HEADER VIRAL PROTEIN/IMMUNE SYSTEM 19-MAR-13 4JPW TITLE CRYSTAL STRUCTURE OF BROADLY AND POTENTLY NEUTRALIZING ANTIBODY 12A21 TITLE 2 IN COMPLEX WITH HIV-1 STRAIN 93TH057 GP120 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CLADE A/E STRAIN 73TH057 GP120 WITH MUTATION H375S; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF ANTIBODY 12A21; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF ANTIBODY 12A21; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HIV, GP120, CD4-BINDING SITE, 12A21, NEUTRALIZATION, VACCINE, KEYWDS 2 ANTIBODY, ENVELOPE PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.ACHARYA,T.LUONGO,T.ZHOU,P.D.KWONG REVDAT 5 20-NOV-24 4JPW 1 REMARK REVDAT 4 20-SEP-23 4JPW 1 HETSYN REVDAT 3 29-JUL-20 4JPW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 21-AUG-13 4JPW 1 AUTHOR JRNL REMARK REVDAT 1 17-APR-13 4JPW 0 JRNL AUTH F.KLEIN,R.DISKIN,J.F.SCHEID,C.GAEBLER,H.MOUQUET, JRNL AUTH 2 I.S.GEORGIEV,M.PANCERA,T.ZHOU,R.B.INCESU,B.Z.FU, JRNL AUTH 3 P.N.GNANAPRAGASAM,T.Y.OLIVEIRA,M.S.SEAMAN,P.D.KWONG, JRNL AUTH 4 P.J.BJORKMAN,M.C.NUSSENZWEIG JRNL TITL SOMATIC MUTATIONS OF THE IMMUNOGLOBULIN FRAMEWORK ARE JRNL TITL 2 GENERALLY REQUIRED FOR BROAD AND POTENT HIV-1 JRNL TITL 3 NEUTRALIZATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 126 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23540694 JRNL DOI 10.1016/J.CELL.2013.03.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.ZHOU,J.ZHU,X.WU,S.MOQUIN,B.ZHANG,P.ACHARYA,I.S.GEORGIEV, REMARK 1 AUTH 2 H.R.ALTAE-TRAN,G.Y.CHUANG,M.G.JOYCE,Y.DO KWON,N.S.LONGO, REMARK 1 AUTH 3 M.K.LOUDER,T.LUONGO,K.MCKEE,C.A.SCHRAMM,J.SKINNER,Y.YANG, REMARK 1 AUTH 4 Z.YANG,Z.ZHANG,A.ZHENG,M.BONSIGNORI,B.F.HAYNES,J.F.SCHEID, REMARK 1 AUTH 5 M.C.NUSSENZWEIG,M.SIMEK,D.R.BURTON,W.C.KOFF,J.C.MULLIKIN, REMARK 1 AUTH 6 M.CONNORS,L.SHAPIRO,G.J.NABEL,J.R.MASCOLA,P.D.KWONG REMARK 1 TITL MULTIDONOR ANALYSIS REVEALS STRUCTURAL ELEMENTS, GENETIC REMARK 1 TITL 2 DETERMINANTS, AND MATURATION PATHWAY FOR HIV-1 REMARK 1 TITL 3 NEUTRALIZATION BY VRC01-CLASS ANTIBODIES. REMARK 1 REF IMMUNITY 2013 REMARK 1 REFN ISSN 1074-7613 REMARK 1 PMID 23911655 REMARK 1 DOI 10.1016/J.IMMUNI.2013.04.012 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 19490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4468 - 5.5507 0.99 2860 133 0.2041 0.2467 REMARK 3 2 5.5507 - 4.4073 1.00 2726 158 0.1629 0.2209 REMARK 3 3 4.4073 - 3.8507 1.00 2725 132 0.1814 0.2222 REMARK 3 4 3.8507 - 3.4988 1.00 2678 155 0.2104 0.2939 REMARK 3 5 3.4988 - 3.2481 0.99 2670 140 0.2442 0.2925 REMARK 3 6 3.2481 - 3.0567 0.96 2574 142 0.2618 0.3706 REMARK 3 7 3.0567 - 2.9036 0.85 2270 127 0.3039 0.3605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 36.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.45200 REMARK 3 B22 (A**2) : -4.16700 REMARK 3 B33 (A**2) : -10.28500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6309 REMARK 3 ANGLE : 0.596 8562 REMARK 3 CHIRALITY : 0.038 973 REMARK 3 PLANARITY : 0.003 1085 REMARK 3 DIHEDRAL : 12.387 2315 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN G AND (RESID 44:253 OR RESID 476:492) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6236 -30.6349 -44.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.4884 T22: 0.3529 REMARK 3 T33: 0.3873 T12: 0.0637 REMARK 3 T13: -0.1293 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.5920 L22: 5.8136 REMARK 3 L33: 5.7252 L12: 0.8442 REMARK 3 L13: -3.3359 L23: -0.7858 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: -0.1592 S13: -0.4700 REMARK 3 S21: -0.0657 S22: 0.1058 S23: 0.2156 REMARK 3 S31: 0.4521 S32: -0.2972 S33: 0.0790 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN G AND RESID 254:475 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2822 -7.8367 -47.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.4547 T22: 0.2844 REMARK 3 T33: 0.4610 T12: 0.0389 REMARK 3 T13: -0.1416 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.0052 L22: 3.5865 REMARK 3 L33: 5.4430 L12: 0.0307 REMARK 3 L13: -2.0656 L23: -0.2415 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0323 S13: 0.2326 REMARK 3 S21: -0.4058 S22: 0.1166 S23: 0.4438 REMARK 3 S31: -0.1787 S32: -0.3910 S33: -0.0590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN H AND RESID 1:118 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6910 -3.3129 -27.3918 REMARK 3 T TENSOR REMARK 3 T11: 0.4801 T22: 0.4124 REMARK 3 T33: 0.3066 T12: -0.0634 REMARK 3 T13: -0.0247 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 4.2342 L22: 4.7955 REMARK 3 L33: 3.7843 L12: 2.4690 REMARK 3 L13: 1.4671 L23: 1.6626 REMARK 3 S TENSOR REMARK 3 S11: 0.2711 S12: -0.3023 S13: 0.0751 REMARK 3 S21: 0.5298 S22: -0.3292 S23: -0.1057 REMARK 3 S31: -0.3168 S32: 0.1541 S33: 0.0390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN H AND RESID 119:217 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6777 7.3985 -0.8815 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.5603 REMARK 3 T33: 0.3413 T12: -0.0225 REMARK 3 T13: 0.0202 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 6.6770 L22: 7.5773 REMARK 3 L33: 2.3920 L12: -1.2072 REMARK 3 L13: 1.6044 L23: -1.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.3746 S13: 0.2564 REMARK 3 S21: 0.3424 S22: 0.0384 S23: -0.4507 REMARK 3 S31: -0.0350 S32: 0.4441 S33: -0.0231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN L AND RESID 1:97 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6346 -14.5348 -8.7605 REMARK 3 T TENSOR REMARK 3 T11: 0.6614 T22: 0.3643 REMARK 3 T33: 0.3121 T12: 0.0029 REMARK 3 T13: 0.0017 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 6.7869 L22: 3.5436 REMARK 3 L33: 5.6851 L12: 1.5909 REMARK 3 L13: 0.7669 L23: 0.6223 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: -0.5760 S13: 0.1479 REMARK 3 S21: 0.6417 S22: -0.2418 S23: -0.1066 REMARK 3 S31: -0.0304 S32: -0.1078 S33: 0.1671 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN L AND RESID 98:214 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1690 10.0536 7.2485 REMARK 3 T TENSOR REMARK 3 T11: 0.4038 T22: 0.4797 REMARK 3 T33: 0.3846 T12: 0.0577 REMARK 3 T13: 0.0009 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 2.8860 L22: 6.9494 REMARK 3 L33: 2.8640 L12: 2.5513 REMARK 3 L13: 1.0065 L23: 0.8583 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.3365 S13: 0.3914 REMARK 3 S21: 0.3156 S22: -0.0382 S23: 0.4210 REMARK 3 S31: -0.1942 S32: -0.0570 S33: 0.0213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : APS 22ID REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19490 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% PEG 4000, 0.5% REMARK 280 ISOPROPANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.98750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.51150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.99350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.51150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.98750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.99350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 SER H 1 REMARK 465 CYS H 216 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN G 448 C2 NAG G 510 2.04 REMARK 500 ND2 ASN G 289 C2 NAG G 505 2.13 REMARK 500 ND2 ASN G 276 C2 NAG G 504 2.16 REMARK 500 ND2 ASN G 241 C2 NAG G 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 88 6.60 59.91 REMARK 500 SER G 115 -60.40 -106.60 REMARK 500 ASN G 232 44.65 -103.22 REMARK 500 GLN G 258 -57.56 61.13 REMARK 500 GLU G 268 -110.64 57.79 REMARK 500 PHE G 353 47.28 -140.39 REMARK 500 ASN G 462 -98.12 -102.85 REMARK 500 THR G 463 -20.52 68.74 REMARK 500 SER H 25 -63.12 -127.21 REMARK 500 ARG H 66 -35.37 -131.46 REMARK 500 LEU H 124 72.30 -102.71 REMARK 500 SER H 127 -152.63 -118.58 REMARK 500 THR H 135 113.08 -38.20 REMARK 500 SER L 32 30.32 -78.73 REMARK 500 ALA L 51 -48.13 66.57 REMARK 500 HIS L 68 -87.49 62.77 REMARK 500 PHE L 91 -112.36 53.67 REMARK 500 ASN L 138 79.03 54.41 REMARK 500 GLU L 143 95.38 -65.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SE8 RELATED DB: PDB REMARK 900 RELATED ID: 3SE9 RELATED DB: PDB REMARK 900 RELATED ID: 3NGB RELATED DB: PDB REMARK 900 RELATED ID: 4JPV RELATED DB: PDB REMARK 900 RELATED ID: 4GW4 RELATED DB: PDB DBREF 4JPW G 44 492 PDB 4JPW 4JPW 44 492 DBREF 4JPW H 1 216 PDB 4JPW 4JPW 1 216 DBREF 4JPW L 1 214 PDB 4JPW 4JPW 1 214 SEQRES 1 G 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 G 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 G 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 G 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 G 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 G 353 ILE GLU SEQRES 1 H 225 SER GLN HIS LEU VAL GLN SER GLY THR GLN VAL LYS LYS SEQRES 2 H 225 PRO GLY ALA SER VAL ARG VAL SER CYS GLN ALA SER GLY SEQRES 3 H 225 TYR THR PHE THR ASN TYR ILE LEU HIS TRP TRP ARG GLN SEQRES 4 H 225 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY LEU ILE LYS SEQRES 5 H 225 PRO VAL PHE GLY ALA VAL ASN TYR ALA ARG GLN PHE GLN SEQRES 6 H 225 GLY ARG ILE GLN LEU THR ARG ASP ILE TYR ARG GLU ILE SEQRES 7 H 225 ALA PHE LEU ASP LEU SER GLY LEU ARG SER ASP ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA ARG ASP GLU SER GLY ASP ASP SEQRES 9 H 225 LEU LYS TRP HIS LEU HIS PRO TRP GLY GLN GLY THR GLN SEQRES 10 H 225 VAL ILE VAL SER PRO ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 225 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 225 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 225 PRO LYS SER CYS SEQRES 1 L 210 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 210 SER VAL GLY ASP ARG VAL THR ILE ASN CYS GLN ALA GLY SEQRES 3 L 210 GLN GLY ILE GLY SER SER LEU ASN TRP TYR GLN LYS LYS SEQRES 4 L 210 PRO GLY ARG ALA PRO LYS LEU LEU VAL HIS GLY ALA SER SEQRES 5 L 210 ASN LEU GLN ARG GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 210 GLY PHE HIS THR THR PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 210 GLN PRO ASP ASP VAL ALA THR TYR PHE CYS ALA VAL PHE SEQRES 8 L 210 GLN TRP PHE GLY PRO GLY THR LYS VAL ASP ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU ARG SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS MODRES 4JPW ASN G 295 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 448 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 234 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 241 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 386 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 392 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 334 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 289 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 262 ASN GLYCOSYLATION SITE MODRES 4JPW ASN G 276 ASN GLYCOSYLATION SITE HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HET EPE G 511 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EPE HEPES FORMUL 4 NAG 10(C8 H15 N O6) FORMUL 14 EPE C8 H18 N2 O4 S FORMUL 15 HOH *62(H2 O) HELIX 1 1 GLU G 64 CYS G 74 1 11 HELIX 2 2 ASN G 98 LEU G 116 1 19 HELIX 3 3 GLY G 335 GLU G 351 1 17 HELIX 4 4 ASP G 368 MET G 373 1 6 HELIX 5 5 THR G 387 PHE G 391 5 5 HELIX 6 6 ASN G 392 GLY G 397 1 6 HELIX 7 7 ILE G 475 SER G 481 1 7 HELIX 8 8 THR H 28 TYR H 33 5 5 HELIX 9 9 ARG H 83 THR H 87 5 5 HELIX 10 10 SER H 97 LEU H 100B 5 5 HELIX 11 11 SER H 156 ALA H 158 5 3 HELIX 12 12 PRO H 185 LEU H 189 5 5 HELIX 13 13 LYS H 201 ASN H 204 5 4 HELIX 14 14 GLN L 79 VAL L 83 5 5 HELIX 15 15 SER L 121 GLY L 128 1 8 HELIX 16 16 LYS L 183 HIS L 189 1 7 SHEET 1 A 5 TRP G 45 ASP G 47 0 SHEET 2 A 5 TYR G 486 ILE G 491 -1 O GLN G 490 N LYS G 46 SHEET 3 A 5 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 A 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 A 5 GLU G 83 LEU G 86 -1 N LEU G 86 O VAL G 242 SHEET 1 B 3 VAL G 75 PRO G 76 0 SHEET 2 B 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 B 3 HIS G 216 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 C 2 GLU G 91 ASN G 94 0 SHEET 2 C 2 THR G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 D 4 SER G 199 LYS G 202 0 SHEET 2 D 4 VAL G 120 THR G 123 -1 N LYS G 121 O ILE G 201 SHEET 3 D 4 GLN G 432 MET G 434 -1 O MET G 434 N VAL G 120 SHEET 4 D 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 E 5 LEU G 259 LEU G 261 0 SHEET 2 E 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 E 5 ILE G 284 ARG G 298 -1 N ILE G 284 O LEU G 454 SHEET 4 E 5 ASN G 465 PRO G 470 0 SHEET 5 E 5 THR G 358 PHE G 361 1 N ILE G 360 O PHE G 468 SHEET 1 F 7 ILE G 271 ARG G 273 0 SHEET 2 F 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 F 7 ILE G 443 ARG G 456 -1 O LEU G 454 N ILE G 284 SHEET 4 F 7 LYS G 328 ASN G 334 0 SHEET 5 F 7 THR G 413 ILE G 420 -1 O ILE G 414 N ILE G 333 SHEET 6 F 7 GLU G 381 CYS G 385 -1 N TYR G 384 O LYS G 419 SHEET 7 F 7 HIS G 374 CYS G 378 -1 N CYS G 378 O GLU G 381 SHEET 1 G 4 LEU H 4 GLN H 6 0 SHEET 2 G 4 SER H 17 ALA H 24 -1 O GLN H 23 N VAL H 5 SHEET 3 G 4 ILE H 77 SER H 82A-1 O ALA H 78 N CYS H 22 SHEET 4 G 4 ILE H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 H 6 GLN H 10 LYS H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O ILE H 110 N LYS H 12 SHEET 3 H 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 H 6 LEU H 35 GLN H 39 -1 N TRP H 37 O TYR H 91 SHEET 5 H 6 GLU H 46 LYS H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 H 6 ALA H 56 TYR H 59 -1 O ALA H 56 N LYS H 52 SHEET 1 I 4 GLN H 10 LYS H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O ILE H 110 N LYS H 12 SHEET 3 I 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 I 4 LEU H 100F TRP H 103 -1 O HIS H 101 N ARG H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 VAL H 211 -1 O THR H 205 N HIS H 200 SHEET 1 M 4 MET L 4 SER L 7 0 SHEET 2 M 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 M 4 THR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 M 4 PHE L 62 PHE L 67 -1 N SER L 63 O THR L 74 SHEET 1 N 6 SER L 10 ALA L 13 0 SHEET 2 N 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 N 6 ALA L 84 VAL L 90 -1 N TYR L 86 O THR L 102 SHEET 4 N 6 ASN L 34 LYS L 38 -1 N LYS L 38 O THR L 85 SHEET 5 N 6 LYS L 45 HIS L 49 -1 O VAL L 48 N TRP L 35 SHEET 6 N 6 ASN L 53 LEU L 54 -1 O ASN L 53 N HIS L 49 SHEET 1 O 4 SER L 10 ALA L 13 0 SHEET 2 O 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 O 4 ALA L 84 VAL L 90 -1 N TYR L 86 O THR L 102 SHEET 4 O 4 TRP L 97 PHE L 98 -1 O TRP L 97 N VAL L 90 SHEET 1 P 4 SER L 114 PHE L 118 0 SHEET 2 P 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 P 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 P 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 Q 4 LEU L 154 GLN L 155 0 SHEET 2 Q 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 Q 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 Q 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.03 SSBOND 9 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 10 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 11 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 12 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.44 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG G 510 1555 1555 1.44 CISPEP 1 HIS H 101 PRO H 102 0 -1.57 CISPEP 2 PHE H 146 PRO H 147 0 -1.69 CISPEP 3 GLU H 148 PRO H 149 0 -4.20 CISPEP 4 SER L 7 PRO L 8 0 -2.34 CISPEP 5 TYR L 140 PRO L 141 0 1.75 CRYST1 61.975 65.987 213.023 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004694 0.00000