HEADER OXIDOREDUCTASE 21-MAR-13 4JRR TITLE CRYSTAL STRUCTURE OF DISULFIDE BOND OXIDOREDUCTASE DSBA1 FROM TITLE 2 LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1; SOURCE 5 GENE: DSBA, LPG0123; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, DISULFIDE BOND OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,M.JAMESON-LEE,M.CYMBOROWSKI,M.J.DOMAGALSKI,O.CHERTIHIN, AUTHOR 2 Z.Z.KPADEH,A.J.YEH,P.S.HOFFMAN,W.F.ANDERSON,W.MINOR,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 28-FEB-24 4JRR 1 REMARK REVDAT 2 13-APR-22 4JRR 1 AUTHOR JRNL REMARK SEQADV REVDAT 1 24-APR-13 4JRR 0 JRNL AUTH I.A.SHUMILIN,M.JAMESON-LEE,M.CYMBOROWSKI,M.J.DOMAGALSKI, JRNL AUTH 2 O.CHERTIHIN,Z.Z.KPADEH,A.J.YEH,P.S.HOFFMAN,W.F.ANDERSON, JRNL AUTH 3 W.MINOR JRNL TITL CRYSTAL STRUCTURE OF DISULFIDE BOND OXIDOREDUCTASE DSBA1 JRNL TITL 2 FROM LEGIONELLA PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3332 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.62000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4701 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4463 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6380 ; 1.808 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10319 ; 3.540 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.962 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;36.150 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;15.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;13.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5297 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1082 ; 0.023 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 34 215 B 34 215 9900 0.200 0.050 REMARK 3 2 A 33 215 C 33 215 9745 0.220 0.050 REMARK 3 3 B 34 216 C 34 216 10245 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0420 25.9370 42.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.1033 REMARK 3 T33: 0.1516 T12: 0.0177 REMARK 3 T13: -0.0296 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.0802 L22: 0.1743 REMARK 3 L33: 0.1911 L12: 0.1962 REMARK 3 L13: -0.1565 L23: 0.0561 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.0400 S13: 0.1184 REMARK 3 S21: -0.0131 S22: -0.0322 S23: 0.0340 REMARK 3 S31: 0.0260 S32: 0.0173 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 51.3900 20.0000 48.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.1172 REMARK 3 T33: 0.1180 T12: -0.0002 REMARK 3 T13: -0.0409 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.2264 L22: 0.3676 REMARK 3 L33: 0.1460 L12: -0.2723 REMARK 3 L13: -0.3385 L23: -0.1269 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.2190 S13: -0.0861 REMARK 3 S21: 0.0132 S22: -0.0566 S23: 0.0056 REMARK 3 S31: -0.0141 S32: 0.0644 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8780 20.4110 42.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0485 REMARK 3 T33: 0.1068 T12: 0.0071 REMARK 3 T13: -0.0684 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 3.4652 L22: 0.1164 REMARK 3 L33: 4.5868 L12: 0.5136 REMARK 3 L13: -1.3616 L23: -0.6021 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.0847 S13: -0.0768 REMARK 3 S21: -0.0258 S22: -0.0018 S23: 0.0027 REMARK 3 S31: 0.2261 S32: -0.0658 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4290 -5.9220 -5.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.1060 REMARK 3 T33: 0.0540 T12: 0.0038 REMARK 3 T13: -0.0582 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.6969 L22: 0.9599 REMARK 3 L33: 1.3263 L12: 0.2128 REMARK 3 L13: -0.4213 L23: -0.8964 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.0588 S13: 0.0336 REMARK 3 S21: -0.1789 S22: 0.0407 S23: 0.0880 REMARK 3 S31: 0.0512 S32: -0.0391 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0730 -1.6680 -0.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.1704 REMARK 3 T33: 0.1150 T12: 0.0265 REMARK 3 T13: -0.0335 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 14.3654 L22: 0.9055 REMARK 3 L33: 2.6538 L12: 3.1471 REMARK 3 L13: -2.1058 L23: -0.3194 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.1383 S13: 0.6335 REMARK 3 S21: -0.1884 S22: 0.0769 S23: 0.1271 REMARK 3 S31: -0.5954 S32: -0.1364 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6470 -0.6820 -0.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.1018 REMARK 3 T33: 0.0375 T12: -0.0101 REMARK 3 T13: -0.0104 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.4834 L22: 1.5733 REMARK 3 L33: 1.4911 L12: 0.4822 REMARK 3 L13: 0.5887 L23: 0.8748 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.0124 S13: -0.0327 REMARK 3 S21: -0.1265 S22: 0.0670 S23: -0.0413 REMARK 3 S31: -0.0959 S32: 0.0832 S33: -0.0428 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 53 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4590 37.8820 23.9000 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0521 REMARK 3 T33: 0.1465 T12: 0.0087 REMARK 3 T13: -0.0633 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.4351 L22: 1.2269 REMARK 3 L33: 3.2085 L12: 1.3211 REMARK 3 L13: -1.2992 L23: -1.0945 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.0810 S13: 0.2543 REMARK 3 S21: -0.0637 S22: 0.0809 S23: 0.2652 REMARK 3 S31: -0.1937 S32: 0.0733 S33: -0.0363 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 54 C 161 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7110 14.3740 26.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0827 REMARK 3 T33: 0.1316 T12: 0.0000 REMARK 3 T13: -0.0426 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.4168 L22: 2.0147 REMARK 3 L33: 0.2794 L12: -0.6990 REMARK 3 L13: -0.1664 L23: 0.4706 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0407 S13: -0.0313 REMARK 3 S21: -0.1278 S22: -0.0696 S23: 0.0590 REMARK 3 S31: -0.0076 S32: -0.0361 S33: 0.0285 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 162 C 217 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9990 30.6240 27.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0861 REMARK 3 T33: 0.1273 T12: 0.0097 REMARK 3 T13: -0.0516 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.1355 L22: 1.3884 REMARK 3 L33: 0.4510 L12: 0.3872 REMARK 3 L13: -0.5542 L23: -0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0163 S13: 0.0768 REMARK 3 S21: -0.1320 S22: 0.0345 S23: 0.1336 REMARK 3 S31: -0.0384 S32: -0.0175 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4JRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BTP, 0.2M AMMONIUM SULFATE, 25% REMARK 280 PEG 3350, 0.02M DTT, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.06850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 217 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 HIS B 31 REMARK 465 MET B 32 REMARK 465 GLN B 33 REMARK 465 GLY C 29 REMARK 465 SER C 30 REMARK 465 HIS C 31 REMARK 465 MET C 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 78.05 -113.75 REMARK 500 ASN A 99 -18.16 91.43 REMARK 500 ASN A 160 64.88 -150.19 REMARK 500 LYS A 191 -35.84 -150.60 REMARK 500 ASP B 53 53.99 -143.31 REMARK 500 ASN B 99 -13.42 81.56 REMARK 500 ASN B 160 58.05 -150.26 REMARK 500 LYS B 191 -40.73 -134.61 REMARK 500 LYS C 54 46.53 -151.00 REMARK 500 LYS C 85 -3.74 -59.29 REMARK 500 ASN C 99 -21.80 86.70 REMARK 500 LYS C 131 39.27 70.54 REMARK 500 LYS C 191 -38.45 -132.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91802 RELATED DB: TARGETTRACK DBREF 4JRR A 33 217 UNP Q5ZZ88 Q5ZZ88_LEGPH 33 217 DBREF 4JRR B 33 217 UNP Q5ZZ88 Q5ZZ88_LEGPH 33 217 DBREF 4JRR C 33 217 UNP Q5ZZ88 Q5ZZ88_LEGPH 33 217 SEQADV 4JRR GLY A 29 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR SER A 30 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR HIS A 31 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR MET A 32 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR GLY B 29 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR SER B 30 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR HIS B 31 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR MET B 32 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR GLY C 29 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR SER C 30 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR HIS C 31 UNP Q5ZZ88 EXPRESSION TAG SEQADV 4JRR MET C 32 UNP Q5ZZ88 EXPRESSION TAG SEQRES 1 A 189 GLY SER HIS MET GLN PHE ILE GLU GLY LYS ASP TYR GLN SEQRES 2 A 189 THR VAL ALA SER ALA GLN LEU SER THR ASN LYS ASP LYS SEQRES 3 A 189 THR PRO LEU ILE THR GLU PHE PHE SER TYR GLY CYS PRO SEQRES 4 A 189 TRP CYS TYR LYS ILE ASP ALA PRO LEU ASN ASP TRP ALA SEQRES 5 A 189 THR ARG MET GLY LYS GLY ALA HIS LEU GLU ARG VAL PRO SEQRES 6 A 189 VAL VAL PHE LYS PRO ASN TRP ASP LEU TYR ALA LYS ALA SEQRES 7 A 189 TYR TYR THR ALA LYS THR LEU ALA MET SER ASP LYS MET SEQRES 8 A 189 ASN PRO ILE LEU PHE LYS ALA ILE GLN GLU ASP LYS ASN SEQRES 9 A 189 PRO LEU ALA THR LYS GLN SER MET VAL ASP PHE PHE VAL SEQRES 10 A 189 ALA HIS GLY VAL ASP ARG GLU ILE ALA LYS SER ALA PHE SEQRES 11 A 189 GLU ASN SER PRO THR ILE ASP MET ARG VAL ASN SER GLY SEQRES 12 A 189 MET SER LEU MET ALA HIS TYR GLN ILE ASN ALA VAL PRO SEQRES 13 A 189 ALA PHE VAL VAL ASN ASN LYS TYR LYS THR ASP LEU GLN SEQRES 14 A 189 MET ALA GLY SER GLU GLU ARG LEU PHE GLU ILE LEU ASN SEQRES 15 A 189 TYR LEU VAL ARG LYS SER ALA SEQRES 1 B 189 GLY SER HIS MET GLN PHE ILE GLU GLY LYS ASP TYR GLN SEQRES 2 B 189 THR VAL ALA SER ALA GLN LEU SER THR ASN LYS ASP LYS SEQRES 3 B 189 THR PRO LEU ILE THR GLU PHE PHE SER TYR GLY CYS PRO SEQRES 4 B 189 TRP CYS TYR LYS ILE ASP ALA PRO LEU ASN ASP TRP ALA SEQRES 5 B 189 THR ARG MET GLY LYS GLY ALA HIS LEU GLU ARG VAL PRO SEQRES 6 B 189 VAL VAL PHE LYS PRO ASN TRP ASP LEU TYR ALA LYS ALA SEQRES 7 B 189 TYR TYR THR ALA LYS THR LEU ALA MET SER ASP LYS MET SEQRES 8 B 189 ASN PRO ILE LEU PHE LYS ALA ILE GLN GLU ASP LYS ASN SEQRES 9 B 189 PRO LEU ALA THR LYS GLN SER MET VAL ASP PHE PHE VAL SEQRES 10 B 189 ALA HIS GLY VAL ASP ARG GLU ILE ALA LYS SER ALA PHE SEQRES 11 B 189 GLU ASN SER PRO THR ILE ASP MET ARG VAL ASN SER GLY SEQRES 12 B 189 MET SER LEU MET ALA HIS TYR GLN ILE ASN ALA VAL PRO SEQRES 13 B 189 ALA PHE VAL VAL ASN ASN LYS TYR LYS THR ASP LEU GLN SEQRES 14 B 189 MET ALA GLY SER GLU GLU ARG LEU PHE GLU ILE LEU ASN SEQRES 15 B 189 TYR LEU VAL ARG LYS SER ALA SEQRES 1 C 189 GLY SER HIS MET GLN PHE ILE GLU GLY LYS ASP TYR GLN SEQRES 2 C 189 THR VAL ALA SER ALA GLN LEU SER THR ASN LYS ASP LYS SEQRES 3 C 189 THR PRO LEU ILE THR GLU PHE PHE SER TYR GLY CYS PRO SEQRES 4 C 189 TRP CYS TYR LYS ILE ASP ALA PRO LEU ASN ASP TRP ALA SEQRES 5 C 189 THR ARG MET GLY LYS GLY ALA HIS LEU GLU ARG VAL PRO SEQRES 6 C 189 VAL VAL PHE LYS PRO ASN TRP ASP LEU TYR ALA LYS ALA SEQRES 7 C 189 TYR TYR THR ALA LYS THR LEU ALA MET SER ASP LYS MET SEQRES 8 C 189 ASN PRO ILE LEU PHE LYS ALA ILE GLN GLU ASP LYS ASN SEQRES 9 C 189 PRO LEU ALA THR LYS GLN SER MET VAL ASP PHE PHE VAL SEQRES 10 C 189 ALA HIS GLY VAL ASP ARG GLU ILE ALA LYS SER ALA PHE SEQRES 11 C 189 GLU ASN SER PRO THR ILE ASP MET ARG VAL ASN SER GLY SEQRES 12 C 189 MET SER LEU MET ALA HIS TYR GLN ILE ASN ALA VAL PRO SEQRES 13 C 189 ALA PHE VAL VAL ASN ASN LYS TYR LYS THR ASP LEU GLN SEQRES 14 C 189 MET ALA GLY SER GLU GLU ARG LEU PHE GLU ILE LEU ASN SEQRES 15 C 189 TYR LEU VAL ARG LYS SER ALA HET SO4 A 301 5 HET GOL A 302 6 HET GOL A 303 6 HET SO4 B 301 5 HET SO4 C 301 5 HET SO4 C 302 5 HET GOL C 303 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 11 HOH *376(H2 O) HELIX 1 1 ASN A 51 THR A 55 5 5 HELIX 2 2 CYS A 66 GLY A 84 1 19 HELIX 3 3 LYS A 85 ALA A 87 5 3 HELIX 4 4 ASN A 99 LEU A 113 1 15 HELIX 5 5 MET A 115 GLU A 129 1 15 HELIX 6 6 THR A 136 HIS A 147 1 12 HELIX 7 7 ASP A 150 ASN A 160 1 11 HELIX 8 8 SER A 161 TYR A 178 1 18 HELIX 9 9 LEU A 196 GLY A 200 1 5 HELIX 10 10 SER A 201 ARG A 214 1 14 HELIX 11 11 CYS B 66 MET B 83 1 18 HELIX 12 12 ASN B 99 LEU B 113 1 15 HELIX 13 13 MET B 115 GLU B 129 1 15 HELIX 14 14 THR B 136 HIS B 147 1 12 HELIX 15 15 ASP B 150 ASN B 160 1 11 HELIX 16 16 SER B 161 TYR B 178 1 18 HELIX 17 17 LEU B 196 GLY B 200 1 5 HELIX 18 18 SER B 201 SER B 216 1 16 HELIX 19 19 CYS C 66 GLY C 84 1 19 HELIX 20 20 LYS C 85 ALA C 87 5 3 HELIX 21 21 ASN C 99 LEU C 113 1 15 HELIX 22 22 MET C 115 GLU C 129 1 15 HELIX 23 23 THR C 136 HIS C 147 1 12 HELIX 24 24 ASP C 150 ASN C 160 1 11 HELIX 25 25 SER C 161 TYR C 178 1 18 HELIX 26 26 LEU C 196 GLY C 200 1 5 HELIX 27 27 SER C 201 SER C 216 1 16 SHEET 1 A 2 SER A 30 HIS A 31 0 SHEET 2 A 2 ALA C 182 VAL C 183 -1 O VAL C 183 N SER A 30 SHEET 1 B 5 GLN A 41 THR A 42 0 SHEET 2 B 5 TYR A 192 ASP A 195 -1 O LYS A 193 N GLN A 41 SHEET 3 B 5 ALA A 185 VAL A 188 -1 N VAL A 188 O TYR A 192 SHEET 4 B 5 LEU A 57 PHE A 62 -1 N THR A 59 O VAL A 187 SHEET 5 B 5 HIS A 88 PRO A 93 1 O GLU A 90 N ILE A 58 SHEET 1 C 5 GLN B 41 THR B 42 0 SHEET 2 C 5 TYR B 192 ASP B 195 -1 O LYS B 193 N GLN B 41 SHEET 3 C 5 ALA B 185 VAL B 188 -1 N VAL B 188 O TYR B 192 SHEET 4 C 5 LEU B 57 PHE B 62 -1 N THR B 59 O VAL B 187 SHEET 5 C 5 HIS B 88 PRO B 93 1 O VAL B 92 N GLU B 60 SHEET 1 D 5 GLN C 41 THR C 42 0 SHEET 2 D 5 TYR C 192 ASP C 195 -1 O LYS C 193 N GLN C 41 SHEET 3 D 5 ALA C 185 VAL C 188 -1 N VAL C 188 O TYR C 192 SHEET 4 D 5 LEU C 57 PHE C 62 -1 N PHE C 61 O ALA C 185 SHEET 5 D 5 HIS C 88 PRO C 93 1 O GLU C 90 N ILE C 58 CISPEP 1 THR A 55 PRO A 56 0 -16.95 CISPEP 2 VAL A 183 PRO A 184 0 -4.90 CISPEP 3 THR B 55 PRO B 56 0 -9.66 CISPEP 4 VAL B 183 PRO B 184 0 -4.62 CISPEP 5 THR C 55 PRO C 56 0 -9.95 CISPEP 6 VAL C 183 PRO C 184 0 1.08 SITE 1 AC1 4 ALA A 135 THR A 136 LYS A 137 HOH A 496 SITE 1 AC2 5 ALA A 46 GLN A 47 SER A 173 LEU A 174 SITE 2 AC2 5 HOH A 451 SITE 1 AC3 9 ASP A 150 HOH A 487 HOH A 497 GLY C 65 SITE 2 AC3 9 TRP C 100 ILE C 127 GLN C 128 HOH C 405 SITE 3 AC3 9 HOH C 478 SITE 1 AC4 3 THR B 136 LYS B 137 HOH B 459 SITE 1 AC5 6 ARG A 82 THR C 136 LYS C 137 HOH C 402 SITE 2 AC5 6 HOH C 499 HOH C 529 SITE 1 AC6 8 LYS A 54 ARG A 167 HOH A 499 LYS C 71 SITE 2 AC6 8 SER C 201 GLU C 202 GOL C 303 HOH C 496 SITE 1 AC7 8 LYS A 111 THR A 112 ARG A 167 HOH A 426 SITE 2 AC7 8 HOH A 500 TRP C 68 LYS C 71 SO4 C 302 CRYST1 55.876 80.137 66.257 90.00 92.86 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017897 0.000000 0.000894 0.00000 SCALE2 0.000000 0.012479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015112 0.00000