data_4JO9 # _entry.id 4JO9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JO9 pdb_00004jo9 10.2210/pdb4jo9/pdb RCSB RCSB078295 ? ? WWPDB D_1000078295 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-17 2 'Structure model' 1 1 2015-09-02 3 'Structure model' 1 2 2016-02-03 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 4JO9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JNU . unspecified PDB 4JNV . unspecified PDB 4JO7 . unspecified PDB 4JQ5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stuwe, T.' 1 'Bley, C.J.' 2 'Mayo, D.J.' 3 'Hoelz, A.' 4 # _citation.id primary _citation.title 'Architecture of the fungal nuclear pore inner ring complex.' _citation.journal_abbrev Science _citation.journal_volume 350 _citation.page_first 56 _citation.page_last 64 _citation.year 2015 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26316600 _citation.pdbx_database_id_DOI 10.1126/science.aac9176 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stuwe, T.' 1 ? primary 'Bley, C.J.' 2 ? primary 'Thierbach, K.' 3 ? primary 'Petrovic, S.' 4 ? primary 'Schilbach, S.' 5 ? primary 'Mayo, D.J.' 6 ? primary 'Perriches, T.' 7 ? primary 'Rundlet, E.J.' 8 ? primary 'Jeon, Y.E.' 9 ? primary 'Collins, L.N.' 10 ? primary 'Huber, F.M.' 11 ? primary 'Lin, D.H.' 12 ? primary 'Paduch, M.' 13 ? primary 'Koide, A.' 14 ? primary 'Lu, V.' 15 ? primary 'Fischer, J.' 16 ? primary 'Hurt, E.' 17 ? primary 'Koide, S.' 18 ? primary 'Kossiakoff, A.A.' 19 ? primary 'Hoelz, A.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoporin p54' 4729.410 2 ? ? 'UNP residues 453-491' ? 2 polymer man 'Nucleoporin p58/p45' 10195.580 1 ? ? 'UNP residues 341-426' ? 3 water nat water 18.015 17 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Nup54, 54 kDa nucleoporin' 2 'Nup58, Nucleoporin-like protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV SYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV A,C ? 2 'polypeptide(L)' no no ;SAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLG YRKMFLG ; ;SAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLG YRKMFLG ; B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 TYR n 1 4 ILE n 1 5 ASP n 1 6 ALA n 1 7 ASP n 1 8 LEU n 1 9 LEU n 1 10 ARG n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 GLN n 1 15 HIS n 1 16 LEU n 1 17 LYS n 1 18 GLN n 1 19 GLN n 1 20 GLN n 1 21 GLU n 1 22 GLY n 1 23 LEU n 1 24 SER n 1 25 HIS n 1 26 LEU n 1 27 ILE n 1 28 SER n 1 29 ILE n 1 30 ILE n 1 31 LYS n 1 32 ASP n 1 33 ASP n 1 34 LEU n 1 35 GLU n 1 36 ASP n 1 37 ILE n 1 38 LYS n 1 39 LEU n 1 40 VAL n 2 1 SER n 2 2 ALA n 2 3 PRO n 2 4 ALA n 2 5 ASP n 2 6 TYR n 2 7 PHE n 2 8 ARG n 2 9 ILE n 2 10 LEU n 2 11 VAL n 2 12 GLN n 2 13 GLN n 2 14 PHE n 2 15 GLU n 2 16 VAL n 2 17 GLN n 2 18 LEU n 2 19 GLN n 2 20 GLN n 2 21 TYR n 2 22 ARG n 2 23 GLN n 2 24 GLN n 2 25 ILE n 2 26 GLU n 2 27 GLU n 2 28 LEU n 2 29 GLU n 2 30 ASN n 2 31 HIS n 2 32 LEU n 2 33 ALA n 2 34 THR n 2 35 GLN n 2 36 ALA n 2 37 ASN n 2 38 ASN n 2 39 SER n 2 40 HIS n 2 41 ILE n 2 42 THR n 2 43 PRO n 2 44 GLN n 2 45 ASP n 2 46 LEU n 2 47 SER n 2 48 MET n 2 49 ALA n 2 50 MET n 2 51 GLN n 2 52 LYS n 2 53 ILE n 2 54 TYR n 2 55 GLN n 2 56 THR n 2 57 PHE n 2 58 VAL n 2 59 ALA n 2 60 LEU n 2 61 ALA n 2 62 ALA n 2 63 GLN n 2 64 LEU n 2 65 GLN n 2 66 SER n 2 67 ILE n 2 68 HIS n 2 69 GLU n 2 70 ASN n 2 71 VAL n 2 72 LYS n 2 73 VAL n 2 74 LEU n 2 75 LYS n 2 76 GLU n 2 77 GLN n 2 78 TYR n 2 79 LEU n 2 80 GLY n 2 81 TYR n 2 82 ARG n 2 83 LYS n 2 84 MET n 2 85 PHE n 2 86 LEU n 2 87 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? NUP54 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'NUPL1, KIAA0410' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 455 ? ? ? A . n A 1 2 TYR 2 456 ? ? ? A . n A 1 3 TYR 3 457 457 TYR TYR A . n A 1 4 ILE 4 458 458 ILE ILE A . n A 1 5 ASP 5 459 459 ASP ASP A . n A 1 6 ALA 6 460 460 ALA ALA A . n A 1 7 ASP 7 461 461 ASP ASP A . n A 1 8 LEU 8 462 462 LEU LEU A . n A 1 9 LEU 9 463 463 LEU LEU A . n A 1 10 ARG 10 464 464 ARG ARG A . n A 1 11 GLU 11 465 465 GLU GLU A . n A 1 12 ILE 12 466 466 ILE ILE A . n A 1 13 LYS 13 467 467 LYS LYS A . n A 1 14 GLN 14 468 468 GLN GLN A . n A 1 15 HIS 15 469 469 HIS HIS A . n A 1 16 LEU 16 470 470 LEU LEU A . n A 1 17 LYS 17 471 471 LYS LYS A . n A 1 18 GLN 18 472 472 GLN GLN A . n A 1 19 GLN 19 473 473 GLN GLN A . n A 1 20 GLN 20 474 474 GLN GLN A . n A 1 21 GLU 21 475 475 GLU GLU A . n A 1 22 GLY 22 476 476 GLY GLY A . n A 1 23 LEU 23 477 477 LEU LEU A . n A 1 24 SER 24 478 478 SER SER A . n A 1 25 HIS 25 479 479 HIS HIS A . n A 1 26 LEU 26 480 480 LEU LEU A . n A 1 27 ILE 27 481 481 ILE ILE A . n A 1 28 SER 28 482 482 SER SER A . n A 1 29 ILE 29 483 483 ILE ILE A . n A 1 30 ILE 30 484 484 ILE ILE A . n A 1 31 LYS 31 485 485 LYS LYS A . n A 1 32 ASP 32 486 486 ASP ASP A . n A 1 33 ASP 33 487 487 ASP ASP A . n A 1 34 LEU 34 488 488 LEU LEU A . n A 1 35 GLU 35 489 489 GLU GLU A . n A 1 36 ASP 36 490 490 ASP ASP A . n A 1 37 ILE 37 491 491 ILE ILE A . n A 1 38 LYS 38 492 492 LYS LYS A . n A 1 39 LEU 39 493 493 LEU LEU A . n A 1 40 VAL 40 494 494 VAL VAL A . n B 2 1 SER 1 326 ? ? ? B . n B 2 2 ALA 2 327 ? ? ? B . n B 2 3 PRO 3 328 328 PRO PRO B . n B 2 4 ALA 4 329 329 ALA ALA B . n B 2 5 ASP 5 330 330 ASP ASP B . n B 2 6 TYR 6 331 331 TYR TYR B . n B 2 7 PHE 7 332 332 PHE PHE B . n B 2 8 ARG 8 333 333 ARG ARG B . n B 2 9 ILE 9 334 334 ILE ILE B . n B 2 10 LEU 10 335 335 LEU LEU B . n B 2 11 VAL 11 336 336 VAL VAL B . n B 2 12 GLN 12 337 337 GLN GLN B . n B 2 13 GLN 13 338 338 GLN GLN B . n B 2 14 PHE 14 339 339 PHE PHE B . n B 2 15 GLU 15 340 340 GLU GLU B . n B 2 16 VAL 16 341 341 VAL VAL B . n B 2 17 GLN 17 342 342 GLN GLN B . n B 2 18 LEU 18 343 343 LEU LEU B . n B 2 19 GLN 19 344 344 GLN GLN B . n B 2 20 GLN 20 345 345 GLN GLN B . n B 2 21 TYR 21 346 346 TYR TYR B . n B 2 22 ARG 22 347 347 ARG ARG B . n B 2 23 GLN 23 348 348 GLN GLN B . n B 2 24 GLN 24 349 349 GLN GLN B . n B 2 25 ILE 25 350 350 ILE ILE B . n B 2 26 GLU 26 351 351 GLU GLU B . n B 2 27 GLU 27 352 352 GLU GLU B . n B 2 28 LEU 28 353 353 LEU LEU B . n B 2 29 GLU 29 354 354 GLU GLU B . n B 2 30 ASN 30 355 355 ASN ASN B . n B 2 31 HIS 31 356 356 HIS HIS B . n B 2 32 LEU 32 357 357 LEU LEU B . n B 2 33 ALA 33 358 358 ALA ALA B . n B 2 34 THR 34 359 359 THR THR B . n B 2 35 GLN 35 360 360 GLN GLN B . n B 2 36 ALA 36 361 361 ALA ALA B . n B 2 37 ASN 37 362 362 ASN ASN B . n B 2 38 ASN 38 363 363 ASN ASN B . n B 2 39 SER 39 364 364 SER SER B . n B 2 40 HIS 40 365 365 HIS HIS B . n B 2 41 ILE 41 366 366 ILE ILE B . n B 2 42 THR 42 367 367 THR THR B . n B 2 43 PRO 43 368 368 PRO PRO B . n B 2 44 GLN 44 369 369 GLN GLN B . n B 2 45 ASP 45 370 370 ASP ASP B . n B 2 46 LEU 46 371 371 LEU LEU B . n B 2 47 SER 47 372 372 SER SER B . n B 2 48 MET 48 373 373 MET MET B . n B 2 49 ALA 49 374 374 ALA ALA B . n B 2 50 MET 50 375 375 MET MET B . n B 2 51 GLN 51 376 376 GLN GLN B . n B 2 52 LYS 52 377 377 LYS LYS B . n B 2 53 ILE 53 378 378 ILE ILE B . n B 2 54 TYR 54 379 379 TYR TYR B . n B 2 55 GLN 55 380 380 GLN GLN B . n B 2 56 THR 56 381 381 THR THR B . n B 2 57 PHE 57 382 382 PHE PHE B . n B 2 58 VAL 58 383 383 VAL VAL B . n B 2 59 ALA 59 384 384 ALA ALA B . n B 2 60 LEU 60 385 385 LEU LEU B . n B 2 61 ALA 61 386 386 ALA ALA B . n B 2 62 ALA 62 387 387 ALA ALA B . n B 2 63 GLN 63 388 388 GLN GLN B . n B 2 64 LEU 64 389 389 LEU LEU B . n B 2 65 GLN 65 390 390 GLN GLN B . n B 2 66 SER 66 391 391 SER SER B . n B 2 67 ILE 67 392 392 ILE ILE B . n B 2 68 HIS 68 393 393 HIS HIS B . n B 2 69 GLU 69 394 394 GLU GLU B . n B 2 70 ASN 70 395 395 ASN ASN B . n B 2 71 VAL 71 396 396 VAL VAL B . n B 2 72 LYS 72 397 397 LYS LYS B . n B 2 73 VAL 73 398 398 VAL VAL B . n B 2 74 LEU 74 399 399 LEU LEU B . n B 2 75 LYS 75 400 400 LYS LYS B . n B 2 76 GLU 76 401 401 GLU GLU B . n B 2 77 GLN 77 402 402 GLN GLN B . n B 2 78 TYR 78 403 403 TYR TYR B . n B 2 79 LEU 79 404 404 LEU LEU B . n B 2 80 GLY 80 405 405 GLY GLY B . n B 2 81 TYR 81 406 406 TYR TYR B . n B 2 82 ARG 82 407 407 ARG ARG B . n B 2 83 LYS 83 408 408 LYS LYS B . n B 2 84 MET 84 409 409 MET MET B . n B 2 85 PHE 85 410 410 PHE PHE B . n B 2 86 LEU 86 411 411 LEU LEU B . n B 2 87 GLY 87 412 412 GLY GLY B . n C 1 1 SER 1 455 455 SER SER C . n C 1 2 TYR 2 456 456 TYR TYR C . n C 1 3 TYR 3 457 457 TYR TYR C . n C 1 4 ILE 4 458 458 ILE ILE C . n C 1 5 ASP 5 459 459 ASP ASP C . n C 1 6 ALA 6 460 460 ALA ALA C . n C 1 7 ASP 7 461 461 ASP ASP C . n C 1 8 LEU 8 462 462 LEU LEU C . n C 1 9 LEU 9 463 463 LEU LEU C . n C 1 10 ARG 10 464 464 ARG ARG C . n C 1 11 GLU 11 465 465 GLU GLU C . n C 1 12 ILE 12 466 466 ILE ILE C . n C 1 13 LYS 13 467 467 LYS LYS C . n C 1 14 GLN 14 468 468 GLN GLN C . n C 1 15 HIS 15 469 469 HIS HIS C . n C 1 16 LEU 16 470 470 LEU LEU C . n C 1 17 LYS 17 471 471 LYS LYS C . n C 1 18 GLN 18 472 472 GLN GLN C . n C 1 19 GLN 19 473 473 GLN GLN C . n C 1 20 GLN 20 474 474 GLN GLN C . n C 1 21 GLU 21 475 475 GLU GLU C . n C 1 22 GLY 22 476 476 GLY GLY C . n C 1 23 LEU 23 477 477 LEU LEU C . n C 1 24 SER 24 478 478 SER SER C . n C 1 25 HIS 25 479 479 HIS HIS C . n C 1 26 LEU 26 480 480 LEU LEU C . n C 1 27 ILE 27 481 481 ILE ILE C . n C 1 28 SER 28 482 482 SER SER C . n C 1 29 ILE 29 483 483 ILE ILE C . n C 1 30 ILE 30 484 484 ILE ILE C . n C 1 31 LYS 31 485 485 LYS LYS C . n C 1 32 ASP 32 486 486 ASP ASP C . n C 1 33 ASP 33 487 487 ASP ASP C . n C 1 34 LEU 34 488 488 LEU LEU C . n C 1 35 GLU 35 489 489 GLU GLU C . n C 1 36 ASP 36 490 490 ASP ASP C . n C 1 37 ILE 37 491 491 ILE ILE C . n C 1 38 LYS 38 492 492 LYS LYS C . n C 1 39 LEU 39 493 ? ? ? C . n C 1 40 VAL 40 494 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 501 1 HOH HOH A . D 3 HOH 2 502 2 HOH HOH A . D 3 HOH 3 503 4 HOH HOH A . D 3 HOH 4 504 6 HOH HOH A . D 3 HOH 5 505 7 HOH HOH A . D 3 HOH 6 506 9 HOH HOH A . D 3 HOH 7 507 10 HOH HOH A . D 3 HOH 8 508 15 HOH HOH A . D 3 HOH 9 509 16 HOH HOH A . E 3 HOH 1 501 11 HOH HOH B . E 3 HOH 2 502 14 HOH HOH B . F 3 HOH 1 501 3 HOH HOH C . F 3 HOH 2 502 5 HOH HOH C . F 3 HOH 3 503 8 HOH HOH C . F 3 HOH 4 504 12 HOH HOH C . F 3 HOH 5 505 13 HOH HOH C . F 3 HOH 6 506 17 HOH HOH C . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _cell.length_a 55.483 _cell.length_b 55.483 _cell.length_c 191.160 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4JO9 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 4JO9 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 91 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4JO9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.74 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 3.8 _exptl_crystal_grow.temp 294.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M sodium citrate, pH 3.8, 0.07 M calcium chloride, VAPOR DIFFUSION, temperature 294.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-05-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0001 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0001 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-2 # _reflns.entry_id 4JO9 _reflns.B_iso_Wilson_estimate 46.290 _reflns.observed_criterion_sigma_F 2.1 _reflns.observed_criterion_sigma_I 2.1 _reflns.d_resolution_high 2.499 _reflns.d_resolution_low 50.0 _reflns.number_all 11003 _reflns.number_obs 11003 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.499 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JO9 _refine.ls_d_res_high 2.499 _refine.ls_d_res_low 47.79 _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.24 _refine.ls_number_reflns_obs 10891 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2513 _refine.ls_R_factor_R_work 0.2465 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2940 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.03 _refine.ls_number_reflns_R_free 1092 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 86.2208 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.6780 _refine.B_iso_max 166.200 _refine.B_iso_min 39.040 _refine.pdbx_overall_phase_error 35.9000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.510 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1338 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1355 _refine_hist.d_res_high 2.499 _refine_hist.d_res_low 47.79 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1356 0.002 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1822 0.437 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 206 0.028 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 234 0.001 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 524 14.845 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.4990 2.6128 8 90.0 1088 . 0.3481 0.4663 . 121 . 1209 . . 'X-RAY DIFFRACTION' 2.6128 2.7505 8 99.0 1186 . 0.3092 0.3912 . 133 . 1319 . . 'X-RAY DIFFRACTION' 2.7505 2.9228 8 99.0 1205 . 0.2875 0.3532 . 136 . 1341 . . 'X-RAY DIFFRACTION' 2.9228 3.1484 8 99.0 1203 . 0.2715 0.3398 . 134 . 1337 . . 'X-RAY DIFFRACTION' 3.1484 3.4652 8 100.0 1230 . 0.2672 0.3006 . 136 . 1366 . . 'X-RAY DIFFRACTION' 3.4652 3.9664 8 100.0 1250 . 0.2228 0.2653 . 139 . 1389 . . 'X-RAY DIFFRACTION' 3.9664 4.9964 8 100.0 1262 . 0.1959 0.2105 . 140 . 1402 . . 'X-RAY DIFFRACTION' 4.9964 47.7987 8 100.0 1375 . 0.2530 0.3083 . 153 . 1528 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JO9 _struct.title 'Crystal structure of the human Nup49CCS2+3* Nup57CCS3* complex 1:2 stoichiometry' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JO9 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'nucleocytoplasmic transport, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 3 ? E N N 3 ? F N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NUP54_HUMAN Q7Z3B4 1 YYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV 453 ? 2 UNP NUPL1_HUMAN Q9BVL2 2 ;APADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY RKMFLG ; 341 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JO9 A 2 ? 40 ? Q7Z3B4 453 ? 491 ? 456 494 2 2 4JO9 B 2 ? 87 ? Q9BVL2 341 ? 426 ? 327 412 3 1 4JO9 C 2 ? 40 ? Q7Z3B4 453 ? 491 ? 456 494 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JO9 SER A 1 ? UNP Q7Z3B4 ? ? 'expression tag' 455 1 2 4JO9 SER B 1 ? UNP Q9BVL2 ? ? 'expression tag' 326 2 3 4JO9 SER C 1 ? UNP Q7Z3B4 ? ? 'expression tag' 455 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3790 ? 1 MORE -37 ? 1 'SSA (A^2)' 11310 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? VAL A 40 ? ASP A 459 VAL A 494 1 ? 36 HELX_P HELX_P2 2 ALA B 4 ? THR B 34 ? ALA B 329 THR B 359 1 ? 31 HELX_P HELX_P3 3 THR B 34 ? SER B 39 ? THR B 359 SER B 364 1 ? 6 HELX_P HELX_P4 4 THR B 42 ? LEU B 86 ? THR B 367 LEU B 411 1 ? 45 HELX_P HELX_P5 5 ASP C 5 ? GLN C 19 ? ASP C 459 GLN C 473 1 ? 15 HELX_P HELX_P6 6 GLY C 22 ? LYS C 38 ? GLY C 476 LYS C 492 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 3 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 457 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ILE _struct_mon_prot_cis.pdbx_label_seq_id_2 4 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ILE _struct_mon_prot_cis.pdbx_auth_seq_id_2 458 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 455 ? A SER 1 2 1 Y 1 A TYR 456 ? A TYR 2 3 1 Y 1 B SER 326 ? B SER 1 4 1 Y 1 B ALA 327 ? B ALA 2 5 1 Y 1 C LEU 493 ? C LEU 39 6 1 Y 1 C VAL 494 ? C VAL 40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TYR N N N N 307 TYR CA C N S 308 TYR C C N N 309 TYR O O N N 310 TYR CB C N N 311 TYR CG C Y N 312 TYR CD1 C Y N 313 TYR CD2 C Y N 314 TYR CE1 C Y N 315 TYR CE2 C Y N 316 TYR CZ C Y N 317 TYR OH O N N 318 TYR OXT O N N 319 TYR H H N N 320 TYR H2 H N N 321 TYR HA H N N 322 TYR HB2 H N N 323 TYR HB3 H N N 324 TYR HD1 H N N 325 TYR HD2 H N N 326 TYR HE1 H N N 327 TYR HE2 H N N 328 TYR HH H N N 329 TYR HXT H N N 330 VAL N N N N 331 VAL CA C N S 332 VAL C C N N 333 VAL O O N N 334 VAL CB C N N 335 VAL CG1 C N N 336 VAL CG2 C N N 337 VAL OXT O N N 338 VAL H H N N 339 VAL H2 H N N 340 VAL HA H N N 341 VAL HB H N N 342 VAL HG11 H N N 343 VAL HG12 H N N 344 VAL HG13 H N N 345 VAL HG21 H N N 346 VAL HG22 H N N 347 VAL HG23 H N N 348 VAL HXT H N N 349 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TYR N CA sing N N 293 TYR N H sing N N 294 TYR N H2 sing N N 295 TYR CA C sing N N 296 TYR CA CB sing N N 297 TYR CA HA sing N N 298 TYR C O doub N N 299 TYR C OXT sing N N 300 TYR CB CG sing N N 301 TYR CB HB2 sing N N 302 TYR CB HB3 sing N N 303 TYR CG CD1 doub Y N 304 TYR CG CD2 sing Y N 305 TYR CD1 CE1 sing Y N 306 TYR CD1 HD1 sing N N 307 TYR CD2 CE2 doub Y N 308 TYR CD2 HD2 sing N N 309 TYR CE1 CZ doub Y N 310 TYR CE1 HE1 sing N N 311 TYR CE2 CZ sing Y N 312 TYR CE2 HE2 sing N N 313 TYR CZ OH sing N N 314 TYR OH HH sing N N 315 TYR OXT HXT sing N N 316 VAL N CA sing N N 317 VAL N H sing N N 318 VAL N H2 sing N N 319 VAL CA C sing N N 320 VAL CA CB sing N N 321 VAL CA HA sing N N 322 VAL C O doub N N 323 VAL C OXT sing N N 324 VAL CB CG1 sing N N 325 VAL CB CG2 sing N N 326 VAL CB HB sing N N 327 VAL CG1 HG11 sing N N 328 VAL CG1 HG12 sing N N 329 VAL CG1 HG13 sing N N 330 VAL CG2 HG21 sing N N 331 VAL CG2 HG22 sing N N 332 VAL CG2 HG23 sing N N 333 VAL OXT HXT sing N N 334 # _atom_sites.entry_id 4JO9 _atom_sites.fract_transf_matrix[1][1] 0.018024 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018024 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005231 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_