HEADER APOPTOSIS, HYDROLASE/HYDROLASE INHIBITOR20-MAR-13 4JR1 TITLE HUMAN PROCASPASE-7 BOUND TO AC-DEVD-CMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROCASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEASE DOMAIN (UNP RESIDUES 57-303); COMPND 5 SYNONYM: CASP-7, APOPTOTIC PROTEASE MCH-3, CMH-1, ICE-LIKE APOPTOTIC COMPND 6 PROTEASE 3, ICE-LAP3, CASPASE-7; COMPND 7 EC: 3.4.22.60; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: AC-DEVD-CMK; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ADDGENE PLASMID 29653; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEASE, PROENZYME, PROTEIN-PEPTIDE COMPLEX, IRREVERSIBLE INHIBITOR, KEYWDS 2 ACTIVITY BASED PROBE, CASPASE, APOPTOSIS, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.D.THOMSEN,J.A.WELLS REVDAT 5 20-SEP-23 4JR1 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4JR1 1 REMARK REVDAT 3 05-JUN-13 4JR1 1 JRNL REVDAT 2 22-MAY-13 4JR1 1 JRNL REVDAT 1 08-MAY-13 4JR1 0 JRNL AUTH N.D.THOMSEN,J.T.KOERBER,J.A.WELLS JRNL TITL STRUCTURAL SNAPSHOTS REVEAL DISTINCT MECHANISMS OF JRNL TITL 2 PROCASPASE-3 AND -7 ACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8477 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23650375 JRNL DOI 10.1073/PNAS.1306759110 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7214 - 4.4683 1.00 2850 153 0.1833 0.1926 REMARK 3 2 4.4683 - 3.5469 1.00 2758 143 0.1622 0.1866 REMARK 3 3 3.5469 - 3.0986 1.00 2725 140 0.1864 0.2035 REMARK 3 4 3.0986 - 2.8154 1.00 2704 152 0.2070 0.2723 REMARK 3 5 2.8154 - 2.6136 1.00 2650 166 0.2145 0.2514 REMARK 3 6 2.6136 - 2.4595 1.00 2713 144 0.2225 0.2805 REMARK 3 7 2.4595 - 2.3363 1.00 2681 137 0.2392 0.2893 REMARK 3 8 2.3363 - 2.2346 1.00 2681 127 0.2551 0.2834 REMARK 3 9 2.2346 - 2.1490 0.96 2576 141 0.2887 0.3521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3757 REMARK 3 ANGLE : 0.554 5060 REMARK 3 CHIRALITY : 0.042 547 REMARK 3 PLANARITY : 0.002 649 REMARK 3 DIHEDRAL : 10.344 1391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 56:203 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4006 -11.5434 19.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1674 REMARK 3 T33: 0.1726 T12: -0.0658 REMARK 3 T13: 0.0350 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.2853 L22: 1.9950 REMARK 3 L33: 3.2428 L12: 0.1633 REMARK 3 L13: 0.1339 L23: 0.5329 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0084 S13: 0.0229 REMARK 3 S21: -0.1603 S22: 0.0640 S23: -0.0836 REMARK 3 S31: -0.3298 S32: 0.2429 S33: 0.0466 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 204:302 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1312 -23.4492 15.1625 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.2121 REMARK 3 T33: 0.2221 T12: -0.0356 REMARK 3 T13: 0.0204 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.1936 L22: 2.4912 REMARK 3 L33: 2.3319 L12: 0.2407 REMARK 3 L13: 0.2534 L23: 0.2705 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.0316 S13: -0.0343 REMARK 3 S21: -0.0638 S22: -0.0067 S23: -0.4759 REMARK 3 S31: 0.0368 S32: 0.4067 S33: 0.0410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 56:192 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3520 -43.9156 20.4957 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.1258 REMARK 3 T33: 0.1614 T12: -0.0764 REMARK 3 T13: 0.0269 T23: -0.0588 REMARK 3 L TENSOR REMARK 3 L11: 2.4544 L22: 2.9645 REMARK 3 L33: 2.1816 L12: 0.3513 REMARK 3 L13: -0.3243 L23: -0.2411 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: 0.0682 S13: -0.1679 REMARK 3 S21: 0.1553 S22: 0.1545 S23: -0.1932 REMARK 3 S31: 0.7129 S32: -0.1444 S33: -0.0704 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 212:302 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1242 -31.7648 12.1357 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.1882 REMARK 3 T33: 0.1654 T12: -0.1288 REMARK 3 T13: 0.0234 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.6698 L22: 3.4159 REMARK 3 L33: 2.9078 L12: 0.4872 REMARK 3 L13: -0.2189 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: -0.2585 S12: 0.2829 S13: 0.1325 REMARK 3 S21: -0.3140 S22: 0.2859 S23: 0.2919 REMARK 3 S31: 0.3535 S32: -0.3869 S33: 0.0222 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 15.0625 -21.5847 32.7925 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.6067 REMARK 3 T33: 0.8246 T12: -0.0168 REMARK 3 T13: -0.0810 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 0.0418 L22: 0.0139 REMARK 3 L33: -0.0010 L12: -0.0198 REMARK 3 L13: -0.0048 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.2028 S13: -0.2310 REMARK 3 S21: -0.1746 S22: -0.4017 S23: -0.3966 REMARK 3 S31: -0.0445 S32: 1.0682 S33: -0.0090 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -26.2904 -32.1516 18.1096 REMARK 3 T TENSOR REMARK 3 T11: -0.1207 T22: 0.3982 REMARK 3 T33: 0.6039 T12: -0.4671 REMARK 3 T13: -0.1084 T23: 0.2883 REMARK 3 L TENSOR REMARK 3 L11: 0.3822 L22: 0.9974 REMARK 3 L33: 1.6514 L12: -0.6112 REMARK 3 L13: 0.1457 L23: -0.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.1341 S13: -0.1379 REMARK 3 S21: -0.0874 S22: -0.0235 S23: 0.6071 REMARK 3 S31: 0.1729 S32: -0.2978 S33: -0.9692 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.149 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 1F1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS, PH 8.0, 2 MM DTT, 50 MM REMARK 280 SODIUM CHLORIDE, 200 MM AMMONIUM FORMATE, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.79350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.79350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.64200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.00800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.64200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.00800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.79350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.64200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.00800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.79350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.64200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.00800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE AC-ASP-GLU-VAL-AKZ-CMK IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: AC-ASP-GLU-VAL-AKZ-CMK REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 54 REMARK 465 ASN A 55 REMARK 465 GLU A 190 REMARK 465 LEU A 191 REMARK 465 ASP A 192 REMARK 465 ASP A 193 REMARK 465 GLY A 194 REMARK 465 ILE A 195 REMARK 465 GLN A 196 REMARK 465 ALA A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 GLU A 274 REMARK 465 SER A 275 REMARK 465 GLN A 276 REMARK 465 SER A 277 REMARK 465 ASP A 278 REMARK 465 ASP A 279 REMARK 465 PRO A 280 REMARK 465 HIS A 281 REMARK 465 PHE A 282 REMARK 465 HIS A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 303 REMARK 465 SER B 54 REMARK 465 ASN B 55 REMARK 465 ASP B 193 REMARK 465 GLY B 194 REMARK 465 ILE B 195 REMARK 465 GLN B 196 REMARK 465 ALA B 197 REMARK 465 ALA B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 PRO B 201 REMARK 465 ILE B 202 REMARK 465 ASN B 203 REMARK 465 ASP B 204 REMARK 465 THR B 205 REMARK 465 ASP B 206 REMARK 465 ALA B 207 REMARK 465 ASN B 208 REMARK 465 PRO B 209 REMARK 465 ARG B 210 REMARK 465 TYR B 211 REMARK 465 GLN B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 146 -165.18 -124.64 REMARK 500 ARG A 237 -37.88 -130.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF AC-DEVD-CMK REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF AC-DEVD-CMK REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JQY RELATED DB: PDB REMARK 900 RELATED ID: 4JQZ RELATED DB: PDB REMARK 900 RELATED ID: 4JR0 RELATED DB: PDB REMARK 900 RELATED ID: 4JR2 RELATED DB: PDB DBREF 4JR1 A 57 303 UNP P55210 CASP7_HUMAN 57 303 DBREF 4JR1 B 57 303 UNP P55210 CASP7_HUMAN 57 303 DBREF 4JR1 C 1 6 PDB 4JR1 4JR1 1 6 DBREF 4JR1 D 1 6 PDB 4JR1 4JR1 1 6 SEQADV 4JR1 SER A 54 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ASN A 55 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ALA A 56 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ALA A 198 UNP P55210 ASP 198 ENGINEERED MUTATION SEQADV 4JR1 SER B 54 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ASN B 55 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ALA B 56 UNP P55210 EXPRESSION TAG SEQADV 4JR1 ALA B 198 UNP P55210 ASP 198 ENGINEERED MUTATION SEQRES 1 A 250 SER ASN ALA THR TYR GLN TYR ASN MET ASN PHE GLU LYS SEQRES 2 A 250 LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE ASP SEQRES 3 A 250 LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP LYS SEQRES 4 A 250 ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU GLY SEQRES 5 A 250 PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA LYS SEQRES 6 A 250 MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP HIS SEQRES 7 A 250 THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER HIS SEQRES 8 A 250 GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL THR SEQRES 9 A 250 PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP ARG SEQRES 10 A 250 CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE ILE SEQRES 11 A 250 GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE GLN SEQRES 12 A 250 ALA ALA SER GLY PRO ILE ASN ASP THR ASP ALA ASN PRO SEQRES 13 A 250 ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE ALA SEQRES 14 A 250 TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SER PRO SEQRES 15 A 250 GLY ARG GLY SER TRP PHE VAL GLN ALA LEU CYS SER ILE SEQRES 16 A 250 LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET GLN ILE SEQRES 17 A 250 LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE GLU SEQRES 18 A 250 SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS LYS GLN SEQRES 19 A 250 ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU LEU TYR SEQRES 20 A 250 PHE SER GLN SEQRES 1 B 250 SER ASN ALA THR TYR GLN TYR ASN MET ASN PHE GLU LYS SEQRES 2 B 250 LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE ASP SEQRES 3 B 250 LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP LYS SEQRES 4 B 250 ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU GLY SEQRES 5 B 250 PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA LYS SEQRES 6 B 250 MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP HIS SEQRES 7 B 250 THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER HIS SEQRES 8 B 250 GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL THR SEQRES 9 B 250 PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP ARG SEQRES 10 B 250 CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE ILE SEQRES 11 B 250 GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE GLN SEQRES 12 B 250 ALA ALA SER GLY PRO ILE ASN ASP THR ASP ALA ASN PRO SEQRES 13 B 250 ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE ALA SEQRES 14 B 250 TYR SER THR VAL PRO GLY TYR TYR SER TRP ARG SER PRO SEQRES 15 B 250 GLY ARG GLY SER TRP PHE VAL GLN ALA LEU CYS SER ILE SEQRES 16 B 250 LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE MET GLN ILE SEQRES 17 B 250 LEU THR ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE GLU SEQRES 18 B 250 SER GLN SER ASP ASP PRO HIS PHE HIS GLU LYS LYS GLN SEQRES 19 B 250 ILE PRO CYS VAL VAL SER MET LEU THR LYS GLU LEU TYR SEQRES 20 B 250 PHE SER GLN SEQRES 1 C 6 ACE ASP GLU VAL AKZ 0QE SEQRES 1 D 6 ACE ASP GLU VAL AKZ 0QE MODRES 4JR1 AKZ C 5 ASP (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID MODRES 4JR1 AKZ D 5 ASP (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID HET ACE C 1 3 HET AKZ C 5 8 HET 0QE C 6 1 HET ACE D 1 3 HET AKZ D 5 8 HET 0QE D 6 1 HET CL A 401 1 HET CL B 401 1 HETNAM ACE ACETYL GROUP HETNAM AKZ (3S)-3-AMINO-4,4-DIHYDROXYBUTANOIC ACID HETNAM 0QE CHLOROMETHANE HETNAM CL CHLORIDE ION HETSYN 0QE CHLORO METHYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 AKZ 2(C4 H9 N O4) FORMUL 3 0QE 2(C H3 CL) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *203(H2 O) HELIX 1 1 ASP A 79 GLY A 83 5 5 HELIX 2 2 GLY A 89 SER A 103 1 15 HELIX 3 3 SER A 115 GLU A 128 1 14 HELIX 4 4 ILE A 159 ALA A 164 1 6 HELIX 5 5 HIS A 165 ARG A 167 5 3 HELIX 6 6 CYS A 171 LEU A 175 5 5 HELIX 7 7 TRP A 240 GLY A 253 1 14 HELIX 8 8 GLU A 257 ARG A 271 1 15 HELIX 9 9 GLY B 89 GLY B 105 1 17 HELIX 10 10 SER B 115 GLU B 128 1 14 HELIX 11 11 ILE B 159 ALA B 164 1 6 HELIX 12 12 HIS B 165 ARG B 167 5 3 HELIX 13 13 CYS B 171 LEU B 175 5 5 HELIX 14 14 TRP B 240 GLY B 253 1 14 HELIX 15 15 GLU B 257 PHE B 273 1 17 HELIX 16 16 ASP B 279 HIS B 283 5 5 SHEET 1 A12 ASP A 107 ASN A 112 0 SHEET 2 A12 LYS A 69 ASN A 74 1 N ASN A 74 O TYR A 111 SHEET 3 A12 PHE A 137 LEU A 142 1 O ILE A 140 N ILE A 73 SHEET 4 A12 LYS A 179 GLN A 184 1 O PHE A 182 N LEU A 141 SHEET 5 A12 PHE A 219 TYR A 223 1 O ALA A 222 N PHE A 181 SHEET 6 A12 CYS A 290 SER A 293 -1 O VAL A 292 N PHE A 221 SHEET 7 A12 CYS B 290 SER B 293 -1 O SER B 293 N VAL A 291 SHEET 8 A12 PHE B 219 TYR B 223 -1 N PHE B 221 O VAL B 292 SHEET 9 A12 LYS B 179 GLN B 184 1 N PHE B 181 O ALA B 222 SHEET 10 A12 ALA B 134 LEU B 142 1 N LEU B 141 O GLN B 184 SHEET 11 A12 LYS B 66 ASN B 74 1 N ILE B 73 O ILE B 140 SHEET 12 A12 PHE B 106 ASN B 112 1 O TYR B 111 N ASN B 74 SHEET 1 B 3 GLY A 145 GLU A 146 0 SHEET 2 B 3 VAL A 149 TYR A 151 -1 O VAL A 149 N GLU A 146 SHEET 3 B 3 VAL A 156 PRO A 158 -1 O THR A 157 N ILE A 150 SHEET 1 C 2 ARG A 233 SER A 234 0 SHEET 2 C 2 GLY A 238 SER A 239 -1 O GLY A 238 N SER A 234 SHEET 1 D 3 GLY B 145 GLU B 146 0 SHEET 2 D 3 VAL B 149 GLY B 152 -1 O VAL B 149 N GLU B 146 SHEET 3 D 3 GLY B 155 PRO B 158 -1 O GLY B 155 N GLY B 152 SHEET 1 E 2 ARG B 233 SER B 234 0 SHEET 2 E 2 GLY B 238 SER B 239 -1 O GLY B 238 N SER B 234 SSBOND 1 CYS A 100 CYS A 246 1555 1555 2.03 SSBOND 2 CYS B 100 CYS B 246 1555 1555 2.03 LINK SG CYS A 186 C AKZ C 5 1555 1555 2.20 LINK SG CYS B 186 C AKZ D 5 1555 1555 2.20 LINK C ACE C 1 N ASP C 2 1555 1555 1.33 LINK C VAL C 4 N AKZ C 5 1555 1555 1.33 LINK C AKZ C 5 C1 0QE C 6 1555 1555 1.59 LINK C ACE D 1 N ASP D 2 1555 1555 1.33 LINK C VAL D 4 N AKZ D 5 1555 1555 1.33 LINK C AKZ D 5 C1 0QE D 6 1555 1555 1.59 SITE 1 AC1 4 LYS A 76 GLY A 89 THR A 90 ASP A 91 SITE 1 AC2 5 LYS B 76 ASN B 88 GLY B 89 THR B 90 SITE 2 AC2 5 ASP B 91 SITE 1 AC3 12 ARG A 87 HIS A 144 GLY A 145 GLN A 184 SITE 2 AC3 12 CYS A 186 TYR A 230 SER A 231 TRP A 232 SITE 3 AC3 12 ARG A 233 SER A 234 PRO A 235 TRP A 240 SITE 1 AC4 14 ARG B 87 HIS B 144 GLY B 145 GLN B 184 SITE 2 AC4 14 CYS B 186 TYR B 230 SER B 231 TRP B 232 SITE 3 AC4 14 ARG B 233 PRO B 235 SER B 275 GLN B 276 SITE 4 AC4 14 HOH D 201 HOH D 202 CRYST1 57.284 100.016 161.587 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006189 0.00000