEET 4 M 4 ILE M 158 LYS M 162 -1 N GLU M 159 O THR M 177 SHEET 1 N 4 THR M 152 GLN M 154 0 SHEET 2 N 4 THR M 144 VAL M 149 -1 N VAL M 149 O THR M 152 SHEET 3 N 4 GLU M 190 GLN M 197 -1 O LYS M 194 N THR M 146 SHEET 4 N 4 THR M 200 ASN M 207 -1 O THR M 200 N GLN M 197 SHEET 1 O 4 SER I 3 SER I 7 0 SHEET 2 O 4 LEU I 18 SER I 25 -1 O THR I 23 N GLU I 5 SHEET 3 O 4 THR I 76 MET I 81 -1 O MET I 81 N LEU I 18 SHEET 4 O 4 PHE I 67 LYS I 71 -1 N THR I 68 O GLN I 80 SHEET 1 P 6 LEU I 11 VAL I 12 0 SHEET 2 P 6 THR I 107 VAL I 111 1 O ILE I 110 N VAL I 12 SHEET 3 P 6 ALA I 88 VAL I 100 -1 N TYR I 90 O THR I 107 SHEET 4 P 6 TYR I 33 GLN I 39 -1 N VAL I 37 O PHE I 91 SHEET 5 P 6 LEU I 45 TYR I 52 -1 O GLU I 46 N ARG I 38 SHEET 6 P 6 VAL I 57 TYR I 59 -1 O PHE I 58 N CYS I 50 SHEET 1 Q 4 LEU I 11 VAL I 12 0 SHEET 2 Q 4 THR I 107 VAL I 111 1 O ILE I 110 N VAL I 12 SHEET 3 Q 4 ALA I 88 VAL I 100 -1 N TYR I 90 O THR I 107 SHEET 4 Q 4 TYR I 100G TRP I 103 -1 O THR I 100I N ASP I 98 SHEET 1 R 4 SER I 120 LEU I 124 0 SHEET 2 R 4 VAL I 136 TYR I 145 -1 O GLY I 139 N LEU I 124 SHEET 3 R 4 TYR I 176 VAL I 184 -1 O VAL I 182 N LEU I 138 SHEET 4 R 4 VAL I 163 THR I 165 -1 N ARG I 164 O VAL I 181 SHEET 1 S 4 SER I 120 LEU I 124 0 SHEET 2 S 4 VAL I 136 TYR I 145 -1 O GLY I 139 N LEU I 124 SHEET 3 S 4 TYR I 176 VAL I 184 -1 O VAL I 182 N LEU I 138 SHEET 4 S 4 VAL I 169 ARG I 170 -1 N VAL I 169 O SER I 177 SHEET 1 T 3 THR I 151 TRP I 154 0 SHEET 2 T 3 VAL I 191 HIS I 197 -1 O ASN I 194 N THR I 153 SHEET 3 T 3 THR I 202 VAL I 208 -1 O VAL I 208 N VAL I 191 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 2 CYS L 80 CYS L 170 1555 1555 2.03 SSBOND 3 CYS L 134 CYS L 193 1555 1555 2.02 SSBOND 4 CYS L 211 CYS H 127 1555 1555 2.05 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 6 CYS H 35A CYS H 50 1555 1555 2.10 SSBOND 7 CYS H 140 CYS H 193 1555 1555 2.05 SSBOND 8 CYS M 23 CYS M 88 1555 1555 2.07 SSBOND 9 CYS M 80 CYS M 170 1555 1555 2.07 SSBOND 10 CYS M 134 CYS M 193 1555 1555 2.02 SSBOND 11 CYS M 211 CYS I 127 1555 1555 2.04 SSBOND 12 CYS I 22 CYS I 92 1555 1555 2.04 SSBOND 13 CYS I 35A CYS I 50 1555 1555 2.07 SSBOND 14 CYS I 140 CYS I 193 1555 1555 2.04 CISPEP 1 THR L 7 PRO L 8 0 -10.01 CISPEP 2 PHE L 140 PRO L 141 0 2.33 CISPEP 3 GLY H 100C GLY H 100D 0 -3.21 CISPEP 4 LEU H 146 PRO H 147 0 -1.66 CISPEP 5 GLU H 148 PRO H 149 0 -0.62 CISPEP 6 THR M 7 PRO M 8 0 -6.01 CISPEP 7 PHE M 140 PRO M 141 0 0.94 CISPEP 8 GLY I 100D GLY I 100E 0 4.36 CISPEP 9 LEU I 146 PRO I 147 0 -0.69 CISPEP 10 GLU I 148 PRO I 149 0 -4.87 SITE 1 AC1 8 TYR H 52 ARG H 54 PHE H 97 THR H 100F SITE 2 AC1 8 TYR H 100G SER H 100H HOH H 530 HOH H 605 SITE 1 AC2 7 ASN H 31 TYR H 52 GLY H 52B GLY H 53 SITE 2 AC2 7 ARG H 54 HOH H 530 HOH H 595 SITE 1 AC3 4 ARG I 54 THR I 100F TYR I 100G SER I 100H SITE 1 AC4 8 SER H 120 VAL H 121 ALA I 118 PRO I 119 SITE 2 AC4 8 SER I 120 VAL I 121 HOH I 535 HOH L 404 SITE 1 AC5 5 ASN I 31 TYR I 52 GLY I 52B GLY I 53 SITE 2 AC5 5 ARG I 54 CRYST1 70.649 119.690 135.337 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007389 0.00000