HEADER CELL ADHESION 21-MAR-13 4JRF TITLE CRYSTAL STRUCTURE OF A PUTATIVE CELL ADHESION PROTEIN (BACOVA_01548) TITLE 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 1.98 A RESOLUTION (PSI COMMUNITY TITLE 3 TARGET, NAKAYAMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CELL ADHESION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: ZP_02064579.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FIMBRIAE LIKE PROTEIN, PF08842 FAMILY, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4JRF 1 REMARK SEQADV LINK REVDAT 4 22-APR-20 4JRF 1 JRNL LINK REVDAT 3 24-JAN-18 4JRF 1 JRNL REVDAT 2 15-NOV-17 4JRF 1 REMARK REVDAT 1 03-APR-13 4JRF 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2909 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1984 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2764 REMARK 3 BIN R VALUE (WORKING SET) : 0.1965 REMARK 3 BIN FREE R VALUE : 0.2346 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76950 REMARK 3 B22 (A**2) : 0.76950 REMARK 3 B33 (A**2) : -1.53890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.209 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3738 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5097 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1684 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 542 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3738 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 512 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4473 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|36 - 520} REMARK 3 ORIGIN FOR THE GROUP (A): 21.9208 20.4479 23.1470 REMARK 3 T TENSOR REMARK 3 T11: -0.0775 T22: -0.0822 REMARK 3 T33: -0.0245 T12: -0.0072 REMARK 3 T13: -0.0258 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.3816 L22: 1.3826 REMARK 3 L33: 0.6520 L12: -0.2958 REMARK 3 L13: -0.3050 L23: 0.5013 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.0392 S13: -0.0709 REMARK 3 S21: -0.0805 S22: -0.0100 S23: 0.0837 REMARK 3 S31: 0.0506 S32: -0.0488 S33: 0.0592 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. PEG, CL AND SO4 MODELED ARE PRESENT IN PROTEIN/CRYO REMARK 3 CONDITIONS. 4. CALCIUM WAS MODELED BASED ON ELECTRON DENSITY FIT, REMARK 3 COORDINATION GEOMETRY AND A PEAK IN THE ANOMALOUS DIFFERENCE REMARK 3 FOURIER MAP. 5. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. REMARK 4 REMARK 4 4JRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979029,0.979338,0.953725 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 47.384 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 30.0% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M TRIS HYDROCHLORIDE PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.01100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.01100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.01100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.01100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 67.01100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.01100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 67.01100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 67.01100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -525.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 18 REMARK 465 CYS A 19 REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 ASP A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 MSE A 25 REMARK 465 ALA A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 ASN A 31 REMARK 465 GLN A 32 REMARK 465 LEU A 33 REMARK 465 PRO A 34 REMARK 465 VAL A 35 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 ARG A 55 REMARK 465 ALA A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 521 REMARK 465 VAL A 522 REMARK 465 ASP A 523 REMARK 465 LEU A 524 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 GLN A 520 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 137 -15.16 86.33 REMARK 500 ASN A 166 125.50 -35.58 REMARK 500 THR A 189 -91.61 -91.18 REMARK 500 SER A 334 -14.77 83.53 REMARK 500 HIS A 447 -80.27 -105.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 614 REMARK 610 PG4 A 616 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 269 OD2 REMARK 620 2 ASP A 269 OD1 49.2 REMARK 620 3 ASN A 271 O 123.7 75.2 REMARK 620 4 ASN A 271 OD1 82.4 78.2 77.9 REMARK 620 5 ASN A 309 OD1 82.3 131.4 151.7 96.8 REMARK 620 6 THR A 310 O 82.7 78.5 95.9 156.8 98.7 REMARK 620 7 HOH A 704 O 158.1 151.5 78.1 105.9 76.7 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 617 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417041 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (18-524) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4JRF A 18 524 UNP A7LUP9 A7LUP9_BACOV 18 524 SEQADV 4JRF GLY A 0 UNP A7LUP9 EXPRESSION TAG SEQRES 1 A 508 GLY ALA CYS SER ASN ASP GLU GLU MSE ALA THR GLY GLY SEQRES 2 A 508 GLN ASN GLN LEU PRO VAL ASP GLY ARG GLU ALA TYR MSE SEQRES 3 A 508 SER VAL SER VAL ALA MSE PRO LYS SER THR GLY THR ARG SEQRES 4 A 508 ALA LEU GLY GLU HIS HIS GLY THR ALA ASP GLU GLN ASN SEQRES 5 A 508 VAL LYS GLU VAL LEU LEU ALA LEU PHE ASP ALA SER ASP SEQRES 6 A 508 VAL CYS LEU GLU THR LYS THR LEU ALA THR THR ASP TYR SEQRES 7 A 508 ILE LEU ASN VAL GLY GLY ALA ASN LYS ALA GLY TYR ASP SEQRES 8 A 508 GLY LYS ALA PHE LYS VAL PRO SER ALA THR ALA LYS VAL SEQRES 9 A 508 LEU ALA VAL VAL ASN PRO SER ASP LYS PHE LYS THR ALA SEQRES 10 A 508 CYS VAL ALA SER ALA SER TRP SER ALA ILE ASN GLY ALA SEQRES 11 A 508 VAL GLU GLN THR LEU ASP GLU VAL THR GLY THR SER LYS SEQRES 12 A 508 ASN ASN PHE MSE MSE ILE ASN ALA GLY ASP ASN ALA ASN SEQRES 13 A 508 PRO THR ASN GLY ALA LEU VAL THR ALA ASN VAL LYS VAL SEQRES 14 A 508 VAL ASP GLY THR THR ILE PRO ASP VAL ALA THR ALA ILE SEQRES 15 A 508 SER GLU ALA GLN ALA ASP ARG SER MSE ILE TYR VAL ASP SEQRES 16 A 508 ARG VAL VAL ALA LYS VAL SER LEU GLY THR ASN PRO ASP SEQRES 17 A 508 GLY LEU LYS VAL PRO ALA GLY VAL THR CYS THR PHE GLY SEQRES 18 A 508 ASP TRP ALA LEU ASN ILE THR ASN LYS SER MSE PHE PRO SEQRES 19 A 508 TYR SER GLU ILE VAL MSE PRO ALA GLY GLY SER THR GLY SEQRES 20 A 508 ALA ASP TYR ARG ILE ASP PRO ASN TYR GLU LEU ALA GLY SEQRES 21 A 508 PHE ASP VAL SER GLN PHE ASN TYR LEU LYS VAL ALA ASP SEQRES 22 A 508 ASP GLY THR LEU PRO ALA ASP PHE SER ALA MSE ALA ASP SEQRES 23 A 508 SER LYS TYR CYS LEU GLU ASN THR MSE ALA ALA ASP ALA SEQRES 24 A 508 GLN THR GLN ALA GLN THR THR SER ALA VAL ALA SER ALA SEQRES 25 A 508 VAL TYR THR PRO GLY SER PHE THR VAL GLY GLU SER TRP SEQRES 26 A 508 PHE ARG LEU LEU GLY VAL THR TYR LYS THR LEU ALA ASP SEQRES 27 A 508 LEU GLN VAL VAL TYR ASN ALA ALA LYS ALA ALA GLY THR SEQRES 28 A 508 ALA ASP ALA ALA GLN THR GLN VAL ILE THR LEU CYS ASP SEQRES 29 A 508 GLN PHE TYR ALA ARG ILE ALA LYS ALA ALA THR ALA GLN SEQRES 30 A 508 GLY LYS ALA VAL GLY ALA ASP PHE ALA SER ILE THR ILE SEQRES 31 A 508 THR GLU LEU ASP ASP LEU LYS SER GLY GLY GLU TYR SER SEQRES 32 A 508 LYS PRO ASP ALA ALA ALA GLY GLU THR VAL GLY VAL GLU SEQRES 33 A 508 TYR PHE GLN LYS GLY VAL CYS TYR TYR ASN ILE LEU ILE SEQRES 34 A 508 HIS HIS ASP ASP ALA ILE THR ALA THR MSE ALA HIS GLY SEQRES 35 A 508 LYS TYR GLY VAL VAL ARG ASN ASN TRP TYR THR LEU THR SEQRES 36 A 508 ILE ASN SER VAL LYS GLN PRO GLY THR PRO TRP LEU PRO SEQRES 37 A 508 ASP THR THR ASN PRO THR ASP PRO LYS ASP PRO GLY GLU SEQRES 38 A 508 ASP ASP ASP ASP LYS GLU ALA TYR LEU SER VAL GLU ILE SEQRES 39 A 508 THR VAL ASN PRO TRP THR THR TRP SER GLN GLY VAL ASP SEQRES 40 A 508 LEU MODRES 4JRF MSE A 42 MET SELENOMETHIONINE MODRES 4JRF MSE A 48 MET SELENOMETHIONINE MODRES 4JRF MSE A 163 MET SELENOMETHIONINE MODRES 4JRF MSE A 164 MET SELENOMETHIONINE MODRES 4JRF MSE A 207 MET SELENOMETHIONINE MODRES 4JRF MSE A 248 MET SELENOMETHIONINE MODRES 4JRF MSE A 256 MET SELENOMETHIONINE MODRES 4JRF MSE A 300 MET SELENOMETHIONINE MODRES 4JRF MSE A 311 MET SELENOMETHIONINE MODRES 4JRF MSE A 455 MET SELENOMETHIONINE HET MSE A 42 8 HET MSE A 48 8 HET MSE A 163 8 HET MSE A 164 8 HET MSE A 207 13 HET MSE A 248 8 HET MSE A 256 13 HET MSE A 300 8 HET MSE A 311 8 HET MSE A 455 8 HET CA A 601 1 HET CL A 602 1 HET CL A 603 2 HET CL A 604 1 HET CL A 605 1 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HET SO4 A 613 5 HET PG4 A 614 10 HET PG4 A 615 13 HET PG4 A 616 10 HET PG4 A 617 13 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 CL 4(CL 1-) FORMUL 7 SO4 8(O4 S 2-) FORMUL 15 PG4 4(C8 H18 O5) FORMUL 19 HOH *357(H2 O) HELIX 1 1 ALA A 64 ASN A 68 5 5 HELIX 2 2 ALA A 90 TYR A 94 5 5 HELIX 3 3 SER A 127 CYS A 134 1 8 HELIX 4 4 SER A 139 ASN A 144 1 6 HELIX 5 5 THR A 150 GLY A 156 1 7 HELIX 6 6 ASN A 172 GLY A 176 5 5 HELIX 7 7 ASP A 193 ALA A 203 1 11 HELIX 8 8 GLU A 273 PHE A 277 5 5 HELIX 9 9 ASP A 278 SER A 280 5 3 HELIX 10 10 ALA A 312 GLN A 316 5 5 HELIX 11 11 THR A 351 ALA A 365 1 15 HELIX 12 12 ASP A 369 GLY A 394 1 26 HELIX 13 13 ASP A 400 ILE A 404 5 5 HELIX 14 14 THR A 405 ASP A 411 1 7 HELIX 15 15 SER A 414 LYS A 420 5 7 HELIX 16 16 ASP A 422 GLY A 426 5 5 HELIX 17 17 ASP A 498 LYS A 502 5 5 SHEET 1 A 3 PHE A 111 LYS A 112 0 SHEET 2 A 3 ALA A 40 MSE A 42 -1 N MSE A 42 O PHE A 111 SHEET 3 A 3 LYS A 184 VAL A 185 -1 O LYS A 184 N TYR A 41 SHEET 1 B 8 CYS A 83 THR A 88 0 SHEET 2 B 8 VAL A 72 PHE A 77 -1 N LEU A 76 O LEU A 84 SHEET 3 B 8 LYS A 119 VAL A 124 -1 O VAL A 123 N LEU A 73 SHEET 4 B 8 MSE A 164 ASN A 166 -1 O MSE A 164 N VAL A 124 SHEET 5 B 8 SER A 206 ARG A 212 -1 O ASP A 211 N ILE A 165 SHEET 6 B 8 VAL A 44 ALA A 47 1 N SER A 45 O ILE A 208 SHEET 7 B 8 ILE A 95 VAL A 98 1 O ILE A 95 N VAL A 46 SHEET 8 B 8 ALA A 101 ASN A 102 -1 O ALA A 101 N VAL A 98 SHEET 1 C 4 CYS A 83 THR A 88 0 SHEET 2 C 4 VAL A 72 PHE A 77 -1 N LEU A 76 O LEU A 84 SHEET 3 C 4 LYS A 119 VAL A 124 -1 O VAL A 123 N LEU A 73 SHEET 4 C 4 VAL A 179 THR A 180 -1 O VAL A 179 N VAL A 120 SHEET 1 D 2 VAL A 147 GLU A 148 0 SHEET 2 D 2 SER A 247 MSE A 248 -1 O MSE A 248 N VAL A 147 SHEET 1 E 4 LYS A 304 LEU A 307 0 SHEET 2 E 4 VAL A 214 THR A 221 -1 N VAL A 217 O LYS A 304 SHEET 3 E 4 ASN A 466 VAL A 475 1 O TYR A 468 N LYS A 216 SHEET 4 E 4 LEU A 506 PRO A 514 -1 O ASN A 513 N TRP A 467 SHEET 1 F 3 THR A 233 ASN A 242 0 SHEET 2 F 3 SER A 323 THR A 331 -1 O VAL A 325 N ALA A 240 SHEET 3 F 3 VAL A 438 LEU A 444 -1 O ILE A 443 N ALA A 324 SHEET 1 G 2 THR A 244 ASN A 245 0 SHEET 2 G 2 PHE A 282 ASN A 283 -1 O ASN A 283 N THR A 244 SHEET 1 H 2 GLU A 253 VAL A 255 0 SHEET 2 H 2 TYR A 266 ILE A 268 -1 O TYR A 266 N VAL A 255 SHEET 1 I 3 VAL A 347 TYR A 349 0 SHEET 2 I 3 TRP A 341 LEU A 344 -1 N PHE A 342 O TYR A 349 SHEET 3 I 3 GLU A 432 PHE A 434 -1 O GLU A 432 N ARG A 343 LINK C TYR A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N SER A 43 1555 1555 1.33 LINK C ALA A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N PRO A 49 1555 1555 1.36 LINK C PHE A 162 N MSE A 163 1555 1555 1.35 LINK C MSE A 163 N MSE A 164 1555 1555 1.34 LINK C MSE A 164 N ILE A 165 1555 1555 1.34 LINK C SER A 206 N MSE A 207 1555 1555 1.34 LINK C MSE A 207 N ILE A 208 1555 1555 1.33 LINK C SER A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N PHE A 249 1555 1555 1.30 LINK C VAL A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N PRO A 257 1555 1555 1.36 LINK C ALA A 299 N MSE A 300 1555 1555 1.34 LINK C MSE A 300 N ALA A 301 1555 1555 1.34 LINK C THR A 310 N MSE A 311 1555 1555 1.32 LINK C MSE A 311 N ALA A 312 1555 1555 1.36 LINK C THR A 454 N MSE A 455 1555 1555 1.34 LINK C MSE A 455 N ALA A 456 1555 1555 1.35 LINK OD2 ASP A 269 CA CA A 601 1555 1555 2.37 LINK OD1 ASP A 269 CA CA A 601 1555 1555 2.77 LINK O ASN A 271 CA CA A 601 1555 1555 2.33 LINK OD1 ASN A 271 CA CA A 601 1555 1555 2.37 LINK OD1 ASN A 309 CA CA A 601 1555 1555 2.37 LINK O THR A 310 CA CA A 601 1555 1555 2.34 LINK CA CA A 601 O HOH A 704 1555 1555 2.38 SITE 1 AC1 5 ASP A 269 ASN A 271 ASN A 309 THR A 310 SITE 2 AC1 5 HOH A 704 SITE 1 AC2 1 ASP A 289 SITE 1 AC3 3 GLY A 145 ALA A 146 HOH A 783 SITE 1 AC4 3 LYS A 304 TYR A 305 HOH A 815 SITE 1 AC5 1 ARG A 205 SITE 1 AC6 9 LYS A 70 GLY A 156 THR A 157 ASN A 161 SITE 2 AC6 9 HOH A 762 HOH A 827 HOH A 882 HOH A 921 SITE 3 AC6 9 HOH A1012 SITE 1 AC7 6 LYS A 50 THR A 63 GLU A 66 LYS A 216 SITE 2 AC7 6 SER A 303 TRP A 467 SITE 1 AC8 5 PHE A 111 LYS A 112 PRO A 229 ALA A 230 SITE 2 AC8 5 HOH A 895 SITE 1 AC9 5 LYS A 129 ASN A 488 THR A 490 HOH A 881 SITE 2 AC9 5 HOH A1029 SITE 1 BC1 2 ALA A 90 THR A 91 SITE 1 BC2 9 ASN A 442 LYS A 502 GLU A 503 ALA A 504 SITE 2 BC2 9 TYR A 505 LEU A 506 HOH A 721 HOH A 946 SITE 3 BC2 9 HOH A 951 SITE 1 BC3 3 THR A 86 LYS A 87 THR A 88 SITE 1 BC4 4 HIS A 446 LYS A 459 PG4 A 617 HOH A1054 SITE 1 BC5 4 TYR A 284 LYS A 286 ASP A 485 THR A 487 SITE 1 BC6 11 ILE A 95 ASN A 102 LYS A 103 TYR A 106 SITE 2 BC6 11 ASP A 107 SER A 158 ASN A 160 GLN A 202 SITE 3 BC6 11 ARG A 205 HOH A 903 HOH A 986 SITE 1 BC7 5 ASP A 289 ARG A 385 LYS A 388 ALA A 389 SITE 2 BC7 5 TYR A 418 SITE 1 BC8 8 HIS A 446 LYS A 476 SER A 507 VAL A 508 SITE 2 BC8 8 GLU A 509 ILE A 510 SO4 A 613 HOH A 946 CRYST1 134.022 134.022 57.730 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017322 0.00000