HEADER HYDROLASE 21-MAR-13 4JRL TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE (BACOVA_00087) TITLE 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: ZP_02063147.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS GALACTOSE-BINDING DOMAIN-LIKE, PF13201 FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4JRL 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4JRL 1 JRNL REVDAT 2 15-NOV-17 4JRL 1 REMARK REVDAT 1 24-APR-13 4JRL 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE JRNL TITL 2 (BACOVA_00087) FROM BACTEROIDES OVATUS ATCC 8483 AT 2.10 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.65000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2818 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2614 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3818 ; 1.782 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6042 ; 0.803 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 3.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;31.971 ;25.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;10.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3212 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 626 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 3.930 ; 5.992 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1396 ; 3.924 ; 5.991 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1746 ; 5.070 ;11.198 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3570 32.2330 19.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: 0.0622 REMARK 3 T33: 0.0652 T12: 0.0138 REMARK 3 T13: 0.0104 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5632 L22: 0.4978 REMARK 3 L33: 0.8964 L12: 0.2146 REMARK 3 L13: 0.3081 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0269 S13: -0.0874 REMARK 3 S21: 0.0450 S22: 0.0429 S23: -0.1227 REMARK 3 S31: 0.0078 S32: 0.1192 S33: -0.0441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2 .A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. SODIUM (NA), CHLORIDE (CL), AND GLYCEROL (GOL) REMARK 3 FROM THE CRYSTALLIZATION/CRYO CONDITIONS HAVE BEEN MODELED INTO REMARK 3 THE STRUCTURE.4.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 5.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 6. AN UNKNOWN ION (UNX) HAS BEEN MODELED BASED ON A PEAK IN THE REMARK 3 ANOMALOUS DIFFERENCE FOURIER MAP. THE ION LIKELY CO-PURIFIED REMARK 3 WITH THE PROTEIN. X-RAY FLUORESCENCE EXCITATION SPECTRA WERE REMARK 3 INCONCLUSIVE IN DETERMINING THE METAL IDENTITY WITH MINOR PEAKS REMARK 3 FOR ZN, CU, FE AND CA. FOR THE PURPOSE OF REFINEMENT THE UNX REMARK 3 ATOM TYPE X WAS ASSIGNED SCATTERING FACTORS EQUIVALENT TO CA REMARK 3 WHICH GAVE A REASONABLE FIT TO THE OBSERVED DENSITY. 7. THE REMARK 3 SCATTERING FACTORS FOR SULFUR, CHLORINE, SELENIUM AND THE REMARK 3 UNKNOWN X ATOMS WERE ADJUSTED BY REFMAC 5.7.0032 TO ACCOUNT FOR REMARK 3 ANOMALOUS DISPERSION BASED ON THE WAVELENGTH 0.91837 A (S F'= REMARK 3 0.16, CL F'= 0.19, SE F'= -1.94, X F'= 0.27). THE CROMER MANN REMARK 3 VALUES LISTED IN THE CIF VERSION OF THE FILE INCLUDE THIS REMARK 3 CORRECTION. REMARK 4 REMARK 4 4JRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.711 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 9, 2.4M AMMONIUM REMARK 280 SULFATE, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.94000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.64783 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.49933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.94000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.64783 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.49933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.94000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.64783 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.49933 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.94000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.64783 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.49933 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.94000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.64783 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.49933 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.94000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.64783 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.49933 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.29565 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.99867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 77.29565 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 84.99867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 77.29565 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 84.99867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 77.29565 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.99867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 77.29565 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 84.99867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 77.29565 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 84.99867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -66.94000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 38.64783 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.49933 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 SER A 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 LYS A 207 CE NZ REMARK 470 LYS A 253 CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 107 -36.52 -37.82 REMARK 500 MSE A 208 68.95 -117.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416928 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 21-375) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4JRL A 21 375 UNP A7LQL7 A7LQL7_BACOV 21 375 SEQADV 4JRL GLY A 0 UNP A7LQL7 EXPRESSION TAG SEQRES 1 A 356 GLY GLN ASP GLU ALA LEU ASN SER GLU ALA ALA ILE ASP SEQRES 2 A 356 VAL CYS SER GLY ASP ASP VAL GLN LEU ALA ASN ILE ASP SEQRES 3 A 356 ALA ASP SER LYS VAL ILE ASN VAL TYR VAL ASN LYS GLY SEQRES 4 A 356 ALA ASP LEU SER LYS GLN LYS LEU GLU PHE THR LEU PRO SEQRES 5 A 356 GLN GLY ALA THR ILE LYS VAL ASN THR PRO ILE THR GLY SEQRES 6 A 356 ASP THR GLU SER THR TYR ASP PHE SER GLU GLU PRO HIS SEQRES 7 A 356 SER ARG LYS PHE THR VAL THR SER GLU ASP GLY GLN TRP SEQRES 8 A 356 GLN PRO VAL TYR THR VAL ASN VAL ILE LEU ALA GLU LEU SEQRES 9 A 356 PRO THR LEU PHE LYS PHE GLU GLU LEU LEU THR THR SER SEQRES 10 A 356 SER GLU TYR ASP THR PHE TYR GLU PHE THR PRO ALA THR SEQRES 11 A 356 SER GLN GLU ILE SER LYS VAL LEU GLN TRP SER SER GLY SEQRES 12 A 356 ASN PRO GLY PHE LYS LEU THR GLY MSE ALA ASN SER ARG SEQRES 13 A 356 ILE ASP TYR PRO THR VAL GLN VAL ALA ASN GLY PHE LYS SEQRES 14 A 356 GLY LYS ALA VAL LYS LEU GLU THR ARG ASN THR GLY ASP SEQRES 15 A 356 PHE GLY ALA MSE VAL LYS MSE TYR ILE ALA ALA GLY ASN SEQRES 16 A 356 LEU PHE ILE GLY THR PHE GLU VAL GLU ASN ALA LEU THR SEQRES 17 A 356 ASN PRO ARG LYS ALA THR ASN PHE GLY PHE GLN PHE TYR SEQRES 18 A 356 LYS HIS PRO ILE ALA LEU LYS GLY TYR TYR LYS PHE LYS SEQRES 19 A 356 ALA GLY GLU VAL TYR SER VAL GLU GLY GLN PRO GLN THR SEQRES 20 A 356 GLY LYS ARG ASP LYS CYS ASP ILE TYR ALA VAL MSE TYR SEQRES 21 A 356 GLU ALA GLU ASN ASN SER ILE MSE LEU ASN GLY ASP ASN SEQRES 22 A 356 VAL PHE ASN SER ASP LYS LEU VAL LEU LEU ALA ARG ILE SEQRES 23 A 356 GLU PRO GLU ASP ILE VAL GLU SER ASP GLU TRP ASN GLU SEQRES 24 A 356 PHE THR ILE HIS PHE GLU SER VAL LYS GLY ARG GLU ILE SEQRES 25 A 356 ASP ASP THR LYS LEU GLN ASN GLY LYS TYR LYS LEU GLY SEQRES 26 A 356 ILE VAL LEU SER SER SER VAL ASP GLY ALA TYR PHE ARG SEQRES 27 A 356 GLY ALA VAL GLY SER THR LEU TYR VAL ASP GLU LEU GLU SEQRES 28 A 356 LEU ILE CYS LYS GLU MODRES 4JRL MSE A 171 MET SELENOMETHIONINE MODRES 4JRL MSE A 205 MET SELENOMETHIONINE MODRES 4JRL MSE A 208 MET SELENOMETHIONINE MODRES 4JRL MSE A 278 MET SELENOMETHIONINE MODRES 4JRL MSE A 287 MET SELENOMETHIONINE HET MSE A 171 8 HET MSE A 205 8 HET MSE A 208 8 HET MSE A 278 8 HET MSE A 287 8 HET UNX A 401 1 HET CL A 402 1 HET SO4 A 403 5 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 UNX X FORMUL 3 CL CL 1- FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *166(H2 O) HELIX 1 1 ASP A 60 GLN A 64 5 5 HELIX 2 2 GLY A 162 LEU A 168 1 7 HELIX 3 3 SER A 174 TYR A 178 5 5 HELIX 4 4 THR A 199 VAL A 206 1 8 HELIX 5 5 VAL A 222 ALA A 225 5 4 HELIX 6 6 ASN A 228 ALA A 232 1 5 HELIX 7 7 GLU A 306 ILE A 310 5 5 HELIX 8 8 ASP A 332 ASN A 338 1 7 HELIX 9 9 ASP A 352 TYR A 355 5 4 SHEET 1 A 2 VAL A 33 GLY A 36 0 SHEET 2 A 2 LEU A 66 THR A 69 -1 O GLU A 67 N SER A 35 SHEET 1 B 5 VAL A 39 ASP A 45 0 SHEET 2 B 5 VAL A 50 ASN A 56 -1 O TYR A 54 N LEU A 41 SHEET 3 B 5 VAL A 113 GLU A 122 1 O ASN A 117 N VAL A 53 SHEET 4 B 5 SER A 98 THR A 104 -1 N PHE A 101 O TYR A 114 SHEET 5 B 5 THR A 75 VAL A 78 -1 N THR A 75 O THR A 104 SHEET 1 C 6 VAL A 39 ASP A 45 0 SHEET 2 C 6 VAL A 50 ASN A 56 -1 O TYR A 54 N LEU A 41 SHEET 3 C 6 VAL A 113 GLU A 122 1 O ASN A 117 N VAL A 53 SHEET 4 C 6 SER A 154 GLN A 158 1 O SER A 154 N GLU A 122 SHEET 5 C 6 PHE A 142 THR A 146 -1 N GLU A 144 O LEU A 157 SHEET 6 C 6 GLU A 131 LEU A 132 -1 N GLU A 131 O TYR A 143 SHEET 1 D 4 LEU A 126 PHE A 127 0 SHEET 2 D 4 THR A 363 CYS A 373 -1 O LEU A 369 N PHE A 127 SHEET 3 D 4 ALA A 191 GLU A 195 -1 N LEU A 194 O LEU A 364 SHEET 4 D 4 THR A 180 VAL A 183 -1 N VAL A 181 O LYS A 193 SHEET 1 E 4 LEU A 126 PHE A 127 0 SHEET 2 E 4 THR A 363 CYS A 373 -1 O LEU A 369 N PHE A 127 SHEET 3 E 4 PRO A 243 LYS A 253 -1 N ALA A 245 O ILE A 372 SHEET 4 E 4 ASN A 317 HIS A 322 -1 O ILE A 321 N LEU A 246 SHEET 1 F 2 ARG A 197 ASN A 198 0 SHEET 2 F 2 ILE A 210 ALA A 211 -1 O ALA A 211 N ARG A 197 SHEET 1 G 3 ASN A 214 PHE A 216 0 SHEET 2 G 3 TYR A 341 SER A 348 -1 O LEU A 347 N LEU A 215 SHEET 3 G 3 PHE A 237 GLN A 238 -1 N PHE A 237 O LEU A 343 SHEET 1 H 5 ASN A 214 PHE A 216 0 SHEET 2 H 5 TYR A 341 SER A 348 -1 O LEU A 347 N LEU A 215 SHEET 3 H 5 ASP A 273 GLU A 280 -1 N TYR A 275 O VAL A 346 SHEET 4 H 5 LEU A 299 ARG A 304 -1 O VAL A 300 N MSE A 278 SHEET 5 H 5 GLU A 324 SER A 325 -1 O GLU A 324 N LEU A 302 SHEET 1 I 3 GLY A 218 PHE A 220 0 SHEET 2 I 3 THR A 233 PHE A 235 -1 O ASN A 234 N THR A 219 SHEET 3 I 3 LEU A 288 ASN A 289 -1 O LEU A 288 N PHE A 235 SHEET 1 J 3 GLN A 263 GLN A 265 0 SHEET 2 J 3 TYR A 258 VAL A 260 -1 N TYR A 258 O GLN A 265 SHEET 3 J 3 ARG A 357 ALA A 359 -1 O GLY A 358 N SER A 259 LINK C GLY A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N ALA A 172 1555 1555 1.33 LINK C ALA A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N VAL A 206 1555 1555 1.33 LINK C LYS A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N TYR A 209 1555 1555 1.32 LINK C VAL A 277 N MSE A 278 1555 1555 1.34 LINK C MSE A 278 N TYR A 279 1555 1555 1.33 LINK C ILE A 286 N MSE A 287 1555 1555 1.32 LINK C MSE A 287 N LEU A 288 1555 1555 1.32 CISPEP 1 GLU A 95 PRO A 96 0 3.24 SITE 1 AC1 1 THR A 134 SITE 1 AC2 3 HIS A 322 PHE A 323 SER A 325 SITE 1 AC3 2 THR A 266 LYS A 327 SITE 1 AC4 6 ASN A 214 TYR A 275 ALA A 354 HOH A 533 SITE 2 AC4 6 HOH A 561 HOH A 611 SITE 1 AC5 4 ASN A 292 SER A 296 ASP A 297 LYS A 298 SITE 1 AC6 10 ASP A 38 ASN A 56 LYS A 57 ALA A 59 SITE 2 AC6 10 PHE A 237 GLN A 238 ASN A 284 LYS A 342 SITE 3 AC6 10 HOH A 505 HOH A 525 CRYST1 133.880 133.880 127.498 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007469 0.004312 0.000000 0.00000 SCALE2 0.000000 0.008625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007843 0.00000