HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-MAR-13 4JQS TITLE CRYSTAL STRUCTURE OF A PUTATIVE THUA-LIKE PROTEIN (BACUNI_01602) FROM TITLE 2 BACTEROIDES UNIFORMIS ATCC 8492 AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 3 ORGANISM_TAXID: 411479; SOURCE 4 STRAIN: ATCC 8492; SOURCE 5 GENE: ZP_02070184.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TREHALOSE UTILIZATION, PF06283 FAMILY PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4JQS 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4JQS 1 JRNL REVDAT 3 15-NOV-17 4JQS 1 REMARK REVDAT 2 24-DEC-14 4JQS 1 TITLE REVDAT 1 08-MAY-13 4JQS 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACUNI_01602) JRNL TITL 2 FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 35175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1764 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2753 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2106 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2626 REMARK 3 BIN R VALUE (WORKING SET) : 0.2088 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.73670 REMARK 3 B22 (A**2) : -1.46780 REMARK 3 B33 (A**2) : -1.26890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.266 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6258 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8520 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2728 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 170 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 887 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6258 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 745 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7337 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|23 - 267 } REMARK 3 ORIGIN FOR THE GROUP (A): 43.3835 69.9774 90.2465 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: -0.1054 REMARK 3 T33: -0.0840 T12: -0.0100 REMARK 3 T13: -0.0292 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 1.4592 L22: 1.0804 REMARK 3 L33: 1.2651 L12: 0.1105 REMARK 3 L13: -0.1676 L23: -0.5117 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.1475 S13: -0.2312 REMARK 3 S21: -0.1685 S22: 0.0914 S23: -0.0678 REMARK 3 S31: 0.3017 S32: 0.0477 S33: -0.0806 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|23 - 267 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.1586 105.2220 89.3735 REMARK 3 T TENSOR REMARK 3 T11: -0.0788 T22: -0.0478 REMARK 3 T33: -0.0352 T12: -0.0603 REMARK 3 T13: 0.0268 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.5621 L22: 1.0118 REMARK 3 L33: 0.9502 L12: -0.1118 REMARK 3 L13: 0.5970 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.2327 S13: 0.2809 REMARK 3 S21: -0.0283 S22: 0.0401 S23: -0.1711 REMARK 3 S31: -0.0992 S32: 0.1930 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|23 - 267 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.2317 96.9931 92.4199 REMARK 3 T TENSOR REMARK 3 T11: -0.0864 T22: -0.0505 REMARK 3 T33: -0.0146 T12: -0.0068 REMARK 3 T13: -0.0387 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 1.1939 L22: 0.8366 REMARK 3 L33: 1.1787 L12: 0.0297 REMARK 3 L13: -0.2133 L23: 0.4329 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0891 S13: 0.1747 REMARK 3 S21: -0.0488 S22: 0.0587 S23: 0.2227 REMARK 3 S31: -0.0577 S32: -0.1460 S33: -0.0567 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD REMARK 3 PHASES. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). 5. POLYETHYLENE GLYCOL REMARK 3 FRAGMENTS (PG4,P6G) FROM THE CRYSTALLIZATION SOLUTION WERE REMARK 3 MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 4JQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97935,0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.834 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 9.5, 40% POLYETHYLENE REMARK 280 GLYCOL 600, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.08550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.08550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.16300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.28200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.16300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.28200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.08550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.16300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.28200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.08550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.16300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.28200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 478 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 19 REMARK 465 VAL A 20 REMARK 465 PRO A 21 REMARK 465 GLU A 22 REMARK 465 GLY B 0 REMARK 465 GLN B 19 REMARK 465 VAL B 20 REMARK 465 PRO B 21 REMARK 465 GLU B 22 REMARK 465 GLY C 0 REMARK 465 GLN C 19 REMARK 465 VAL C 20 REMARK 465 PRO C 21 REMARK 465 GLU C 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS B 35 CE NZ REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 GLU C 45 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 79 75.58 -119.65 REMARK 500 ASN A 94 1.53 -154.11 REMARK 500 HIS A 120 -108.50 38.09 REMARK 500 ASN B 94 2.38 -153.47 REMARK 500 HIS B 120 -107.91 37.34 REMARK 500 TYR C 79 74.63 -119.05 REMARK 500 ASN C 94 2.06 -153.64 REMARK 500 HIS C 120 -108.70 38.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418017 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 19-267) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4JQS A 19 267 UNP A7V213 A7V213_BACUN 19 267 DBREF 4JQS B 19 267 UNP A7V213 A7V213_BACUN 19 267 DBREF 4JQS C 19 267 UNP A7V213 A7V213_BACUN 19 267 SEQADV 4JQS GLY A 0 UNP A7V213 EXPRESSION TAG SEQADV 4JQS GLY B 0 UNP A7V213 EXPRESSION TAG SEQADV 4JQS GLY C 0 UNP A7V213 EXPRESSION TAG SEQRES 1 A 250 GLY GLN VAL PRO GLU GLY TYR PRO ALA ASN TYR ALA LYS SEQRES 2 A 250 ALA PRO ARG PHE LYS ALA LEU ILE TYR TYR THR GLN HIS SEQRES 3 A 250 ALA GLU GLU ALA HIS VAL GLN PHE ALA GLU GLN ALA THR SEQRES 4 A 250 THR PHE PHE LYS LYS LEU ASN TYR GLY ASP GLY PHE VAL SEQRES 5 A 250 LEU ASP ILE THR THR ASP PHE SER LYS TYR PRO TYR GLU SEQRES 6 A 250 LYS LEU LYS GLU TYR ASN VAL ILE ILE MSE LEU ASN THR SEQRES 7 A 250 SER PRO ASN THR LYS ALA GLU ARG ASP ALA PHE GLU GLN SEQRES 8 A 250 TYR MSE GLU ASN GLY GLY GLY TRP VAL GLY PHE HIS ALA SEQRES 9 A 250 ALA ALA TYR ASN ASP LYS ASN THR HIS TRP PRO TRP PHE SEQRES 10 A 250 VAL LYS PHE LEU GLY GLY GLY VAL PHE TYR CYS ASN ASN SEQRES 11 A 250 TRP PRO PRO GLN PRO VAL LEU VAL GLU VAL ASP ASN GLU SEQRES 12 A 250 GLU HIS PRO VAL THR LYS ASN LEU PRO ALA SER PHE VAL SEQRES 13 A 250 ALA PRO ALA SER GLU TRP TYR GLN TRP THR PRO SER PRO SEQRES 14 A 250 ARG GLN ASN LYS ASP VAL GLU VAL LEU LEU SER LEU SER SEQRES 15 A 250 PRO LYS ASN TYR PRO LEU GLY ILE LYS ASP VAL VAL ASN SEQRES 16 A 250 PHE GLY ASP PHE PRO ILE VAL TRP SER ASN LYS ASN TYR SEQRES 17 A 250 ARG MSE ILE TYR LEU ASN MSE GLY HIS GLY ASP GLU GLU SEQRES 18 A 250 PHE ILE ASP GLY THR GLN ASN LEU LEU LEU VAL ASN ALA SEQRES 19 A 250 PHE ARG TRP VAL VAL SER LYS ASP LYS SER GLY ASN PRO SEQRES 20 A 250 PHE LEU LYS SEQRES 1 B 250 GLY GLN VAL PRO GLU GLY TYR PRO ALA ASN TYR ALA LYS SEQRES 2 B 250 ALA PRO ARG PHE LYS ALA LEU ILE TYR TYR THR GLN HIS SEQRES 3 B 250 ALA GLU GLU ALA HIS VAL GLN PHE ALA GLU GLN ALA THR SEQRES 4 B 250 THR PHE PHE LYS LYS LEU ASN TYR GLY ASP GLY PHE VAL SEQRES 5 B 250 LEU ASP ILE THR THR ASP PHE SER LYS TYR PRO TYR GLU SEQRES 6 B 250 LYS LEU LYS GLU TYR ASN VAL ILE ILE MSE LEU ASN THR SEQRES 7 B 250 SER PRO ASN THR LYS ALA GLU ARG ASP ALA PHE GLU GLN SEQRES 8 B 250 TYR MSE GLU ASN GLY GLY GLY TRP VAL GLY PHE HIS ALA SEQRES 9 B 250 ALA ALA TYR ASN ASP LYS ASN THR HIS TRP PRO TRP PHE SEQRES 10 B 250 VAL LYS PHE LEU GLY GLY GLY VAL PHE TYR CYS ASN ASN SEQRES 11 B 250 TRP PRO PRO GLN PRO VAL LEU VAL GLU VAL ASP ASN GLU SEQRES 12 B 250 GLU HIS PRO VAL THR LYS ASN LEU PRO ALA SER PHE VAL SEQRES 13 B 250 ALA PRO ALA SER GLU TRP TYR GLN TRP THR PRO SER PRO SEQRES 14 B 250 ARG GLN ASN LYS ASP VAL GLU VAL LEU LEU SER LEU SER SEQRES 15 B 250 PRO LYS ASN TYR PRO LEU GLY ILE LYS ASP VAL VAL ASN SEQRES 16 B 250 PHE GLY ASP PHE PRO ILE VAL TRP SER ASN LYS ASN TYR SEQRES 17 B 250 ARG MSE ILE TYR LEU ASN MSE GLY HIS GLY ASP GLU GLU SEQRES 18 B 250 PHE ILE ASP GLY THR GLN ASN LEU LEU LEU VAL ASN ALA SEQRES 19 B 250 PHE ARG TRP VAL VAL SER LYS ASP LYS SER GLY ASN PRO SEQRES 20 B 250 PHE LEU LYS SEQRES 1 C 250 GLY GLN VAL PRO GLU GLY TYR PRO ALA ASN TYR ALA LYS SEQRES 2 C 250 ALA PRO ARG PHE LYS ALA LEU ILE TYR TYR THR GLN HIS SEQRES 3 C 250 ALA GLU GLU ALA HIS VAL GLN PHE ALA GLU GLN ALA THR SEQRES 4 C 250 THR PHE PHE LYS LYS LEU ASN TYR GLY ASP GLY PHE VAL SEQRES 5 C 250 LEU ASP ILE THR THR ASP PHE SER LYS TYR PRO TYR GLU SEQRES 6 C 250 LYS LEU LYS GLU TYR ASN VAL ILE ILE MSE LEU ASN THR SEQRES 7 C 250 SER PRO ASN THR LYS ALA GLU ARG ASP ALA PHE GLU GLN SEQRES 8 C 250 TYR MSE GLU ASN GLY GLY GLY TRP VAL GLY PHE HIS ALA SEQRES 9 C 250 ALA ALA TYR ASN ASP LYS ASN THR HIS TRP PRO TRP PHE SEQRES 10 C 250 VAL LYS PHE LEU GLY GLY GLY VAL PHE TYR CYS ASN ASN SEQRES 11 C 250 TRP PRO PRO GLN PRO VAL LEU VAL GLU VAL ASP ASN GLU SEQRES 12 C 250 GLU HIS PRO VAL THR LYS ASN LEU PRO ALA SER PHE VAL SEQRES 13 C 250 ALA PRO ALA SER GLU TRP TYR GLN TRP THR PRO SER PRO SEQRES 14 C 250 ARG GLN ASN LYS ASP VAL GLU VAL LEU LEU SER LEU SER SEQRES 15 C 250 PRO LYS ASN TYR PRO LEU GLY ILE LYS ASP VAL VAL ASN SEQRES 16 C 250 PHE GLY ASP PHE PRO ILE VAL TRP SER ASN LYS ASN TYR SEQRES 17 C 250 ARG MSE ILE TYR LEU ASN MSE GLY HIS GLY ASP GLU GLU SEQRES 18 C 250 PHE ILE ASP GLY THR GLN ASN LEU LEU LEU VAL ASN ALA SEQRES 19 C 250 PHE ARG TRP VAL VAL SER LYS ASP LYS SER GLY ASN PRO SEQRES 20 C 250 PHE LEU LYS MODRES 4JQS MSE A 92 MET SELENOMETHIONINE MODRES 4JQS MSE A 110 MET SELENOMETHIONINE MODRES 4JQS MSE A 227 MET SELENOMETHIONINE MODRES 4JQS MSE A 232 MET SELENOMETHIONINE MODRES 4JQS MSE B 92 MET SELENOMETHIONINE MODRES 4JQS MSE B 110 MET SELENOMETHIONINE MODRES 4JQS MSE B 227 MET SELENOMETHIONINE MODRES 4JQS MSE B 232 MET SELENOMETHIONINE MODRES 4JQS MSE C 92 MET SELENOMETHIONINE MODRES 4JQS MSE C 110 MET SELENOMETHIONINE MODRES 4JQS MSE C 227 MET SELENOMETHIONINE MODRES 4JQS MSE C 232 MET SELENOMETHIONINE HET MSE A 92 8 HET MSE A 110 8 HET MSE A 227 8 HET MSE A 232 8 HET MSE B 92 8 HET MSE B 110 8 HET MSE B 227 8 HET MSE B 232 8 HET MSE C 92 8 HET MSE C 110 8 HET MSE C 227 8 HET MSE C 232 8 HET PG4 A 301 13 HET P6G B 301 19 HET PG4 C 301 13 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 PG4 2(C8 H18 O5) FORMUL 5 P6G C12 H26 O7 FORMUL 7 HOH *258(H2 O) HELIX 1 1 GLU A 45 ASN A 63 1 19 HELIX 2 2 ASP A 75 TYR A 79 5 5 HELIX 3 3 PRO A 80 LYS A 85 1 6 HELIX 4 4 THR A 99 ASN A 112 1 14 HELIX 5 5 ALA A 121 TYR A 124 5 4 HELIX 6 6 TRP A 131 GLY A 139 1 9 HELIX 7 7 SER A 185 ASN A 189 5 5 HELIX 8 8 PRO A 200 TYR A 203 5 4 HELIX 9 9 ASP A 241 LYS A 258 1 18 HELIX 10 10 ASN A 263 LYS A 267 5 5 HELIX 11 11 GLU B 45 ASN B 63 1 19 HELIX 12 12 ASP B 75 TYR B 79 5 5 HELIX 13 13 PRO B 80 LYS B 85 1 6 HELIX 14 14 THR B 99 ASN B 112 1 14 HELIX 15 15 ALA B 121 TYR B 124 5 4 HELIX 16 16 TRP B 131 GLY B 139 1 9 HELIX 17 17 SER B 185 ASN B 189 5 5 HELIX 18 18 PRO B 200 TYR B 203 5 4 HELIX 19 19 ASP B 241 LYS B 258 1 18 HELIX 20 20 ASN B 263 LYS B 267 5 5 HELIX 21 21 GLU C 45 ASN C 63 1 19 HELIX 22 22 ASP C 75 TYR C 79 5 5 HELIX 23 23 PRO C 80 LYS C 85 1 6 HELIX 24 24 THR C 99 ASN C 112 1 14 HELIX 25 25 ALA C 121 TYR C 124 5 4 HELIX 26 26 TRP C 131 GLY C 139 1 9 HELIX 27 27 SER C 185 ASN C 189 5 5 HELIX 28 28 PRO C 200 TYR C 203 5 4 HELIX 29 29 ASP C 241 LYS C 258 1 18 HELIX 30 30 ASN C 263 LYS C 267 5 5 SHEET 1 A 2 ALA A 26 ASN A 27 0 SHEET 2 A 2 VAL C 210 VAL C 211 -1 O VAL C 210 N ASN A 27 SHEET 1 B 9 VAL A 69 THR A 73 0 SHEET 2 B 9 LYS A 35 TYR A 39 1 N ILE A 38 O ASP A 71 SHEET 3 B 9 VAL A 89 MSE A 92 1 O ILE A 91 N LEU A 37 SHEET 4 B 9 GLY A 115 PHE A 119 1 O VAL A 117 N MSE A 92 SHEET 5 B 9 ARG A 226 LEU A 230 1 O LEU A 230 N GLY A 118 SHEET 6 B 9 PRO A 217 ASN A 222 -1 N TRP A 220 O TYR A 229 SHEET 7 B 9 VAL A 192 LEU A 198 -1 N LEU A 195 O VAL A 219 SHEET 8 B 9 GLN A 151 VAL A 157 -1 N GLU A 156 O SER A 197 SHEET 9 B 9 SER A 171 SER A 177 -1 O PHE A 172 N VAL A 155 SHEET 1 C 2 VAL A 142 ASN A 146 0 SHEET 2 C 2 TYR A 180 THR A 183 -1 O GLN A 181 N CYS A 145 SHEET 1 D 2 VAL A 210 VAL A 211 0 SHEET 2 D 2 ALA B 26 ASN B 27 -1 O ASN B 27 N VAL A 210 SHEET 1 E 9 VAL B 69 THR B 73 0 SHEET 2 E 9 LYS B 35 TYR B 39 1 N ILE B 38 O ASP B 71 SHEET 3 E 9 VAL B 89 MSE B 92 1 O ILE B 91 N LEU B 37 SHEET 4 E 9 GLY B 115 PHE B 119 1 O VAL B 117 N MSE B 92 SHEET 5 E 9 ARG B 226 LEU B 230 1 O ILE B 228 N GLY B 118 SHEET 6 E 9 PRO B 217 ASN B 222 -1 N TRP B 220 O TYR B 229 SHEET 7 E 9 VAL B 192 LEU B 198 -1 N LEU B 195 O VAL B 219 SHEET 8 E 9 GLN B 151 VAL B 157 -1 N GLU B 156 O SER B 197 SHEET 9 E 9 SER B 171 SER B 177 -1 O PHE B 172 N VAL B 155 SHEET 1 F 2 VAL B 142 ASN B 146 0 SHEET 2 F 2 TYR B 180 THR B 183 -1 O THR B 183 N VAL B 142 SHEET 1 G 2 VAL B 210 VAL B 211 0 SHEET 2 G 2 ALA C 26 ASN C 27 -1 O ASN C 27 N VAL B 210 SHEET 1 H 9 VAL C 69 THR C 73 0 SHEET 2 H 9 LYS C 35 TYR C 39 1 N ILE C 38 O ASP C 71 SHEET 3 H 9 VAL C 89 MSE C 92 1 O ILE C 91 N LEU C 37 SHEET 4 H 9 GLY C 115 PHE C 119 1 O VAL C 117 N MSE C 92 SHEET 5 H 9 ARG C 226 LEU C 230 1 O LEU C 230 N GLY C 118 SHEET 6 H 9 PRO C 217 ASN C 222 -1 N TRP C 220 O TYR C 229 SHEET 7 H 9 VAL C 192 LEU C 198 -1 N LEU C 195 O VAL C 219 SHEET 8 H 9 GLN C 151 VAL C 157 -1 N GLU C 156 O SER C 197 SHEET 9 H 9 SER C 171 SER C 177 -1 O PHE C 172 N VAL C 155 SHEET 1 I 2 VAL C 142 ASN C 146 0 SHEET 2 I 2 TYR C 180 THR C 183 -1 O GLN C 181 N CYS C 145 LINK C ILE A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N LEU A 93 1555 1555 1.33 LINK C TYR A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N GLU A 111 1555 1555 1.34 LINK C ARG A 226 N MSE A 227 1555 1555 1.34 LINK C MSE A 227 N ILE A 228 1555 1555 1.33 LINK C ASN A 231 N MSE A 232 1555 1555 1.34 LINK C MSE A 232 N GLY A 233 1555 1555 1.33 LINK C ILE B 91 N MSE B 92 1555 1555 1.35 LINK C MSE B 92 N LEU B 93 1555 1555 1.34 LINK C TYR B 109 N MSE B 110 1555 1555 1.34 LINK C MSE B 110 N GLU B 111 1555 1555 1.34 LINK C ARG B 226 N MSE B 227 1555 1555 1.34 LINK C MSE B 227 N ILE B 228 1555 1555 1.34 LINK C ASN B 231 N MSE B 232 1555 1555 1.34 LINK C MSE B 232 N GLY B 233 1555 1555 1.33 LINK C ILE C 91 N MSE C 92 1555 1555 1.35 LINK C MSE C 92 N LEU C 93 1555 1555 1.32 LINK C TYR C 109 N MSE C 110 1555 1555 1.36 LINK C MSE C 110 N GLU C 111 1555 1555 1.34 LINK C ARG C 226 N MSE C 227 1555 1555 1.33 LINK C MSE C 227 N ILE C 228 1555 1555 1.31 LINK C ASN C 231 N MSE C 232 1555 1555 1.35 LINK C MSE C 232 N GLY C 233 1555 1555 1.33 CISPEP 1 TRP A 148 PRO A 149 0 3.38 CISPEP 2 THR A 183 PRO A 184 0 -3.76 CISPEP 3 TYR A 203 PRO A 204 0 -6.41 CISPEP 4 TRP B 148 PRO B 149 0 4.69 CISPEP 5 THR B 183 PRO B 184 0 -4.50 CISPEP 6 TYR B 203 PRO B 204 0 -4.65 CISPEP 7 TRP C 148 PRO C 149 0 2.97 CISPEP 8 THR C 183 PRO C 184 0 -6.93 CISPEP 9 TYR C 203 PRO C 204 0 -3.34 SITE 1 AC1 5 LEU A 154 GLU A 156 LYS A 201 GLU B 160 SITE 2 AC1 5 LYS B 166 SITE 1 AC2 7 LEU B 154 GLU B 156 SER B 171 LYS B 201 SITE 2 AC2 7 GLU C 160 LYS C 166 LEU C 168 SITE 1 AC3 6 GLU A 160 LYS A 166 LEU A 168 LEU C 154 SITE 2 AC3 6 GLU C 156 LYS C 201 CRYST1 80.326 136.564 144.171 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006936 0.00000