HEADER LIGASE/LIGASE INHIBITOR 21-MAR-13 4JRG TITLE THE 1.9A CRYSTAL STRUCTURE OF HUMANIZED XENOPUS MDM2 WITH RO5313109 - TITLE 2 A PYRROLIDINE MDM2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 21-105); COMPND 5 SYNONYM: DOUBLE MINUTE 2 PROTEIN, XDM2, P53-BINDING PROTEIN MDM2; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUBS 520 KEYWDS PROTEIN-INHIBITOR COMPLEX, PYRROLIDINE, E3 UBIQUITIN LIGASE, P53, KEYWDS 2 NUCLEUS, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.GRAVES,C.A.JANSON,C.LUKACS REVDAT 3 28-FEB-24 4JRG 1 REMARK SEQADV REVDAT 2 05-FEB-14 4JRG 1 JRNL REVDAT 1 24-JUL-13 4JRG 0 JRNL AUTH Q.DING,Z.ZHANG,J.J.LIU,N.JIANG,J.ZHANG,T.M.ROSS,X.J.CHU, JRNL AUTH 2 D.BARTKOVITZ,F.PODLASKI,C.JANSON,C.TOVAR,Z.M.FILIPOVIC, JRNL AUTH 3 B.HIGGINS,K.GLENN,K.PACKMAN,L.T.VASSILEV,B.GRAVES JRNL TITL DISCOVERY OF RG7388, A POTENT AND SELECTIVE P53-MDM2 JRNL TITL 2 INHIBITOR IN CLINICAL DEVELOPMENT. JRNL REF J.MED.CHEM. V. 56 5979 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23808545 JRNL DOI 10.1021/JM400487C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.TOVAR,B.GRAVES,K.PACKMAN,Z.FILIPOVIC,B.HIGGINS,M.XIA, REMARK 1 AUTH 2 C.TARDELL,R.GARRIDO,E.LEE,K.KOLINSKY,K.H.TO,M.LINN, REMARK 1 AUTH 3 F.PODLASKI,P.WOVKULICH,B.VU,L.T.VASSILEV REMARK 1 TITL MDM2 SMALL-MOLECULE ANTAGONIST RG7112 ACTIVATES P53 REMARK 1 TITL 2 SIGNALING AND REGRESSES HUMAN TUMORS IN PRECLINICAL CANCER REMARK 1 TITL 3 MODELS. REMARK 1 REF CANCER RES. 2013 REMARK 1 REFN ESSN 1538-7445 REMARK 1 PMID 23400593 REMARK 1 DOI 10.1158/0008-5472.CAN-12-2807 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2005 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 957499.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 16827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2980 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2970 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.328 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : 0.0110 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 16827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2587 REMARK 3 BIN R VALUE (WORKING SET) : 0.4350 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1366 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.13000 REMARK 3 B22 (A**2) : -9.55000 REMARK 3 B33 (A**2) : -6.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.680 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.84 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARA REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : RO5313109-A.PRX REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : RO5313109-A.TPX REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 0.1M REMARK 280 BIS-TRIS, PH 6.0, 5% PEG 550MME, 5 MM DTT, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.77100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.39800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.77100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.39800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FULL-LENGTH PROTEIN IS A DIMER, FORMED BY CONTACTS IN THE C- REMARK 300 TERMINAL DOMAIN BUT THE N-TERMINAL DOMAIN ON ITS OWN IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 105 REMARK 465 SER B 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 73 20.51 -142.23 REMARK 500 LYS B 41 -169.92 -128.50 REMARK 500 CYS B 73 25.30 -142.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I09 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I09 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IPF RELATED DB: PDB REMARK 900 SAME PROTEIN WITH RG7112, A NUTLIN IN CLINICAL DEVELOPMENT DBREF 4JRG A 21 105 UNP P56273 MDM2_XENLA 21 105 DBREF 4JRG B 21 105 UNP P56273 MDM2_XENLA 21 105 SEQADV 4JRG LEU A 50 UNP P56273 ILE 50 ENGINEERED MUTATION SEQADV 4JRG HIS A 92 UNP P56273 PRO 92 ENGINEERED MUTATION SEQADV 4JRG ILE A 95 UNP P56273 LEU 95 ENGINEERED MUTATION SEQADV 4JRG LEU B 50 UNP P56273 ILE 50 ENGINEERED MUTATION SEQADV 4JRG HIS B 92 UNP P56273 PRO 92 ENGINEERED MUTATION SEQADV 4JRG ILE B 95 UNP P56273 LEU 95 ENGINEERED MUTATION SEQRES 1 A 85 GLU LYS LEU VAL GLN PRO THR PRO LEU LEU LEU SER LEU SEQRES 2 A 85 LEU LYS SER ALA GLY ALA GLN LYS GLU THR PHE THR MET SEQRES 3 A 85 LYS GLU VAL LEU TYR HIS LEU GLY GLN TYR ILE MET ALA SEQRES 4 A 85 LYS GLN LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL HIS SEQRES 5 A 85 CYS SER ASN ASP PRO LEU GLY GLU LEU PHE GLY VAL GLN SEQRES 6 A 85 GLU PHE SER VAL LYS GLU HIS ARG ARG ILE TYR ALA MET SEQRES 7 A 85 ILE SER ARG ASN LEU VAL SER SEQRES 1 B 85 GLU LYS LEU VAL GLN PRO THR PRO LEU LEU LEU SER LEU SEQRES 2 B 85 LEU LYS SER ALA GLY ALA GLN LYS GLU THR PHE THR MET SEQRES 3 B 85 LYS GLU VAL LEU TYR HIS LEU GLY GLN TYR ILE MET ALA SEQRES 4 B 85 LYS GLN LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL HIS SEQRES 5 B 85 CYS SER ASN ASP PRO LEU GLY GLU LEU PHE GLY VAL GLN SEQRES 6 B 85 GLU PHE SER VAL LYS GLU HIS ARG ARG ILE TYR ALA MET SEQRES 7 B 85 ILE SER ARG ASN LEU VAL SER HET I09 A 201 35 HET I09 B 201 35 HETNAM I09 (3R,4R,5S)-3-(3-CHLOROPHENYL)-4-(4-CHLOROPHENYL)-4- HETNAM 2 I09 CYANO-N-[(3S)-3,4-DIHYDROXYBUTYL]-5-(2,2- HETNAM 3 I09 DIMETHYLPROPYL)-D-PROLINAMIDE FORMUL 3 I09 2(C27 H33 CL2 N3 O3) FORMUL 5 HOH *128(H2 O) HELIX 1 1 THR A 27 ALA A 37 1 11 HELIX 2 2 THR A 45 GLN A 61 1 17 HELIX 3 3 ASP A 76 GLY A 83 1 8 HELIX 4 4 GLU A 91 ARG A 101 1 11 HELIX 5 5 THR B 27 ALA B 37 1 11 HELIX 6 6 THR B 45 LYS B 60 1 16 HELIX 7 7 ASP B 76 GLY B 83 1 8 HELIX 8 8 GLU B 91 ARG B 101 1 11 SHEET 1 A 2 GLN A 25 PRO A 26 0 SHEET 2 A 2 LEU A 103 VAL A 104 -1 O VAL A 104 N GLN A 25 SHEET 1 B 2 ILE A 70 HIS A 72 0 SHEET 2 B 2 GLU A 86 SER A 88 -1 O PHE A 87 N VAL A 71 SHEET 1 C 2 ILE B 70 HIS B 72 0 SHEET 2 C 2 GLU B 86 SER B 88 -1 O PHE B 87 N VAL B 71 SITE 1 AC1 12 LEU A 50 ILE A 57 MET A 58 HIS A 69 SITE 2 AC1 12 PHE A 82 VAL A 89 LYS A 90 HIS A 92 SITE 3 AC1 12 ILE A 95 TYR A 96 HOH A 331 HOH A 332 SITE 1 AC2 9 LEU B 50 GLY B 54 MET B 58 HIS B 69 SITE 2 AC2 9 VAL B 89 LYS B 90 HIS B 92 HOH B 325 SITE 3 AC2 9 HOH B 326 CRYST1 73.542 72.796 43.865 90.00 111.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013598 0.000000 0.005434 0.00000 SCALE2 0.000000 0.013737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024550 0.00000 TER 694 VAL A 104 TER 1388 VAL B 104 HETATM 1389 C1 I09 A 201 11.781 10.738 -1.043 1.00 33.12 C HETATM 1390 C10 I09 A 201 12.414 11.957 -0.431 1.00 35.14 C HETATM 1391 N11 I09 A 201 11.556 12.817 0.220 1.00 36.28 N HETATM 1392 C12 I09 A 201 12.033 14.023 0.890 1.00 45.00 C HETATM 1393 C13 I09 A 201 12.241 15.149 -0.123 1.00 52.06 C HETATM 1394 C14 I09 A 201 12.646 16.423 0.616 1.00 56.12 C HETATM 1395 O14 I09 A 201 11.500 17.054 1.182 1.00 59.31 O HETATM 1396 C15 I09 A 201 13.403 17.385 -0.310 1.00 56.96 C HETATM 1397 O15 I09 A 201 12.564 17.825 -1.369 1.00 59.93 O HETATM 1398 O10 I09 A 201 13.634 12.192 -0.479 1.00 30.53 O HETATM 1399 N1 I09 A 201 10.350 10.632 -0.589 1.00 33.80 N HETATM 1400 C2 I09 A 201 12.467 9.466 -0.549 1.00 32.43 C HETATM 1401 C21 I09 A 201 13.595 9.007 -1.435 1.00 30.66 C HETATM 1402 C26 I09 A 201 13.601 9.292 -2.802 1.00 29.30 C HETATM 1403 C25 I09 A 201 14.641 8.817 -3.613 1.00 31.33 C HETATM 1404 C22 I09 A 201 14.630 8.269 -0.877 1.00 30.95 C HETATM 1405 C23 I09 A 201 15.669 7.801 -1.685 1.00 32.21 C HETATM 1406 CL2 I09 A 201 16.985 6.894 -0.955 1.00 31.95 CL HETATM 1407 C24 I09 A 201 15.678 8.063 -3.063 1.00 30.00 C HETATM 1408 C3 I09 A 201 11.330 8.456 -0.438 1.00 33.01 C HETATM 1409 C37 I09 A 201 10.965 7.977 -1.780 1.00 33.46 C HETATM 1410 N37 I09 A 201 10.689 7.604 -2.820 1.00 30.61 N HETATM 1411 C31 I09 A 201 11.662 7.293 0.469 1.00 34.73 C HETATM 1412 C32 I09 A 201 12.218 7.516 1.745 1.00 33.81 C HETATM 1413 C33 I09 A 201 12.538 6.429 2.561 1.00 34.60 C HETATM 1414 C36 I09 A 201 11.426 5.988 0.024 1.00 33.78 C HETATM 1415 C35 I09 A 201 11.742 4.901 0.841 1.00 35.58 C HETATM 1416 C34 I09 A 201 12.299 5.122 2.104 1.00 35.43 C HETATM 1417 CL3 I09 A 201 12.718 3.745 3.119 1.00 42.55 CL HETATM 1418 C4 I09 A 201 10.187 9.303 0.095 1.00 33.05 C HETATM 1419 C41 I09 A 201 8.816 8.670 -0.208 1.00 32.79 C HETATM 1420 C42 I09 A 201 7.720 9.186 0.758 1.00 35.51 C HETATM 1421 C45 I09 A 201 7.803 10.724 0.897 1.00 36.02 C HETATM 1422 C44 I09 A 201 7.901 8.544 2.142 1.00 32.65 C HETATM 1423 C43 I09 A 201 6.336 8.796 0.210 1.00 33.24 C HETATM 1424 C1 I09 B 201 4.256 -30.137 16.399 1.00 34.59 C HETATM 1425 C10 I09 B 201 5.151 -31.344 16.405 1.00 36.13 C HETATM 1426 N11 I09 B 201 4.966 -32.234 15.369 1.00 35.30 N HETATM 1427 C12 I09 B 201 5.731 -33.478 15.277 1.00 41.62 C HETATM 1428 C13 I09 B 201 5.185 -34.504 16.276 1.00 47.44 C HETATM 1429 C14 I09 B 201 5.937 -35.829 16.124 1.00 51.67 C HETATM 1430 O14 I09 B 201 5.706 -36.376 14.829 1.00 54.98 O HETATM 1431 C15 I09 B 201 5.502 -36.820 17.209 1.00 52.85 C HETATM 1432 O15 I09 B 201 4.092 -37.047 17.143 1.00 54.18 O HETATM 1433 O10 I09 B 201 6.006 -31.557 17.285 1.00 32.65 O HETATM 1434 N1 I09 B 201 3.564 -30.026 15.069 1.00 34.65 N HETATM 1435 C2 I09 B 201 5.072 -28.851 16.542 1.00 34.50 C HETATM 1436 C21 I09 B 201 5.282 -28.416 17.964 1.00 32.40 C HETATM 1437 C26 I09 B 201 4.347 -28.708 18.954 1.00 31.18 C HETATM 1438 C25 I09 B 201 4.559 -28.265 20.267 1.00 31.85 C HETATM 1439 C22 I09 B 201 6.432 -27.713 18.276 1.00 30.24 C HETATM 1440 C23 I09 B 201 6.647 -27.282 19.577 1.00 33.11 C HETATM 1441 CL2 I09 B 201 8.130 -26.432 19.951 1.00 31.02 CL HETATM 1442 C24 I09 B 201 5.708 -27.540 20.582 1.00 31.09 C HETATM 1443 C3 I09 B 201 4.315 -27.844 15.718 1.00 34.10 C HETATM 1444 C37 I09 B 201 3.111 -27.365 16.406 1.00 34.35 C HETATM 1445 N37 I09 B 201 2.165 -26.987 16.936 1.00 33.34 N HETATM 1446 C31 I09 B 201 5.154 -26.670 15.309 1.00 35.45 C HETATM 1447 C32 I09 B 201 6.394 -26.864 14.699 1.00 36.42 C HETATM 1448 C33 I09 B 201 7.155 -25.770 14.322 1.00 36.72 C HETATM 1449 C36 I09 B 201 4.683 -25.377 15.547 1.00 36.80 C HETATM 1450 C35 I09 B 201 5.437 -24.278 15.177 1.00 36.48 C HETATM 1451 C34 I09 B 201 6.672 -24.480 14.562 1.00 37.49 C HETATM 1452 CL3 I09 B 201 7.627 -23.104 14.084 1.00 42.43 CL HETATM 1453 C4 I09 B 201 3.862 -28.670 14.516 1.00 33.91 C HETATM 1454 C41 I09 B 201 2.623 -28.059 13.847 1.00 35.83 C HETATM 1455 C42 I09 B 201 2.428 -28.611 12.423 1.00 36.68 C HETATM 1456 C45 I09 B 201 2.325 -30.144 12.452 1.00 36.78 C HETATM 1457 C44 I09 B 201 3.617 -28.204 11.549 1.00 36.95 C HETATM 1458 C43 I09 B 201 1.136 -28.020 11.838 1.00 35.85 C HETATM 1459 O HOH A 301 10.019 4.710 16.778 1.00 23.81 O HETATM 1460 O HOH A 302 22.380 9.700 4.297 1.00 28.60 O HETATM 1461 O HOH A 303 15.689 7.213 17.192 1.00 37.41 O HETATM 1462 O HOH A 304 17.756 4.876 15.441 1.00 32.16 O HETATM 1463 O HOH A 305 16.597 2.200 -10.200 1.00 34.13 O HETATM 1464 O HOH A 306 5.148 13.037 16.916 1.00 33.44 O HETATM 1465 O HOH A 307 17.839 13.980 0.125 1.00 30.77 O HETATM 1466 O HOH A 308 6.949 2.418 15.399 1.00 34.70 O HETATM 1467 O HOH A 309 20.705 1.733 -11.655 1.00 51.79 O HETATM 1468 O HOH A 310 8.732 -13.105 1.123 1.00 35.54 O HETATM 1469 O HOH A 311 16.997 6.626 -6.445 1.00 40.63 O HETATM 1470 O HOH A 312 1.423 1.566 11.774 1.00 42.12 O HETATM 1471 O HOH A 313 3.164 -9.464 2.366 1.00 39.69 O HETATM 1472 O HOH A 314 6.396 6.236 -2.681 1.00 35.36 O HETATM 1473 O HOH A 315 12.723 -0.765 19.366 1.00 49.35 O HETATM 1474 O HOH A 316 27.459 4.779 0.985 1.00 41.48 O HETATM 1475 O HOH A 317 22.901 2.419 7.619 1.00 52.58 O HETATM 1476 O HOH A 318 4.944 -4.783 -9.089 1.00 44.66 O HETATM 1477 O HOH A 319 7.117 -3.095 -8.771 1.00 36.67 O HETATM 1478 O HOH A 320 2.622 -2.431 12.474 1.00 50.98 O HETATM 1479 O HOH A 321 13.095 -11.265 -3.989 1.00 37.25 O HETATM 1480 O HOH A 322 5.242 -11.108 -11.373 1.00 49.16 O HETATM 1481 O HOH A 323 1.013 -6.731 -3.782 1.00 48.44 O HETATM 1482 O HOH A 324 14.331 16.970 12.534 1.00 43.70 O HETATM 1483 O HOH A 325 19.863 -8.061 -5.072 1.00 41.69 O HETATM 1484 O HOH A 326 14.272 9.123 -10.955 1.00 59.95 O HETATM 1485 O HOH A 327 3.732 0.084 12.307 1.00 36.70 O HETATM 1486 O HOH A 328 12.067 -2.757 16.426 1.00 49.88 O HETATM 1487 O HOH A 329 -0.922 -9.504 -7.878 1.00 36.75 O HETATM 1488 O HOH A 330 12.717 1.726 -12.251 1.00 46.88 O HETATM 1489 O HOH A 331 8.864 10.592 -2.823 1.00 54.24 O HETATM 1490 O HOH A 332 15.444 14.538 -0.116 1.00 37.90 O HETATM 1491 O HOH A 333 20.847 -10.215 -6.929 1.00 58.01 O HETATM 1492 O HOH A 334 21.600 3.607 9.863 1.00 49.65 O HETATM 1493 O HOH A 335 10.192 -11.206 -10.288 1.00 45.76 O HETATM 1494 O HOH A 336 18.215 0.205 -9.610 1.00 60.02 O HETATM 1495 O HOH A 337 18.490 7.400 13.541 1.00 55.09 O HETATM 1496 O HOH A 338 10.414 6.272 -6.441 1.00 48.18 O HETATM 1497 O HOH A 339 -4.010 8.847 5.428 1.00 56.07 O HETATM 1498 O HOH A 340 16.670 15.259 7.643 1.00 40.50 O HETATM 1499 O HOH A 341 12.653 7.446 -6.640 1.00 46.48 O HETATM 1500 O HOH A 342 4.424 15.652 16.453 1.00 30.37 O HETATM 1501 O HOH A 343 16.969 5.324 18.415 1.00 45.06 O HETATM 1502 O HOH A 344 20.825 0.954 -8.690 1.00 43.55 O HETATM 1503 O HOH A 345 2.952 -3.416 -8.497 1.00 51.81 O HETATM 1504 O HOH A 346 14.491 -9.024 4.681 1.00 46.17 O HETATM 1505 O HOH A 347 21.745 7.787 15.232 1.00 56.68 O HETATM 1506 O HOH A 348 0.000 3.660 0.000 0.50 32.53 O HETATM 1507 O HOH A 349 4.263 -4.068 15.947 1.00 40.41 O HETATM 1508 O HOH A 350 22.089 -2.117 -18.751 1.00 53.06 O HETATM 1509 O HOH A 351 7.258 8.357 -4.077 1.00 43.37 O HETATM 1510 O HOH A 352 -3.984 11.301 6.335 1.00 58.85 O HETATM 1511 O HOH A 353 19.269 -9.981 -9.119 1.00 59.25 O HETATM 1512 O HOH A 354 14.225 -0.949 15.754 1.00 45.11 O HETATM 1513 O HOH A 355 13.964 -13.318 -1.056 1.00 49.74 O HETATM 1514 O HOH A 356 16.550 -1.293 15.796 1.00 43.25 O HETATM 1515 O HOH A 357 24.385 -1.763 3.480 1.00 49.34 O HETATM 1516 O HOH A 358 6.897 15.878 16.428 1.00 37.64 O HETATM 1517 O HOH A 359 14.236 7.859 -13.088 1.00 58.39 O HETATM 1518 O HOH A 360 1.139 -0.801 2.340 1.00 36.36 O HETATM 1519 O HOH A 361 19.290 6.233 19.519 1.00 51.15 O HETATM 1520 O HOH A 362 4.422 -5.450 -11.558 1.00 51.76 O HETATM 1521 O HOH A 363 11.932 -4.265 -12.707 1.00 59.44 O HETATM 1522 O HOH A 364 7.423 12.585 4.178 1.00 49.24 O HETATM 1523 O HOH A 365 0.000 0.677 0.000 0.50 39.47 O HETATM 1524 O HOH A 366 19.576 -2.080 -17.364 1.00 61.20 O HETATM 1525 O HOH A 367 9.979 2.761 -11.414 1.00 55.18 O HETATM 1526 O HOH A 368 2.487 4.124 13.820 1.00 51.65 O HETATM 1527 O HOH A 369 4.856 12.423 4.410 1.00 47.12 O HETATM 1528 O HOH A 370 15.550 20.063 2.021 1.00 60.24 O HETATM 1529 O HOH A 371 6.442 -13.879 -2.872 1.00 51.47 O HETATM 1530 O HOH A 372 24.271 -11.834 -5.065 1.00 52.12 O HETATM 1531 O HOH A 373 4.040 -5.885 13.180 1.00 34.91 O HETATM 1532 O HOH B 301 15.036 -24.318 2.120 1.00 25.75 O HETATM 1533 O HOH B 302 21.532 -24.698 5.854 1.00 34.34 O HETATM 1534 O HOH B 303 19.794 -26.679 6.003 1.00 34.82 O HETATM 1535 O HOH B 304 15.584 -29.370 19.778 1.00 31.71 O HETATM 1536 O HOH B 305 -0.586 -25.375 14.220 1.00 32.00 O HETATM 1537 O HOH B 306 11.851 -21.775 1.325 1.00 30.95 O HETATM 1538 O HOH B 307 11.788 -32.692 -1.003 1.00 36.05 O HETATM 1539 O HOH B 308 19.479 -24.628 8.300 1.00 36.99 O HETATM 1540 O HOH B 309 1.695 -21.535 26.437 1.00 39.14 O HETATM 1541 O HOH B 310 4.019 -8.133 20.210 1.00 43.91 O HETATM 1542 O HOH B 311 8.145 -12.066 25.247 1.00 40.75 O HETATM 1543 O HOH B 312 16.962 -24.287 25.814 1.00 41.26 O HETATM 1544 O HOH B 313 9.511 -33.313 19.798 1.00 32.48 O HETATM 1545 O HOH B 314 19.182 -26.910 10.302 1.00 54.32 O HETATM 1546 O HOH B 315 3.141 -18.953 27.213 1.00 47.36 O HETATM 1547 O HOH B 316 17.906 -19.523 -2.166 1.00 65.75 O HETATM 1548 O HOH B 317 14.253 -34.659 14.121 1.00 60.53 O HETATM 1549 O HOH B 318 -2.636 -19.647 7.859 1.00 54.90 O HETATM 1550 O HOH B 319 -6.264 -15.014 17.305 1.00 52.84 O HETATM 1551 O HOH B 320 5.263 -23.573 26.779 1.00 49.07 O HETATM 1552 O HOH B 321 24.263 -23.310 3.651 1.00 47.58 O HETATM 1553 O HOH B 322 7.939 -19.618 1.239 1.00 39.49 O HETATM 1554 O HOH B 323 17.060 -32.374 12.141 1.00 45.66 O HETATM 1555 O HOH B 324 3.412 -31.871 8.528 1.00 51.73 O HETATM 1556 O HOH B 325 3.460 -33.303 12.954 1.00 57.48 O HETATM 1557 O HOH B 326 7.354 -34.056 18.284 1.00 33.73 O HETATM 1558 O HOH B 327 11.978 -10.486 15.001 1.00 52.17 O HETATM 1559 O HOH B 328 2.824 -35.362 -0.271 1.00 52.99 O HETATM 1560 O HOH B 329 2.245 -31.108 -4.526 1.00 55.93 O HETATM 1561 O HOH B 330 19.113 -18.630 1.751 1.00 55.04 O HETATM 1562 O HOH B 331 -4.775 -16.386 18.873 1.00 43.93 O HETATM 1563 O HOH B 332 4.867 -26.126 23.778 1.00 47.17 O HETATM 1564 O HOH B 333 4.999 -29.860 0.859 1.00 46.51 O HETATM 1565 O HOH B 334 17.055 -17.723 21.639 1.00 40.71 O HETATM 1566 O HOH B 335 4.415 -25.724 29.025 1.00 49.47 O HETATM 1567 O HOH B 336 4.381 -14.693 4.000 1.00 50.27 O HETATM 1568 O HOH B 337 25.716 -25.200 4.577 1.00 52.86 O HETATM 1569 O HOH B 338 1.546 -10.666 25.113 1.00 44.21 O HETATM 1570 O HOH B 339 1.639 -26.478 21.484 1.00 47.92 O HETATM 1571 O HOH B 340 9.612 -21.297 0.562 1.00 46.03 O HETATM 1572 O HOH B 341 12.605 -35.506 0.419 1.00 42.87 O HETATM 1573 O HOH B 342 2.976 -32.689 18.888 1.00 46.98 O HETATM 1574 O HOH B 343 -3.657 -19.085 12.482 1.00 47.81 O HETATM 1575 O HOH B 344 19.970 -19.570 -0.491 1.00 50.41 O HETATM 1576 O HOH B 345 -3.397 -23.198 7.474 1.00 43.27 O HETATM 1577 O HOH B 346 2.849 -23.628 30.043 1.00 56.24 O HETATM 1578 O HOH B 347 1.463 -30.580 18.719 1.00 51.66 O HETATM 1579 O HOH B 348 23.991 -26.182 6.929 1.00 52.42 O HETATM 1580 O HOH B 349 1.778 -14.472 3.389 1.00 57.45 O HETATM 1581 O HOH B 350 10.833 -35.151 -1.382 1.00 40.97 O HETATM 1582 O HOH B 351 19.350 -23.223 15.413 1.00 53.79 O HETATM 1583 O HOH B 352 -3.225 -14.292 25.487 1.00 57.02 O HETATM 1584 O HOH B 353 14.422 -10.818 25.796 1.00 52.03 O HETATM 1585 O HOH B 354 -0.801 -27.492 15.899 1.00 54.54 O HETATM 1586 O HOH B 355 -0.190 -25.440 19.916 1.00 64.57 O CONECT 1389 1390 1399 1400 CONECT 1390 1389 1391 1398 CONECT 1391 1390 1392 CONECT 1392 1391 1393 CONECT 1393 1392 1394 CONECT 1394 1393 1395 1396 CONECT 1395 1394 CONECT 1396 1394 1397 CONECT 1397 1396 CONECT 1398 1390 CONECT 1399 1389 1418 CONECT 1400 1389 1401 1408 CONECT 1401 1400 1402 1404 CONECT 1402 1401 1403 CONECT 1403 1402 1407 CONECT 1404 1401 1405 CONECT 1405 1404 1406 1407 CONECT 1406 1405 CONECT 1407 1403 1405 CONECT 1408 1400 1409 1411 1418 CONECT 1409 1408 1410 CONECT 1410 1409 CONECT 1411 1408 1412 1414 CONECT 1412 1411 1413 CONECT 1413 1412 1416 CONECT 1414 1411 1415 CONECT 1415 1414 1416 CONECT 1416 1413 1415 1417 CONECT 1417 1416 CONECT 1418 1399 1408 1419 CONECT 1419 1418 1420 CONECT 1420 1419 1421 1422 1423 CONECT 1421 1420 CONECT 1422 1420 CONECT 1423 1420 CONECT 1424 1425 1434 1435 CONECT 1425 1424 1426 1433 CONECT 1426 1425 1427 CONECT 1427 1426 1428 CONECT 1428 1427 1429 CONECT 1429 1428 1430 1431 CONECT 1430 1429 CONECT 1431 1429 1432 CONECT 1432 1431 CONECT 1433 1425 CONECT 1434 1424 1453 CONECT 1435 1424 1436 1443 CONECT 1436 1435 1437 1439 CONECT 1437 1436 1438 CONECT 1438 1437 1442 CONECT 1439 1436 1440 CONECT 1440 1439 1441 1442 CONECT 1441 1440 CONECT 1442 1438 1440 CONECT 1443 1435 1444 1446 1453 CONECT 1444 1443 1445 CONECT 1445 1444 CONECT 1446 1443 1447 1449 CONECT 1447 1446 1448 CONECT 1448 1447 1451 CONECT 1449 1446 1450 CONECT 1450 1449 1451 CONECT 1451 1448 1450 1452 CONECT 1452 1451 CONECT 1453 1434 1443 1454 CONECT 1454 1453 1455 CONECT 1455 1454 1456 1457 1458 CONECT 1456 1455 CONECT 1457 1455 CONECT 1458 1455 MASTER 299 0 2 8 6 0 6 6 1564 2 70 14 END