HEADER APOPTOSIS, HYDROLASE/HYDROLASE INHIBITOR20-MAR-13 4JR0 TITLE HUMAN PROCASPASE-3 BOUND TO AC-DEVD-CMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROCASPASE-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEASE DOMAIN (UNP RESIDUES 34-277); COMPND 5 SYNONYM: CASP-3, APOPAIN, CYSTEINE PROTEASE CPP32, CPP-32, PROTEIN COMPND 6 YAMA, SREBP CLEAVAGE ACTIVITY 1, SCA-1, CASPASE-3; COMPND 7 EC: 3.4.22.56; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: AC-DEVD-CMK; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP3, CPP32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ADDGENE PLASMID 29653; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEASE, PROENZYME, PROTEIN-PEPTIDE COMPLEX, IRREVERSIBLE INHIBITOR, KEYWDS 2 ACTIVITY BASED PROBE, CASPASE, APOPTOSIS, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.D.THOMSEN,J.A.WELLS REVDAT 5 20-SEP-23 4JR0 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4JR0 1 REMARK REVDAT 3 05-JUN-13 4JR0 1 JRNL REVDAT 2 22-MAY-13 4JR0 1 JRNL REVDAT 1 08-MAY-13 4JR0 0 JRNL AUTH N.D.THOMSEN,J.T.KOERBER,J.A.WELLS JRNL TITL STRUCTURAL SNAPSHOTS REVEAL DISTINCT MECHANISMS OF JRNL TITL 2 PROCASPASE-3 AND -7 ACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8477 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23650375 JRNL DOI 10.1073/PNAS.1306759110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 51020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3380 - 4.7054 1.00 2885 160 0.1791 0.1964 REMARK 3 2 4.7054 - 3.7353 0.99 2739 171 0.1307 0.1367 REMARK 3 3 3.7353 - 3.2632 1.00 2753 116 0.1441 0.1911 REMARK 3 4 3.2632 - 2.9649 1.00 2759 124 0.1659 0.2221 REMARK 3 5 2.9649 - 2.7524 1.00 2674 148 0.1650 0.1803 REMARK 3 6 2.7524 - 2.5901 1.00 2728 147 0.1565 0.2087 REMARK 3 7 2.5901 - 2.4604 1.00 2674 147 0.1617 0.2220 REMARK 3 8 2.4604 - 2.3533 1.00 2681 140 0.1599 0.1788 REMARK 3 9 2.3533 - 2.2627 1.00 2684 142 0.1564 0.2149 REMARK 3 10 2.2627 - 2.1847 1.00 2668 152 0.1511 0.1835 REMARK 3 11 2.1847 - 2.1164 1.00 2652 166 0.1624 0.1904 REMARK 3 12 2.1164 - 2.0559 1.00 2679 130 0.1667 0.2159 REMARK 3 13 2.0559 - 2.0017 1.00 2656 150 0.1679 0.2171 REMARK 3 14 2.0017 - 1.9529 1.00 2660 133 0.1903 0.2305 REMARK 3 15 1.9529 - 1.9085 0.99 2664 152 0.1974 0.2209 REMARK 3 16 1.9085 - 1.8679 0.99 2655 130 0.2092 0.2488 REMARK 3 17 1.8679 - 1.8305 0.99 2622 146 0.2202 0.2729 REMARK 3 18 1.8305 - 1.7960 0.97 2599 134 0.2355 0.2440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4051 REMARK 3 ANGLE : 1.245 5502 REMARK 3 CHIRALITY : 0.095 587 REMARK 3 PLANARITY : 0.005 706 REMARK 3 DIHEDRAL : 12.659 1587 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 34:187 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3781 3.4048 23.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.0902 REMARK 3 T33: 0.1275 T12: -0.0091 REMARK 3 T13: -0.0155 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.4844 L22: 2.3494 REMARK 3 L33: 1.7800 L12: -0.5026 REMARK 3 L13: -0.0268 L23: 0.6889 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.0672 S13: 0.1202 REMARK 3 S21: -0.0245 S22: 0.0008 S23: -0.2811 REMARK 3 S31: -0.0806 S32: 0.1501 S33: 0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 188:247 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7787 -2.8962 22.5654 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0923 REMARK 3 T33: 0.0824 T12: -0.0083 REMARK 3 T13: -0.0044 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.6320 L22: 1.4435 REMARK 3 L33: 1.8192 L12: 0.0423 REMARK 3 L13: 0.1210 L23: 0.5499 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.0481 S13: 0.0366 REMARK 3 S21: 0.0739 S22: -0.0508 S23: 0.1175 REMARK 3 S31: 0.1164 S32: -0.1586 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 248:277 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3803 0.0780 20.6291 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.1146 REMARK 3 T33: 0.0919 T12: -0.0060 REMARK 3 T13: 0.0099 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.5021 L22: 0.5085 REMARK 3 L33: 1.4625 L12: 0.3198 REMARK 3 L13: -0.2463 L23: -0.0588 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.0614 S13: -0.0084 REMARK 3 S21: 0.1504 S22: -0.0203 S23: 0.0201 REMARK 3 S31: 0.0316 S32: -0.0773 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 34:143 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2091 4.1040 -3.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1503 REMARK 3 T33: 0.1431 T12: 0.0488 REMARK 3 T13: -0.0198 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.0305 L22: 1.4229 REMARK 3 L33: 1.8457 L12: 0.0869 REMARK 3 L13: -0.0833 L23: -0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: 0.1253 S13: 0.2805 REMARK 3 S21: -0.1073 S22: -0.0132 S23: 0.2201 REMARK 3 S31: -0.1739 S32: -0.2608 S33: 0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 144:228 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1981 1.3685 1.0694 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1099 REMARK 3 T33: 0.0964 T12: 0.0253 REMARK 3 T13: -0.0001 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.9232 L22: 1.5089 REMARK 3 L33: 1.6961 L12: 0.7583 REMARK 3 L13: -0.2133 L23: -0.7368 REMARK 3 S TENSOR REMARK 3 S11: 0.1509 S12: 0.0240 S13: 0.2528 REMARK 3 S21: 0.0291 S22: -0.0169 S23: 0.0362 REMARK 3 S31: -0.1522 S32: -0.0985 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 229:277 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7753 -2.8729 0.9984 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.1152 REMARK 3 T33: 0.0980 T12: 0.0150 REMARK 3 T13: 0.0039 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.4611 L22: 0.4262 REMARK 3 L33: 1.6220 L12: -0.3077 REMARK 3 L13: -0.3934 L23: -0.1685 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.0039 S13: -0.0220 REMARK 3 S21: -0.1657 S22: -0.0438 S23: -0.0289 REMARK 3 S31: 0.1228 S32: 0.0758 S33: -0.0026 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -6.1603 9.0486 32.3938 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.2079 REMARK 3 T33: 0.1779 T12: 0.0391 REMARK 3 T13: 0.0718 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0416 L22: 0.0483 REMARK 3 L33: 0.1220 L12: -0.0470 REMARK 3 L13: 0.0254 L23: -0.0148 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.4195 S13: -0.1615 REMARK 3 S21: 0.3506 S22: 0.0894 S23: 0.2481 REMARK 3 S31: -0.0058 S32: -0.1255 S33: 0.0022 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 6.2432 9.6796 -10.6323 REMARK 3 T TENSOR REMARK 3 T11: 0.2304 T22: 0.2384 REMARK 3 T33: 0.1832 T12: -0.0100 REMARK 3 T13: 0.1066 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.3316 L22: 0.2953 REMARK 3 L33: 0.0165 L12: -0.2377 REMARK 3 L13: 0.0495 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.3055 S13: -0.1418 REMARK 3 S21: -0.4448 S22: 0.0892 S23: -0.1022 REMARK 3 S31: -0.0135 S32: 0.0590 S33: 0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 2DKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS, PH 8.0, 10 MM DTT, 50 MM REMARK 280 SODIUM CHLORIDE, 10% PEG3350, 250 MM CALCIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.99400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.32050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.37550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.32050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.99400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.37550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE AC-ASP-GLU-VAL-AKZ-CMK IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: AC-ASP-GLU-VAL-AKZ-CMK REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 GLU A 167 REMARK 465 LEU A 168 REMARK 465 ASP A 169 REMARK 465 CYS A 170 REMARK 465 GLY A 171 REMARK 465 ILE A 172 REMARK 465 GLU A 173 REMARK 465 THR A 174 REMARK 465 ALA A 175 REMARK 465 SER A 176 REMARK 465 GLY A 177 REMARK 465 VAL A 178 REMARK 465 ASP A 179 REMARK 465 ASP A 180 REMARK 465 ASP A 181 REMARK 465 MET A 182 REMARK 465 ALA A 183 REMARK 465 CYS A 184 REMARK 465 HIS A 185 REMARK 465 SER B 31 REMARK 465 GLU B 167 REMARK 465 LEU B 168 REMARK 465 ASP B 169 REMARK 465 CYS B 170 REMARK 465 GLY B 171 REMARK 465 ILE B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 ALA B 175 REMARK 465 SER B 176 REMARK 465 GLY B 177 REMARK 465 VAL B 178 REMARK 465 ASP B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 181 REMARK 465 MET B 182 REMARK 465 ALA B 183 REMARK 465 CYS B 184 REMARK 465 HIS B 185 REMARK 465 LYS B 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 120 -177.87 -170.07 REMARK 500 LYS A 229 -12.88 -143.30 REMARK 500 PHE A 275 39.70 -85.20 REMARK 500 SER B 120 -179.24 -171.13 REMARK 500 LYS B 229 -59.85 -129.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF AC-DEVD-CMK REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF AC-DEVD-CMK REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JQY RELATED DB: PDB REMARK 900 RELATED ID: 4JQZ RELATED DB: PDB REMARK 900 RELATED ID: 4JR1 RELATED DB: PDB REMARK 900 RELATED ID: 4JR2 RELATED DB: PDB DBREF 4JR0 A 34 277 UNP P42574 CASP3_HUMAN 34 277 DBREF 4JR0 B 34 277 UNP P42574 CASP3_HUMAN 34 277 DBREF 4JR0 C 1 6 PDB 4JR0 4JR0 1 6 DBREF 4JR0 D 1 6 PDB 4JR0 4JR0 1 6 SEQADV 4JR0 SER A 31 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ASN A 32 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ALA A 33 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ALA A 175 UNP P42574 ASP 175 ENGINEERED MUTATION SEQADV 4JR0 SER B 31 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ASN B 32 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ALA B 33 UNP P42574 EXPRESSION TAG SEQADV 4JR0 ALA B 175 UNP P42574 ASP 175 ENGINEERED MUTATION SEQRES 1 A 247 SER ASN ALA ASP ASN SER TYR LYS MET ASP TYR PRO GLU SEQRES 2 A 247 MET GLY LEU CYS ILE ILE ILE ASN ASN LYS ASN PHE HIS SEQRES 3 A 247 LYS SER THR GLY MET THR SER ARG SER GLY THR ASP VAL SEQRES 4 A 247 ASP ALA ALA ASN LEU ARG GLU THR PHE ARG ASN LEU LYS SEQRES 5 A 247 TYR GLU VAL ARG ASN LYS ASN ASP LEU THR ARG GLU GLU SEQRES 6 A 247 ILE VAL GLU LEU MET ARG ASP VAL SER LYS GLU ASP HIS SEQRES 7 A 247 SER LYS ARG SER SER PHE VAL CYS VAL LEU LEU SER HIS SEQRES 8 A 247 GLY GLU GLU GLY ILE ILE PHE GLY THR ASN GLY PRO VAL SEQRES 9 A 247 ASP LEU LYS LYS ILE THR ASN PHE PHE ARG GLY ASP ARG SEQRES 10 A 247 CYS ARG SER LEU THR GLY LYS PRO LYS LEU PHE ILE ILE SEQRES 11 A 247 GLN ALA CYS ARG GLY THR GLU LEU ASP CYS GLY ILE GLU SEQRES 12 A 247 THR ALA SER GLY VAL ASP ASP ASP MET ALA CYS HIS LYS SEQRES 13 A 247 ILE PRO VAL GLU ALA ASP PHE LEU TYR ALA TYR SER THR SEQRES 14 A 247 ALA PRO GLY TYR TYR SER TRP ARG ASN SER LYS ASP GLY SEQRES 15 A 247 SER TRP PHE ILE GLN SER LEU CYS ALA MET LEU LYS GLN SEQRES 16 A 247 TYR ALA ASP LYS LEU GLU PHE MET HIS ILE LEU THR ARG SEQRES 17 A 247 VAL ASN ARG LYS VAL ALA THR GLU PHE GLU SER PHE SER SEQRES 18 A 247 PHE ASP ALA THR PHE HIS ALA LYS LYS GLN ILE PRO CYS SEQRES 19 A 247 ILE VAL SER MET LEU THR LYS GLU LEU TYR PHE TYR HIS SEQRES 1 B 247 SER ASN ALA ASP ASN SER TYR LYS MET ASP TYR PRO GLU SEQRES 2 B 247 MET GLY LEU CYS ILE ILE ILE ASN ASN LYS ASN PHE HIS SEQRES 3 B 247 LYS SER THR GLY MET THR SER ARG SER GLY THR ASP VAL SEQRES 4 B 247 ASP ALA ALA ASN LEU ARG GLU THR PHE ARG ASN LEU LYS SEQRES 5 B 247 TYR GLU VAL ARG ASN LYS ASN ASP LEU THR ARG GLU GLU SEQRES 6 B 247 ILE VAL GLU LEU MET ARG ASP VAL SER LYS GLU ASP HIS SEQRES 7 B 247 SER LYS ARG SER SER PHE VAL CYS VAL LEU LEU SER HIS SEQRES 8 B 247 GLY GLU GLU GLY ILE ILE PHE GLY THR ASN GLY PRO VAL SEQRES 9 B 247 ASP LEU LYS LYS ILE THR ASN PHE PHE ARG GLY ASP ARG SEQRES 10 B 247 CYS ARG SER LEU THR GLY LYS PRO LYS LEU PHE ILE ILE SEQRES 11 B 247 GLN ALA CYS ARG GLY THR GLU LEU ASP CYS GLY ILE GLU SEQRES 12 B 247 THR ALA SER GLY VAL ASP ASP ASP MET ALA CYS HIS LYS SEQRES 13 B 247 ILE PRO VAL GLU ALA ASP PHE LEU TYR ALA TYR SER THR SEQRES 14 B 247 ALA PRO GLY TYR TYR SER TRP ARG ASN SER LYS ASP GLY SEQRES 15 B 247 SER TRP PHE ILE GLN SER LEU CYS ALA MET LEU LYS GLN SEQRES 16 B 247 TYR ALA ASP LYS LEU GLU PHE MET HIS ILE LEU THR ARG SEQRES 17 B 247 VAL ASN ARG LYS VAL ALA THR GLU PHE GLU SER PHE SER SEQRES 18 B 247 PHE ASP ALA THR PHE HIS ALA LYS LYS GLN ILE PRO CYS SEQRES 19 B 247 ILE VAL SER MET LEU THR LYS GLU LEU TYR PHE TYR HIS SEQRES 1 C 6 ACE ASP GLU VAL AKZ 0QE SEQRES 1 D 6 ACE ASP GLU VAL AKZ 0QE MODRES 4JR0 AKZ C 5 ASP (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID MODRES 4JR0 AKZ D 5 ASP (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID HET ACE C 1 3 HET AKZ C 5 8 HET 0QE C 6 1 HET ACE D 1 3 HET AKZ D 5 8 HET 0QE D 6 1 HET CL A 301 1 HET CL B 301 1 HETNAM ACE ACETYL GROUP HETNAM AKZ (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID HETNAM 0QE CHLOROMETHANE HETNAM CL CHLORIDE ION HETSYN 0QE CHLORO METHYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 AKZ 2(C4 H9 N O4) FORMUL 3 0QE 2(C H3 CL) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *423(H2 O) HELIX 1 1 HIS A 56 GLY A 60 5 5 HELIX 2 2 GLY A 66 LEU A 81 1 16 HELIX 3 3 THR A 92 LYS A 105 1 14 HELIX 4 4 LEU A 136 PHE A 142 1 7 HELIX 5 5 CYS A 148 THR A 152 5 5 HELIX 6 6 TRP A 214 ALA A 227 1 14 HELIX 7 7 GLU A 231 PHE A 247 1 17 HELIX 8 8 ASP A 253 HIS A 257 5 5 HELIX 9 9 HIS B 56 GLY B 60 5 5 HELIX 10 10 GLY B 66 LEU B 81 1 16 HELIX 11 11 THR B 92 GLU B 106 1 15 HELIX 12 12 LEU B 136 ASN B 141 1 6 HELIX 13 13 PHE B 142 ARG B 144 5 3 HELIX 14 14 CYS B 148 THR B 152 5 5 HELIX 15 15 TRP B 214 ALA B 227 1 14 HELIX 16 16 GLU B 231 PHE B 247 1 17 HELIX 17 17 ASP B 253 HIS B 257 5 5 SHEET 1 A12 GLU A 84 ASN A 89 0 SHEET 2 A12 GLU A 43 ASN A 51 1 N ASN A 51 O LYS A 88 SHEET 3 A12 ARG A 111 LEU A 119 1 O VAL A 117 N ILE A 48 SHEET 4 A12 LYS A 156 GLN A 161 1 O GLN A 161 N LEU A 118 SHEET 5 A12 PHE A 193 TYR A 197 1 O LEU A 194 N PHE A 158 SHEET 6 A12 CYS A 264 SER A 267 -1 O VAL A 266 N TYR A 195 SHEET 7 A12 CYS B 264 SER B 267 -1 O ILE B 265 N SER A 267 SHEET 8 A12 PHE B 193 TYR B 197 -1 N TYR B 195 O VAL B 266 SHEET 9 A12 LYS B 156 GLN B 161 1 N PHE B 158 O LEU B 194 SHEET 10 A12 ARG B 111 LEU B 119 1 N LEU B 118 O ILE B 159 SHEET 11 A12 GLU B 43 ASN B 51 1 N ILE B 48 O VAL B 117 SHEET 12 A12 GLU B 84 ASN B 89 1 O LYS B 88 N ILE B 49 SHEET 1 B 3 GLY A 122 GLU A 123 0 SHEET 2 B 3 ILE A 126 GLY A 129 -1 O ILE A 126 N GLU A 123 SHEET 3 B 3 GLY A 132 ASP A 135 -1 O GLY A 132 N GLY A 129 SHEET 1 C 2 ARG A 207 ASN A 208 0 SHEET 2 C 2 GLY A 212 SER A 213 -1 O GLY A 212 N ASN A 208 SHEET 1 D 3 GLY B 122 GLU B 123 0 SHEET 2 D 3 ILE B 126 GLY B 129 -1 O ILE B 126 N GLU B 123 SHEET 3 D 3 GLY B 132 ASP B 135 -1 O GLY B 132 N GLY B 129 SHEET 1 E 2 ARG B 207 ASN B 208 0 SHEET 2 E 2 GLY B 212 SER B 213 -1 O GLY B 212 N ASN B 208 LINK SG CYS A 163 C AKZ C 5 1555 1555 2.27 LINK SG CYS B 163 C AKZ D 5 1555 1555 2.25 LINK C ACE C 1 N ASP C 2 1555 1555 1.34 LINK C VAL C 4 N AKZ C 5 1555 1555 1.32 LINK C AKZ C 5 C1 0QE C 6 1555 1555 1.59 LINK C ACE D 1 N ASP D 2 1555 1555 1.32 LINK C VAL D 4 N AKZ D 5 1555 1555 1.33 LINK C AKZ D 5 C1 0QE D 6 1555 1555 1.59 SITE 1 AC1 4 LYS A 53 GLY A 66 THR A 67 ASP A 68 SITE 1 AC2 4 LYS B 53 GLY B 66 THR B 67 ASP B 68 SITE 1 AC3 22 ARG A 64 SER A 120 HIS A 121 GLY A 122 SITE 2 AC3 22 GLN A 161 CYS A 163 SER A 205 TRP A 206 SITE 3 AC3 22 ARG A 207 ASN A 208 SER A 209 SER A 249 SITE 4 AC3 22 PHE A 250 HOH A 447 HOH A 584 HOH A 612 SITE 5 AC3 22 HOH C 201 HOH C 202 HOH C 203 HOH C 204 SITE 6 AC3 22 HOH C 205 HOH C 206 SITE 1 AC4 22 ARG B 64 SER B 120 HIS B 121 GLY B 122 SITE 2 AC4 22 GLN B 161 CYS B 163 SER B 205 TRP B 206 SITE 3 AC4 22 ARG B 207 ASN B 208 SER B 209 TRP B 214 SITE 4 AC4 22 SER B 249 PHE B 250 HOH B 460 HOH B 494 SITE 5 AC4 22 HOH B 568 HOH D 201 HOH D 202 HOH D 203 SITE 6 AC4 22 HOH D 204 HOH D 205 CRYST1 65.988 84.751 96.641 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010348 0.00000