data_4JRD
# 
_entry.id   4JRD 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4JRD         pdb_00004jrd 10.2210/pdb4jrd/pdb 
NDB   NA2300       ?            ?                   
RCSB  RCSB078407   ?            ?                   
WWPDB D_1000078407 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2013-06-05 
2 'Structure model' 1 1 2015-08-12 
3 'Structure model' 1 2 2024-02-28 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'  
2 3 'Structure model' 'Data collection'      
3 3 'Structure model' 'Database references'  
4 3 'Structure model' 'Derived calculations' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom 
2 3 'Structure model' chem_comp_bond 
3 3 'Structure model' database_2     
4 3 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                
2 3 'Structure model' '_database_2.pdbx_database_accession' 
3 3 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 3 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 3 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4JRD 
_pdbx_database_status.recvd_initial_deposition_date   2013-03-21 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Safaee, N.'      1 
'Noronha, A.M.'   2 
'Kozlov, G.'      3 
'Rodionov, D.'    4 
'Wilds, C.J.'     5 
'Sheldrick, G.M.' 6 
'Gehring, K.'     7 
# 
_citation.id                        primary 
_citation.title                     'Structure of the parallel duplex of poly(A) RNA: evaluation of a 50 year-old prediction.' 
_citation.journal_abbrev            Angew.Chem.Int.Ed.Engl. 
_citation.journal_volume            52 
_citation.page_first                10370 
_citation.page_last                 10373 
_citation.year                      2013 
_citation.journal_id_ASTM           ? 
_citation.country                   GE 
_citation.journal_id_ISSN           1433-7851 
_citation.journal_id_CSD            9999 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   23813654 
_citation.pdbx_database_id_DOI      10.1002/anie.201303461 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Safaee, N.'      1 ? 
primary 'Noronha, A.M.'   2 ? 
primary 'Rodionov, D.'    3 ? 
primary 'Kozlov, G.'      4 ? 
primary 'Wilds, C.J.'     5 ? 
primary 'Sheldrick, G.M.' 6 ? 
primary 'Gehring, K.'     7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
;
3576.306 2  ? ? ? ? 
2 non-polymer syn 'AMMONIUM ION'                                    18.038   18 ? ? ? ? 
3 water       nat water                                             18.015   76 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       AAAAAAAAAAA 
_entity_poly.pdbx_seq_one_letter_code_can   AAAAAAAAAAA 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'AMMONIUM ION' NH4 
3 water          HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  A n 
1 2  A n 
1 3  A n 
1 4  A n 
1 5  A n 
1 6  A n 
1 7  A n 
1 8  A n 
1 9  A n 
1 10 A n 
1 11 A n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
HOH non-polymer   . WATER                        ? 'H2 O'            18.015  
NH4 non-polymer   . 'AMMONIUM ION'               ? 'H4 N 1'          18.038  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  A 1  1  1  A A A . n 
A 1 2  A 2  2  2  A A A . n 
A 1 3  A 3  3  3  A A A . n 
A 1 4  A 4  4  4  A A A . n 
A 1 5  A 5  5  5  A A A . n 
A 1 6  A 6  6  6  A A A . n 
A 1 7  A 7  7  7  A A A . n 
A 1 8  A 8  8  8  A A A . n 
A 1 9  A 9  9  9  A A A . n 
A 1 10 A 10 10 10 A A A . n 
A 1 11 A 11 11 11 A A A . n 
B 1 1  A 1  1  1  A A B . n 
B 1 2  A 2  2  2  A A B . n 
B 1 3  A 3  3  3  A A B . n 
B 1 4  A 4  4  4  A A B . n 
B 1 5  A 5  5  5  A A B . n 
B 1 6  A 6  6  6  A A B . n 
B 1 7  A 7  7  7  A A B . n 
B 1 8  A 8  8  8  A A B . n 
B 1 9  A 9  9  9  A A B . n 
B 1 10 A 10 10 10 A A B . n 
B 1 11 A 11 11 11 A A B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 NH4 1  101 101 NH4 NH4 A . 
D 2 NH4 1  102 102 NH4 NH4 A . 
E 2 NH4 1  103 103 NH4 NH4 A . 
F 2 NH4 1  104 104 NH4 NH4 A . 
G 2 NH4 1  105 105 NH4 NH4 A . 
H 2 NH4 1  106 106 NH4 NH4 A . 
I 2 NH4 1  107 107 NH4 NH4 A . 
J 2 NH4 1  108 108 NH4 NH4 A . 
K 2 NH4 1  109 109 NH4 NH4 A . 
L 2 NH4 1  110 110 NH4 NH4 A . 
M 2 NH4 1  111 111 NH4 NH4 A . 
N 2 NH4 1  101 101 NH4 NH4 B . 
O 2 NH4 1  102 102 NH4 NH4 B . 
P 2 NH4 1  103 103 NH4 NH4 B . 
Q 2 NH4 1  104 104 NH4 NH4 B . 
R 2 NH4 1  105 105 NH4 NH4 B . 
S 2 NH4 1  106 106 NH4 NH4 B . 
T 2 NH4 1  107 107 NH4 NH4 B . 
U 3 HOH 1  201 201 HOH HOH A . 
U 3 HOH 2  202 202 HOH HOH A . 
U 3 HOH 3  203 203 HOH HOH A . 
U 3 HOH 4  204 204 HOH HOH A . 
U 3 HOH 5  205 205 HOH HOH A . 
U 3 HOH 6  206 206 HOH HOH A . 
U 3 HOH 7  207 207 HOH HOH A . 
U 3 HOH 8  208 208 HOH HOH A . 
U 3 HOH 9  209 209 HOH HOH A . 
U 3 HOH 10 210 210 HOH HOH A . 
U 3 HOH 11 211 211 HOH HOH A . 
U 3 HOH 12 212 212 HOH HOH A . 
U 3 HOH 13 213 213 HOH HOH A . 
U 3 HOH 14 214 214 HOH HOH A . 
U 3 HOH 15 215 215 HOH HOH A . 
U 3 HOH 16 216 216 HOH HOH A . 
U 3 HOH 17 217 217 HOH HOH A . 
U 3 HOH 18 218 218 HOH HOH A . 
U 3 HOH 19 219 219 HOH HOH A . 
U 3 HOH 20 220 220 HOH HOH A . 
U 3 HOH 21 221 221 HOH HOH A . 
U 3 HOH 22 222 222 HOH HOH A . 
U 3 HOH 23 223 223 HOH HOH A . 
U 3 HOH 24 224 224 HOH HOH A . 
U 3 HOH 25 225 225 HOH HOH A . 
U 3 HOH 26 226 226 HOH HOH A . 
U 3 HOH 27 227 227 HOH HOH A . 
U 3 HOH 28 228 228 HOH HOH A . 
U 3 HOH 29 229 229 HOH HOH A . 
U 3 HOH 30 230 230 HOH HOH A . 
U 3 HOH 31 231 231 HOH HOH A . 
U 3 HOH 32 232 232 HOH HOH A . 
U 3 HOH 33 233 233 HOH HOH A . 
U 3 HOH 34 234 234 HOH HOH A . 
V 3 HOH 1  201 201 HOH HOH B . 
V 3 HOH 2  202 202 HOH HOH B . 
V 3 HOH 3  203 203 HOH HOH B . 
V 3 HOH 4  204 204 HOH HOH B . 
V 3 HOH 5  205 205 HOH HOH B . 
V 3 HOH 6  206 206 HOH HOH B . 
V 3 HOH 7  207 207 HOH HOH B . 
V 3 HOH 8  208 208 HOH HOH B . 
V 3 HOH 9  209 209 HOH HOH B . 
V 3 HOH 10 210 210 HOH HOH B . 
V 3 HOH 11 211 211 HOH HOH B . 
V 3 HOH 12 212 212 HOH HOH B . 
V 3 HOH 13 213 213 HOH HOH B . 
V 3 HOH 14 214 214 HOH HOH B . 
V 3 HOH 15 215 215 HOH HOH B . 
V 3 HOH 16 216 216 HOH HOH B . 
V 3 HOH 17 217 217 HOH HOH B . 
V 3 HOH 18 218 218 HOH HOH B . 
V 3 HOH 19 219 219 HOH HOH B . 
V 3 HOH 20 220 220 HOH HOH B . 
V 3 HOH 21 221 221 HOH HOH B . 
V 3 HOH 22 222 222 HOH HOH B . 
V 3 HOH 23 223 223 HOH HOH B . 
V 3 HOH 24 224 224 HOH HOH B . 
V 3 HOH 25 225 225 HOH HOH B . 
V 3 HOH 26 226 226 HOH HOH B . 
V 3 HOH 27 227 227 HOH HOH B . 
V 3 HOH 28 228 228 HOH HOH B . 
V 3 HOH 29 229 229 HOH HOH B . 
V 3 HOH 30 230 230 HOH HOH B . 
V 3 HOH 31 231 231 HOH HOH B . 
V 3 HOH 32 232 232 HOH HOH B . 
V 3 HOH 33 233 233 HOH HOH B . 
V 3 HOH 34 234 234 HOH HOH B . 
V 3 HOH 35 235 235 HOH HOH B . 
V 3 HOH 36 236 236 HOH HOH B . 
V 3 HOH 37 237 237 HOH HOH B . 
V 3 HOH 38 238 238 HOH HOH B . 
V 3 HOH 39 239 239 HOH HOH B . 
V 3 HOH 40 240 240 HOH HOH B . 
V 3 HOH 41 241 241 HOH HOH B . 
V 3 HOH 42 242 242 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
MxDC     'data collection' . ? 1 
SHELXD   phasing           . ? 2 
SHELXL   refinement        . ? 3 
HKL-2000 'data reduction'  . ? 4 
HKL-2000 'data scaling'    . ? 5 
# 
_cell.entry_id           4JRD 
_cell.length_a           22.800 
_cell.length_b           22.800 
_cell.length_c           163.700 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              16 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4JRD 
_symmetry.space_group_name_H-M             'P 41 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                92 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          4JRD 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   5 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.49 
_exptl_crystal.density_percent_sol   17.29 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            294 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    
;RNA WATER SOLUTION PLUS BUFFER (10 MM HEPES, 50 MM NACL, 0.5 MM TCEP, PH 7.0) MIXED 1:1 V/V WITH 2 M (NH4)2SO4 + 0.2 M NH4NO3 AND EQUILIBRATED AGAINST 2 M (NH4)2SO4 + 0.2 M NH4NO3, VAPOR DIFFUSION, SITTING DROP, temperature 294K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_diffrn.id 
_diffrn.ambient_temp 
_diffrn.ambient_temp_details 
_diffrn.crystal_id 
1 100 ? 1 
2 100 ? 1 
3 100 ? 1 
4 100 ? 1 
# 
loop_
_diffrn_detector.diffrn_id 
_diffrn_detector.detector 
_diffrn_detector.type 
_diffrn_detector.pdbx_collection_date 
_diffrn_detector.details 
1 CCD 'MARMOSAIC 300 mm CCD' 2010-05-29 'FOCUSING MIRRORS' 
2 CCD 'ADSC QUANTUM 210'     2010-10-21 'FOCUSING MIRRORS' 
3 CCD 'ADSC QUANTUM 210'     2010-10-21 'FOCUSING MIRRORS' 
4 CCD 'ADSC QUANTUM 210'     2010-10-21 'FOCUSING MIRRORS' 
# 
loop_
_diffrn_radiation.diffrn_id 
_diffrn_radiation.wavelength_id 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l 
_diffrn_radiation.monochromator 
_diffrn_radiation.pdbx_diffrn_protocol 
_diffrn_radiation.pdbx_scattering_type 
1 1 M 'SI 111 DOUBLE'                                     'SINGLE WAVELENGTH' x-ray 
2 1 M 'Horizontal focusing 5.05   asymmetric cut Si(111)' 'SINGLE WAVELENGTH' x-ray 
3 1 M 'Horizontal focusing 5.05   asymmetric cut Si(111)' 'SINGLE WAVELENGTH' x-ray 
4 1 M 'Horizontal focusing 5.05   asymmetric cut Si(111)' 'SINGLE WAVELENGTH' x-ray 
# 
loop_
_diffrn_radiation_wavelength.id 
_diffrn_radiation_wavelength.wavelength 
_diffrn_radiation_wavelength.wt 
1 0.977 1.0 
2 0.987 1.0 
# 
loop_
_diffrn_source.diffrn_id 
_diffrn_source.source 
_diffrn_source.type 
_diffrn_source.pdbx_synchrotron_site 
_diffrn_source.pdbx_synchrotron_beamline 
_diffrn_source.pdbx_wavelength 
_diffrn_source.pdbx_wavelength_list 
1 SYNCHROTRON 'CLSI BEAMLINE 08ID-1' CLSI  08ID-1 0.977 ? 
2 SYNCHROTRON 'CHESS BEAMLINE A1'    CHESS A1     0.987 ? 
3 SYNCHROTRON 'CHESS BEAMLINE A1'    CHESS A1     0.987 ? 
4 SYNCHROTRON 'CHESS BEAMLINE A1'    CHESS A1     0.987 ? 
# 
_reflns.entry_id                     4JRD 
_reflns.observed_criterion_sigma_I   -3.000 
_reflns.observed_criterion_sigma_F   4 
_reflns.d_resolution_low             41.000 
_reflns.d_resolution_high            1.000 
_reflns.number_obs                   22972 
_reflns.number_all                   23042 
_reflns.percent_possible_obs         92.6 
_reflns.pdbx_Rmerge_I_obs            0.09440 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        34.3500 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              2.730 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1,2,3,4 
# 
_reflns_shell.d_res_high             1.00 
_reflns_shell.d_res_low              1.10 
_reflns_shell.percent_possible_all   73.1 
_reflns_shell.Rmerge_I_obs           0.14190 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    4.720 
_reflns_shell.pdbx_redundancy        1.20 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1,2,3,4 
# 
_refine.entry_id                                 4JRD 
_refine.ls_number_reflns_obs                     22972 
_refine.ls_number_reflns_all                     23042 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          1.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             41.00 
_refine.ls_d_res_high                            1.00 
_refine.ls_percent_reflns_obs                    92.6 
_refine.ls_R_factor_obs                          0.126 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.118 
_refine.ls_R_factor_R_free                       0.158 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5.010 
_refine.ls_number_reflns_R_free                  1152 
_refine.ls_number_parameters                     5165 
_refine.ls_number_restraints                     6773 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    BABINET 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               'FREE R' 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'AB INITIO PHASING' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1,2,3,4 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        4JRD 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      0 
_refine_analyze.occupancy_sum_hydrogen          242.00 
_refine_analyze.occupancy_sum_non_hydrogen      571.00 
_refine_analyze.pdbx_Luzzati_d_res_high_obs     ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   478 
_refine_hist.pdbx_number_atoms_ligand         18 
_refine_hist.number_atoms_solvent             76 
_refine_hist.number_atoms_total               572 
_refine_hist.d_res_high                       1.00 
_refine_hist.d_res_low                        41.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
s_bond_d               0.007 ? ? ? ? 'X-RAY DIFFRACTION' 
s_angle_d              0.021 ? ? ? ? 'X-RAY DIFFRACTION' 
s_from_restr_planes    0.038 ? ? ? ? 'X-RAY DIFFRACTION' 
s_anti_bump_dis_restr  0.021 ? ? ? ? 'X-RAY DIFFRACTION' 
s_rigid_bond_adp_cmpnt 0.005 ? ? ? ? 'X-RAY DIFFRACTION' 
s_similar_adp_cmpnt    0.015 ? ? ? ? 'X-RAY DIFFRACTION' 
s_approx_iso_adps      0.100 ? ? ? ? 'X-RAY DIFFRACTION' 
# 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.entry_id                                    4JRD 
_pdbx_refine.R_factor_all_no_cutoff                      0.128 
_pdbx_refine.R_factor_obs_no_cutoff                      0.126 
_pdbx_refine.free_R_factor_no_cutoff                     0.158 
_pdbx_refine.free_R_error_no_cutoff                      ? 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     5.010 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            1152 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.120 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.118 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.151 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   5.260 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          986 
_pdbx_refine.number_reflns_obs_4sig_cutoff               18730 
# 
_database_PDB_matrix.entry_id          4JRD 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  4JRD 
_struct.title                     'Crystal structure of the parallel double-stranded helix of poly(A) RNA' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4JRD 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'PARALLEL DOUBLE HELIX, POLY(A), MRNA, PABP, Poly(A) motif, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 2 ? 
I N N 2 ? 
J N N 2 ? 
K N N 2 ? 
L N N 2 ? 
M N N 2 ? 
N N N 2 ? 
O N N 2 ? 
P N N 2 ? 
Q N N 2 ? 
R N N 2 ? 
S N N 2 ? 
T N N 2 ? 
U N N 3 ? 
V N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4JRD 
_struct_ref.pdbx_db_accession          4JRD 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 4JRD A 1 ? 11 ? 4JRD 1 ? 11 ? 1 11 
2 1 4JRD B 1 ? 11 ? 4JRD 1 ? 11 ? 1 11 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A A 2  N6 ? ? ? 1_555 B A 1  N7 ? ? A A 2  B A 1  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog2  hydrog ? ? A A 2  N7 ? ? ? 1_555 B A 1  N6 ? ? A A 2  B A 1  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog3  hydrog ? ? A A 3  N6 ? ? ? 1_555 B A 2  N7 ? ? A A 3  B A 2  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog4  hydrog ? ? A A 3  N7 ? ? ? 1_555 B A 2  N6 ? ? A A 3  B A 2  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog5  hydrog ? ? A A 4  N6 ? ? ? 1_555 B A 3  N7 ? ? A A 4  B A 3  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog6  hydrog ? ? A A 4  N7 ? ? ? 1_555 B A 3  N6 ? ? A A 4  B A 3  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog7  hydrog ? ? A A 5  N6 ? ? ? 1_555 B A 4  N7 ? ? A A 5  B A 4  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog8  hydrog ? ? A A 5  N7 ? ? ? 1_555 B A 4  N6 ? ? A A 5  B A 4  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog9  hydrog ? ? A A 6  N6 ? ? ? 1_555 B A 5  N7 ? ? A A 6  B A 5  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog10 hydrog ? ? A A 6  N7 ? ? ? 1_555 B A 5  N6 ? ? A A 6  B A 5  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog11 hydrog ? ? A A 7  N6 ? ? ? 1_555 B A 6  N7 ? ? A A 7  B A 6  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog12 hydrog ? ? A A 7  N7 ? ? ? 1_555 B A 6  N6 ? ? A A 7  B A 6  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog13 hydrog ? ? A A 8  N6 ? ? ? 1_555 B A 7  N7 ? ? A A 8  B A 7  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog14 hydrog ? ? A A 8  N7 ? ? ? 1_555 B A 7  N6 ? ? A A 8  B A 7  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog15 hydrog ? ? A A 9  N6 ? ? ? 1_555 B A 8  N7 ? ? A A 9  B A 8  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog16 hydrog ? ? A A 9  N7 ? ? ? 1_555 B A 8  N6 ? ? A A 9  B A 8  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog17 hydrog ? ? A A 10 N6 ? ? ? 1_555 B A 9  N7 ? ? A A 10 B A 9  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog18 hydrog ? ? A A 10 N7 ? ? ? 1_555 B A 9  N6 ? ? A A 10 B A 9  1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog19 hydrog ? ? A A 11 N6 ? ? ? 1_555 B A 10 N7 ? ? A A 11 B A 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
hydrog20 hydrog ? ? A A 11 N7 ? ? ? 1_555 B A 10 N6 ? ? A A 11 B A 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A NH4 101 ? 3 'BINDING SITE FOR RESIDUE NH4 A 101' 
AC2 Software A NH4 102 ? 4 'BINDING SITE FOR RESIDUE NH4 A 102' 
AC3 Software A NH4 103 ? 4 'BINDING SITE FOR RESIDUE NH4 A 103' 
AC4 Software A NH4 104 ? 6 'BINDING SITE FOR RESIDUE NH4 A 104' 
AC5 Software A NH4 105 ? 4 'BINDING SITE FOR RESIDUE NH4 A 105' 
AC6 Software A NH4 106 ? 1 'BINDING SITE FOR RESIDUE NH4 A 106' 
AC7 Software A NH4 107 ? 5 'BINDING SITE FOR RESIDUE NH4 A 107' 
AC8 Software A NH4 108 ? 5 'BINDING SITE FOR RESIDUE NH4 A 108' 
AC9 Software A NH4 109 ? 5 'BINDING SITE FOR RESIDUE NH4 A 109' 
BC1 Software A NH4 110 ? 5 'BINDING SITE FOR RESIDUE NH4 A 110' 
BC2 Software A NH4 111 ? 4 'BINDING SITE FOR RESIDUE NH4 A 111' 
BC3 Software B NH4 101 ? 4 'BINDING SITE FOR RESIDUE NH4 B 101' 
BC4 Software B NH4 102 ? 5 'BINDING SITE FOR RESIDUE NH4 B 102' 
BC5 Software B NH4 103 ? 6 'BINDING SITE FOR RESIDUE NH4 B 103' 
BC6 Software B NH4 104 ? 6 'BINDING SITE FOR RESIDUE NH4 B 104' 
BC7 Software B NH4 105 ? 5 'BINDING SITE FOR RESIDUE NH4 B 105' 
BC8 Software B NH4 106 ? 5 'BINDING SITE FOR RESIDUE NH4 B 106' 
BC9 Software B NH4 107 ? 5 'BINDING SITE FOR RESIDUE NH4 B 107' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 3 A   A 2  ? A   A 2   . ? 1_555 ? 
2  AC1 3 A   A 3  ? A   A 3   . ? 1_555 ? 
3  AC1 3 A   B 2  ? A   B 2   . ? 1_555 ? 
4  AC2 4 A   A 3  ? A   A 3   . ? 1_555 ? 
5  AC2 4 A   A 4  ? A   A 4   . ? 1_555 ? 
6  AC2 4 A   A 11 ? A   A 11  . ? 7_645 ? 
7  AC2 4 A   B 3  ? A   B 3   . ? 1_555 ? 
8  AC3 4 A   A 6  ? A   A 6   . ? 1_555 ? 
9  AC3 4 A   A 7  ? A   A 7   . ? 1_555 ? 
10 AC3 4 HOH U .  ? HOH A 216 . ? 7_655 ? 
11 AC3 4 A   B 6  ? A   B 6   . ? 1_555 ? 
12 AC4 6 A   A 5  ? A   A 5   . ? 7_545 ? 
13 AC4 6 A   A 9  ? A   A 9   . ? 1_555 ? 
14 AC4 6 A   A 10 ? A   A 10  . ? 1_555 ? 
15 AC4 6 A   B 9  ? A   B 9   . ? 1_555 ? 
16 AC4 6 A   B 10 ? A   B 10  . ? 1_555 ? 
17 AC4 6 NH4 P .  ? NH4 B 103 . ? 7_545 ? 
18 AC5 4 A   A 4  ? A   A 4   . ? 7_545 ? 
19 AC5 4 A   A 10 ? A   A 10  . ? 1_555 ? 
20 AC5 4 A   A 11 ? A   A 11  . ? 1_555 ? 
21 AC5 4 A   B 10 ? A   B 10  . ? 1_555 ? 
22 AC6 1 A   A 11 ? A   A 11  . ? 1_555 ? 
23 AC7 5 A   A 7  ? A   A 7   . ? 1_555 ? 
24 AC7 5 A   A 8  ? A   A 8   . ? 1_555 ? 
25 AC7 5 HOH U .  ? HOH A 213 . ? 7_555 ? 
26 AC7 5 A   B 7  ? A   B 7   . ? 1_555 ? 
27 AC7 5 A   B 8  ? A   B 8   . ? 1_555 ? 
28 AC8 5 A   A 8  ? A   A 8   . ? 1_555 ? 
29 AC8 5 A   A 9  ? A   A 9   . ? 1_555 ? 
30 AC8 5 HOH U .  ? HOH A 233 . ? 1_555 ? 
31 AC8 5 A   B 8  ? A   B 8   . ? 1_555 ? 
32 AC8 5 A   B 9  ? A   B 9   . ? 1_555 ? 
33 AC9 5 A   A 4  ? A   A 4   . ? 1_555 ? 
34 AC9 5 A   A 5  ? A   A 5   . ? 1_555 ? 
35 AC9 5 HOH U .  ? HOH A 234 . ? 1_555 ? 
36 AC9 5 A   B 4  ? A   B 4   . ? 1_555 ? 
37 AC9 5 A   B 5  ? A   B 5   . ? 1_555 ? 
38 BC1 5 A   A 7  ? A   A 7   . ? 1_555 ? 
39 BC1 5 A   A 8  ? A   A 8   . ? 1_555 ? 
40 BC1 5 HOH U .  ? HOH A 227 . ? 1_555 ? 
41 BC1 5 A   B 5  ? A   B 5   . ? 1_555 ? 
42 BC1 5 A   B 6  ? A   B 6   . ? 1_555 ? 
43 BC2 4 A   A 10 ? A   A 10  . ? 1_555 ? 
44 BC2 4 A   A 11 ? A   A 11  . ? 1_555 ? 
45 BC2 4 A   B 8  ? A   B 8   . ? 1_555 ? 
46 BC2 4 A   B 9  ? A   B 9   . ? 1_555 ? 
47 BC3 4 A   A 1  ? A   A 1   . ? 3_645 ? 
48 BC3 4 A   A 11 ? A   A 11  . ? 1_555 ? 
49 BC3 4 A   B 9  ? A   B 9   . ? 1_555 ? 
50 BC3 4 A   B 10 ? A   B 10  . ? 1_555 ? 
51 BC4 5 A   A 3  ? A   A 3   . ? 1_555 ? 
52 BC4 5 A   A 4  ? A   A 4   . ? 1_555 ? 
53 BC4 5 A   B 1  ? A   B 1   . ? 1_555 ? 
54 BC4 5 A   B 2  ? A   B 2   . ? 1_555 ? 
55 BC4 5 HOH V .  ? HOH B 201 . ? 1_555 ? 
56 BC5 6 A   A 5  ? A   A 5   . ? 1_555 ? 
57 BC5 6 A   A 6  ? A   A 6   . ? 1_555 ? 
58 BC5 6 A   A 9  ? A   A 9   . ? 7_655 ? 
59 BC5 6 NH4 F .  ? NH4 A 104 . ? 7_655 ? 
60 BC5 6 A   B 5  ? A   B 5   . ? 1_555 ? 
61 BC5 6 A   B 6  ? A   B 6   . ? 1_555 ? 
62 BC6 6 A   A 9  ? A   A 9   . ? 1_555 ? 
63 BC6 6 A   A 10 ? A   A 10  . ? 1_555 ? 
64 BC6 6 A   B 5  ? A   B 5   . ? 7_645 ? 
65 BC6 6 A   B 7  ? A   B 7   . ? 1_555 ? 
66 BC6 6 A   B 8  ? A   B 8   . ? 1_555 ? 
67 BC6 6 HOH V .  ? HOH B 213 . ? 7_645 ? 
68 BC7 5 A   A 4  ? A   A 4   . ? 1_555 ? 
69 BC7 5 A   A 5  ? A   A 5   . ? 1_555 ? 
70 BC7 5 A   B 2  ? A   B 2   . ? 1_555 ? 
71 BC7 5 A   B 3  ? A   B 3   . ? 1_555 ? 
72 BC7 5 HOH V .  ? HOH B 204 . ? 7_555 ? 
73 BC8 5 A   A 6  ? A   A 6   . ? 1_555 ? 
74 BC8 5 A   A 7  ? A   A 7   . ? 1_555 ? 
75 BC8 5 A   B 4  ? A   B 4   . ? 1_555 ? 
76 BC8 5 A   B 5  ? A   B 5   . ? 1_555 ? 
77 BC8 5 HOH V .  ? HOH B 210 . ? 7_545 ? 
78 BC9 5 A   A 5  ? A   A 5   . ? 1_555 ? 
79 BC9 5 A   A 6  ? A   A 6   . ? 1_555 ? 
80 BC9 5 A   B 3  ? A   B 3   . ? 1_555 ? 
81 BC9 5 A   B 4  ? A   B 4   . ? 1_555 ? 
82 BC9 5 HOH V .  ? HOH B 214 . ? 1_555 ? 
# 
_pdbx_validate_rmsd_angle.id                         1 
_pdbx_validate_rmsd_angle.PDB_model_num              1 
_pdbx_validate_rmsd_angle.auth_atom_id_1             N1 
_pdbx_validate_rmsd_angle.auth_asym_id_1             A 
_pdbx_validate_rmsd_angle.auth_comp_id_1             A 
_pdbx_validate_rmsd_angle.auth_seq_id_1              3 
_pdbx_validate_rmsd_angle.PDB_ins_code_1             ? 
_pdbx_validate_rmsd_angle.label_alt_id_1             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_2             C2 
_pdbx_validate_rmsd_angle.auth_asym_id_2             A 
_pdbx_validate_rmsd_angle.auth_comp_id_2             A 
_pdbx_validate_rmsd_angle.auth_seq_id_2              3 
_pdbx_validate_rmsd_angle.PDB_ins_code_2             ? 
_pdbx_validate_rmsd_angle.label_alt_id_2             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_3             N3 
_pdbx_validate_rmsd_angle.auth_asym_id_3             A 
_pdbx_validate_rmsd_angle.auth_comp_id_3             A 
_pdbx_validate_rmsd_angle.auth_seq_id_3              3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3             ? 
_pdbx_validate_rmsd_angle.label_alt_id_3             ? 
_pdbx_validate_rmsd_angle.angle_value                134.20 
_pdbx_validate_rmsd_angle.angle_target_value         129.30 
_pdbx_validate_rmsd_angle.angle_deviation            4.90 
_pdbx_validate_rmsd_angle.angle_standard_deviation   0.50 
_pdbx_validate_rmsd_angle.linker_flag                N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 A A 1  ? ? 0.079 'SIDE CHAIN' 
2 1 A A 3  ? ? 0.067 'SIDE CHAIN' 
3 1 A A 4  ? ? 0.055 'SIDE CHAIN' 
4 1 A A 7  ? ? 0.053 'SIDE CHAIN' 
5 1 A A 9  ? ? 0.055 'SIDE CHAIN' 
6 1 A B 4  ? ? 0.084 'SIDE CHAIN' 
7 1 A B 11 ? ? 0.056 'SIDE CHAIN' 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 A HOH 225 ? U HOH . 
2 1 B HOH 217 ? V HOH . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O N N 1  
A   P      P N N 2  
A   OP1    O N N 3  
A   OP2    O N N 4  
A   "O5'"  O N N 5  
A   "C5'"  C N N 6  
A   "C4'"  C N R 7  
A   "O4'"  O N N 8  
A   "C3'"  C N S 9  
A   "O3'"  O N N 10 
A   "C2'"  C N R 11 
A   "O2'"  O N N 12 
A   "C1'"  C N R 13 
A   N9     N Y N 14 
A   C8     C Y N 15 
A   N7     N Y N 16 
A   C5     C Y N 17 
A   C6     C Y N 18 
A   N6     N N N 19 
A   N1     N Y N 20 
A   C2     C Y N 21 
A   N3     N Y N 22 
A   C4     C Y N 23 
A   HOP3   H N N 24 
A   HOP2   H N N 25 
A   "H5'"  H N N 26 
A   "H5''" H N N 27 
A   "H4'"  H N N 28 
A   "H3'"  H N N 29 
A   "HO3'" H N N 30 
A   "H2'"  H N N 31 
A   "HO2'" H N N 32 
A   "H1'"  H N N 33 
A   H8     H N N 34 
A   H61    H N N 35 
A   H62    H N N 36 
A   H2     H N N 37 
HOH O      O N N 38 
HOH H1     H N N 39 
HOH H2     H N N 40 
NH4 N      N N N 41 
NH4 HN1    H N N 42 
NH4 HN2    H N N 43 
NH4 HN3    H N N 44 
NH4 HN4    H N N 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1  
A   OP3   HOP3   sing N N 2  
A   P     OP1    doub N N 3  
A   P     OP2    sing N N 4  
A   P     "O5'"  sing N N 5  
A   OP2   HOP2   sing N N 6  
A   "O5'" "C5'"  sing N N 7  
A   "C5'" "C4'"  sing N N 8  
A   "C5'" "H5'"  sing N N 9  
A   "C5'" "H5''" sing N N 10 
A   "C4'" "O4'"  sing N N 11 
A   "C4'" "C3'"  sing N N 12 
A   "C4'" "H4'"  sing N N 13 
A   "O4'" "C1'"  sing N N 14 
A   "C3'" "O3'"  sing N N 15 
A   "C3'" "C2'"  sing N N 16 
A   "C3'" "H3'"  sing N N 17 
A   "O3'" "HO3'" sing N N 18 
A   "C2'" "O2'"  sing N N 19 
A   "C2'" "C1'"  sing N N 20 
A   "C2'" "H2'"  sing N N 21 
A   "O2'" "HO2'" sing N N 22 
A   "C1'" N9     sing N N 23 
A   "C1'" "H1'"  sing N N 24 
A   N9    C8     sing Y N 25 
A   N9    C4     sing Y N 26 
A   C8    N7     doub Y N 27 
A   C8    H8     sing N N 28 
A   N7    C5     sing Y N 29 
A   C5    C6     sing Y N 30 
A   C5    C4     doub Y N 31 
A   C6    N6     sing N N 32 
A   C6    N1     doub Y N 33 
A   N6    H61    sing N N 34 
A   N6    H62    sing N N 35 
A   N1    C2     sing Y N 36 
A   C2    N3     doub Y N 37 
A   C2    H2     sing N N 38 
A   N3    C4     sing Y N 39 
HOH O     H1     sing N N 40 
HOH O     H2     sing N N 41 
NH4 N     HN1    sing N N 42 
NH4 N     HN2    sing N N 43 
NH4 N     HN3    sing N N 44 
NH4 N     HN4    sing N N 45 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
4JRD 'double helix'         
4JRD 'parallel strands'     
4JRD 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A A 2  1_555 B A 1  1_555 -6.182 5.025  -0.025 -13.408 4.781   -179.467 1  A_A2:A1_B   A 2  ? B 1  ? 2 8 
1 A A 3  1_555 B A 2  1_555 -6.071 5.012  -0.335 -10.282 3.293   -179.334 2  A_A3:A2_B   A 3  ? B 2  ? 2 8 
1 A A 4  1_555 B A 3  1_555 6.228  -4.982 0.020  5.218   -10.155 179.914  3  A_A4:A3_B   A 4  ? B 3  ? 2 8 
1 A A 5  1_555 B A 4  1_555 6.173  -5.037 0.102  2.843   -11.912 179.150  4  A_A5:A4_B   A 5  ? B 4  ? 2 8 
1 A A 6  1_555 B A 5  1_555 -6.191 5.006  0.080  -0.083  12.517  -179.982 5  A_A6:A5_B   A 6  ? B 5  ? 2 8 
1 A A 7  1_555 B A 6  1_555 -6.156 5.094  0.057  3.242   13.478  -176.770 6  A_A7:A6_B   A 7  ? B 6  ? 2 8 
1 A A 8  1_555 B A 7  1_555 -6.001 5.151  -0.025 0.631   14.220  -179.556 7  A_A8:A7_B   A 8  ? B 7  ? 2 8 
1 A A 9  1_555 B A 8  1_555 6.110  -5.056 -0.051 -2.264  -15.216 179.228  8  A_A9:A8_B   A 9  ? B 8  ? 2 8 
1 A A 10 1_555 B A 9  1_555 -6.191 4.996  -0.033 4.937   13.390  -179.243 9  A_A10:A9_B  A 10 ? B 9  ? 2 8 
1 A A 11 1_555 B A 10 1_555 -6.148 5.017  0.102  0.116   5.294   -178.911 10 A_A11:A10_B A 11 ? B 10 ? 2 8 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A A 2  1_555 B A 1 1_555 A A 3  1_555 B A 2  1_555 -0.079 -1.754 3.491 4.899  4.432  33.016   -3.776 0.961  3.191 7.702  -8.514 
33.652   1 AA_A2A3:A2A1_BB    A 2  ? B 1 ? A 3  ? B 2  ? 
1 A A 3  1_555 B A 2 1_555 A A 4  1_555 B A 3  1_555 0.025  -0.462 3.817 0.081  -3.624 -138.966 0.271  0.014  3.812 1.934  0.043  
-138.988 2 AA_A3A4:A3A2_BB    A 3  ? B 2 ? A 4  ? B 3  ? 
1 A A 4  1_555 B A 3 1_555 A A 5  1_555 B A 4  1_555 0.165  -0.403 3.750 0.341  1.511  41.576   -0.751 -0.191 3.735 2.128  -0.480 
41.604   3 AA_A4A5:A4A3_BB    A 4  ? B 3 ? A 5  ? B 4  ? 
1 A A 5  1_555 B A 4 1_555 A A 6  1_555 B A 5  1_555 0.287  -0.515 3.780 -1.113 1.330  -136.301 0.268  0.146  3.783 -0.716 -0.599 
-136.306 4 AA_A5A6:A5A4_BB    A 5  ? B 4 ? A 6  ? B 5  ? 
1 A A 6  1_555 B A 5 1_555 A A 7  1_555 B A 6  1_555 0.238  -0.441 3.764 -0.199 0.191  41.128   -0.651 -0.364 3.761 0.271  0.283  
41.129   5 AA_A6A7:A6A5_BB    A 6  ? B 5 ? A 7  ? B 6  ? 
1 A A 7  1_555 B A 6 1_555 A A 8  1_555 B A 7  1_555 -0.151 0.078  3.811 1.084  0.742  45.108   0.025  0.310  3.807 0.967  -1.413 
45.127   6 AA_A7A8:A7A6_BB    A 7  ? B 6 ? A 8  ? B 7  ? 
1 A A 8  1_555 B A 7 1_555 A A 9  1_555 B A 8  1_555 -0.224 -0.024 3.827 0.426  -0.264 -139.076 0.014  -0.117 3.828 0.141  0.227  
-139.077 7 AA_A8A9:A8A7_BB    A 8  ? B 7 ? A 9  ? B 8  ? 
1 A A 9  1_555 B A 8 1_555 A A 10 1_555 B A 9  1_555 -0.362 0.231  3.778 0.234  0.693  -138.296 -0.128 -0.192 3.778 -0.371 0.125  
-138.297 8 AA_A9A10:A9A8_BB   A 9  ? B 8 ? A 10 ? B 9  ? 
1 A A 10 1_555 B A 9 1_555 A A 11 1_555 B A 10 1_555 -0.134 -0.036 3.563 -0.878 -1.142 40.050   0.089  0.086  3.565 -1.667 1.282  
40.074   9 AA_A10A11:A10A9_BB A 10 ? B 9 ? A 11 ? B 10 ? 
# 
_atom_sites.entry_id                    4JRD 
_atom_sites.fract_transf_matrix[1][1]   0.043860 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.043860 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.006109 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_