HEADER IMMUNE SYSTEM 22-MAR-13 4JRY TITLE CRYSTAL STRUCTURE OF SB47 TCR-HLA B*3505-LPEP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-300; COMPND 5 SYNONYM: HEAVY CHAIN HLA B*3508; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANS-ACTIVATOR PROTEIN BZLF1; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: UNP RESIDUES 52-64; COMPND 16 SYNONYM: LPEP PEPTIDE, EB1, ZEBRA; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: SB47 TCR ALPHA CHAIN; COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: SB47 TCR BETA CHAIN; COMPND 24 CHAIN: E; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 24 ORGANISM_COMMON: EPSTEIN BARR VIRUS; SOURCE 25 ORGANISM_TAXID: 10376; SOURCE 26 OTHER_DETAILS: COMMERCIAL SOURCE; SOURCE 27 MOL_ID: 4; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 34 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 35 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 36 MOL_ID: 5; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 41 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 42 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 43 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 44 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TCR, T CELL, HLA B*3508, LPEP, EBV, ALLOREACTIVITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.LIU,J.ROSSJOHN,S.GRAS REVDAT 4 08-NOV-23 4JRY 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4JRY 1 REMARK REVDAT 2 07-MAY-14 4JRY 1 JRNL REVDAT 1 10-APR-13 4JRY 0 JRNL AUTH Y.C.LIU,J.J.MILES,M.A.NELLER,E.GOSTICK,D.A.PRICE, JRNL AUTH 2 A.W.PURCELL,J.MCCLUSKEY,S.R.BURROWS,J.ROSSJOHN,S.GRAS JRNL TITL HIGHLY DIVERGENT T-CELL RECEPTOR BINDING MODES UNDERLIE JRNL TITL 2 SPECIFIC RECOGNITION OF A BULGED VIRAL PEPTIDE BOUND TO A JRNL TITL 3 HUMAN LEUKOCYTE ANTIGEN CLASS I MOLECULE. JRNL REF J.BIOL.CHEM. V. 288 15442 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23569211 JRNL DOI 10.1074/JBC.M112.447185 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2142 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42851 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 168.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AK4, 1ZHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 10K, 0.2M NA TARTRATE, 10MM REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 118.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 118.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.60000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 118.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 118.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.60000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 118.80000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 118.80000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 30.60000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 118.80000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 118.80000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN E 187 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 219 O ARG A 256 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 129 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -126.65 61.19 REMARK 500 ASP A 122 129.20 -35.37 REMARK 500 TYR A 123 -70.99 -117.92 REMARK 500 ARG A 239 -4.68 84.39 REMARK 500 HIS B 31 124.29 -173.90 REMARK 500 PRO B 32 -174.64 -67.57 REMARK 500 TRP B 60 5.98 82.68 REMARK 500 LEU D 53 -51.20 -120.43 REMARK 500 ALA D 100 -176.46 -173.69 REMARK 500 SER D 147 -169.91 -127.45 REMARK 500 ASN D 205 0.59 86.57 REMARK 500 GLU D 210 -15.05 95.76 REMARK 500 ILE E 53 -68.78 -94.60 REMARK 500 TYR E 85 -8.01 77.21 REMARK 500 SER E 111 -156.61 -98.03 REMARK 500 THR E 112 3.73 -68.05 REMARK 500 GLN E 192 77.80 -117.95 REMARK 500 PRO E 193 -5.30 -57.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 83 OD1 REMARK 620 2 HIS B 84 O 74.4 REMARK 620 3 LEU B 87 O 96.1 76.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JRX RELATED DB: PDB DBREF 4JRY A 1 276 UNP C5MK56 C5MK56_HUMAN 25 300 DBREF 4JRY B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4JRY C 1 13 UNP Q3KSS8 BZLF1_EBVG 52 64 DBREF 4JRY D 1 216 PDB 4JRY 4JRY 1 216 DBREF 4JRY E 2 256 PDB 4JRY 4JRY 2 256 SEQADV 4JRY MET B 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 A 276 ILE PHE LYS THR ASN THR GLN THR TYR ARG GLU SER LEU SEQRES 7 A 276 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN ARG SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO VAL SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 13 LEU PRO GLU PRO LEU PRO GLN GLY GLN LEU THR ALA TYR SEQRES 1 D 201 GLU LEU LYS VAL GLU GLN ASN PRO LEU PHE LEU SER MET SEQRES 2 D 201 GLN GLU GLY LYS ASN TYR THR ILE TYR CYS ASN TYR SER SEQRES 3 D 201 THR THR SER ASP ARG LEU TYR TRP TYR ARG GLN ASP PRO SEQRES 4 D 201 GLY LYS SER LEU GLU SER LEU PHE VAL LEU LEU SER ASN SEQRES 5 D 201 GLY ALA VAL LYS GLN GLU GLY ARG LEU MET ALA SER LEU SEQRES 6 D 201 ASP THR LYS ALA ARG LEU SER THR LEU HIS ILE THR ALA SEQRES 7 D 201 ALA VAL HIS ASP LEU SER ALA THR TYR PHE CYS ALA VAL SEQRES 8 D 201 GLY GLY GLY SER ASN TYR GLN LEU ILE TRP GLY ALA GLY SEQRES 9 D 201 THR LYS LEU ILE ILE LYS PRO ASN ILE GLN ASN PRO ASP SEQRES 10 D 201 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 D 201 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 D 201 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 D 201 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 D 201 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 D 201 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 D 201 ASP THR PHE PHE PRO SER SEQRES 1 E 242 ALA GLY VAL THR GLN SER PRO THR HIS LEU ILE LYS THR SEQRES 2 E 242 ARG GLY GLN GLN VAL THR LEU ARG CYS SER PRO LYS SER SEQRES 3 E 242 GLY HIS ASP THR VAL SER TRP TYR GLN GLN ALA LEU GLY SEQRES 4 E 242 GLN GLY PRO GLN PHE ILE PHE GLN TYR TYR GLU GLU GLU SEQRES 5 E 242 GLU ARG GLN ARG GLY ASN PHE PRO ASP ARG PHE SER GLY SEQRES 6 E 242 HIS GLN PHE PRO ASN TYR SER SER GLU LEU ASN VAL ASN SEQRES 7 E 242 ALA LEU LEU LEU GLY ASP SER ALA LEU TYR LEU CYS ALA SEQRES 8 E 242 SER SER ARG THR GLY SER THR TYR GLU GLN TYR PHE GLY SEQRES 9 E 242 PRO GLY THR ARG LEU THR VAL THR GLU ASP LEU LYS ASN SEQRES 10 E 242 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 E 242 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 E 242 LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER SEQRES 13 E 242 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 E 242 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 E 242 ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER SEQRES 16 E 242 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 E 242 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 E 242 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 E 242 ALA GLU ALA TRP GLY ARG ALA ASP HET NA B 101 1 HET MG B 102 1 HET MG B 103 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 6 NA NA 1+ FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *124(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 PRO A 105 GLY A 107 5 3 HELIX 4 4 ASP A 137 ALA A 150 1 14 HELIX 5 5 ARG A 151 GLY A 162 1 12 HELIX 6 6 GLY A 162 GLY A 175 1 14 HELIX 7 7 GLY A 175 GLN A 180 1 6 HELIX 8 8 GLU A 253 TYR A 257 5 5 HELIX 9 9 VAL D 95 SER D 99 5 5 HELIX 10 10 ALA D 198 PHE D 203 1 6 HELIX 11 11 LEU E 95 SER E 99 5 5 HELIX 12 12 ASP E 128 VAL E 132 5 5 HELIX 13 13 SER E 143 GLN E 151 1 9 HELIX 14 14 ALA E 210 ASN E 215 1 6 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 A 8 SER A 4 MET A 12 -1 N THR A 10 O ILE A 23 SHEET 5 A 8 ILE A 94 LEU A 103 -1 O ILE A 95 N ALA A 11 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O TYR A 123 N SER A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 PRO A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 PRO A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 3 THR A 214 GLN A 218 0 SHEET 2 D 3 THR A 258 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 3 D 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 5 VAL D 4 ASN D 7 0 SHEET 2 H 5 TYR D 19 TYR D 25 -1 O TYR D 22 N ASN D 7 SHEET 3 H 5 LEU D 86 ILE D 91 -1 O ILE D 91 N TYR D 19 SHEET 4 H 5 LEU D 76 ASP D 81 -1 N ASP D 81 O LEU D 86 SHEET 5 H 5 VAL D 65 GLU D 68 -1 N GLU D 68 O LEU D 76 SHEET 1 I 5 PHE D 10 GLN D 14 0 SHEET 2 I 5 THR D 120 LYS D 125 1 O LYS D 125 N MET D 13 SHEET 3 I 5 THR D 101 GLY D 107 -1 N TYR D 102 O THR D 120 SHEET 4 I 5 ARG D 38 GLN D 44 -1 N TYR D 40 O ALA D 105 SHEET 5 I 5 LEU D 50 LEU D 56 -1 O LEU D 56 N LEU D 39 SHEET 1 J 4 PHE D 10 GLN D 14 0 SHEET 2 J 4 THR D 120 LYS D 125 1 O LYS D 125 N MET D 13 SHEET 3 J 4 THR D 101 GLY D 107 -1 N TYR D 102 O THR D 120 SHEET 4 J 4 LEU D 114 TRP D 116 -1 O ILE D 115 N VAL D 106 SHEET 1 K 8 VAL D 168 ILE D 170 0 SHEET 2 K 8 PHE D 183 SER D 192 -1 O TRP D 191 N TYR D 169 SHEET 3 K 8 VAL D 148 THR D 152 -1 N CYS D 149 O ALA D 190 SHEET 4 K 8 ALA D 134 ASP D 140 -1 N TYR D 136 O LEU D 150 SHEET 5 K 8 GLU E 136 GLU E 141 -1 O GLU E 141 N ARG D 139 SHEET 6 K 8 LYS E 152 PHE E 162 -1 O VAL E 156 N PHE E 140 SHEET 7 K 8 TYR E 200 SER E 209 -1 O TYR E 200 N PHE E 162 SHEET 8 K 8 VAL E 182 THR E 184 -1 N CYS E 183 O ARG E 205 SHEET 1 L 8 CYS D 174 MET D 178 0 SHEET 2 L 8 PHE D 183 SER D 192 -1 O PHE D 183 N MET D 178 SHEET 3 L 8 VAL D 148 THR D 152 -1 N CYS D 149 O ALA D 190 SHEET 4 L 8 ALA D 134 ASP D 140 -1 N TYR D 136 O LEU D 150 SHEET 5 L 8 GLU E 136 GLU E 141 -1 O GLU E 141 N ARG D 139 SHEET 6 L 8 LYS E 152 PHE E 162 -1 O VAL E 156 N PHE E 140 SHEET 7 L 8 TYR E 200 SER E 209 -1 O TYR E 200 N PHE E 162 SHEET 8 L 8 LEU E 189 LYS E 190 -1 N LEU E 189 O ALA E 201 SHEET 1 M 4 THR E 5 SER E 7 0 SHEET 2 M 4 VAL E 19 SER E 24 -1 O ARG E 22 N SER E 7 SHEET 3 M 4 SER E 87 VAL E 91 -1 O SER E 87 N CYS E 23 SHEET 4 M 4 PHE E 76 GLN E 80 -1 N SER E 77 O ASN E 90 SHEET 1 N 6 HIS E 10 LYS E 13 0 SHEET 2 N 6 THR E 121 VAL E 125 1 O THR E 124 N LYS E 13 SHEET 3 N 6 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 121 SHEET 4 N 6 THR E 38 GLN E 44 -1 N SER E 40 O ALA E 105 SHEET 5 N 6 GLN E 51 TYR E 57 -1 O ILE E 53 N TRP E 41 SHEET 6 N 6 GLU E 64 ARG E 68 -1 O GLU E 64 N TYR E 57 SHEET 1 O 4 HIS E 10 LYS E 13 0 SHEET 2 O 4 THR E 121 VAL E 125 1 O THR E 124 N LYS E 13 SHEET 3 O 4 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 121 SHEET 4 O 4 TYR E 116 PHE E 117 -1 O TYR E 116 N SER E 106 SHEET 1 P 4 LYS E 176 VAL E 178 0 SHEET 2 P 4 VAL E 167 VAL E 173 -1 N VAL E 173 O LYS E 176 SHEET 3 P 4 HIS E 219 PHE E 226 -1 O GLN E 223 N SER E 170 SHEET 4 P 4 GLN E 245 TRP E 252 -1 O GLN E 245 N PHE E 226 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.39 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.42 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.33 SSBOND 4 CYS D 23 CYS D 104 1555 1555 2.09 SSBOND 5 CYS D 149 CYS D 199 1555 1555 2.05 SSBOND 6 CYS D 174 CYS E 183 1555 1555 2.35 SSBOND 7 CYS E 23 CYS E 104 1555 1555 2.27 SSBOND 8 CYS E 157 CYS E 222 1555 1555 2.21 LINK OD1 ASN B 83 MG MG B 102 1555 1555 2.47 LINK O HIS B 84 MG MG B 102 1555 1555 2.69 LINK O LEU B 87 MG MG B 102 1555 1555 2.49 CISPEP 1 GLY A 1 SER A 2 0 1.20 CISPEP 2 TYR A 209 PRO A 210 0 -0.51 CISPEP 3 HIS B 31 PRO B 32 0 2.33 CISPEP 4 ASN D 7 PRO D 8 0 -3.85 CISPEP 5 ASP D 145 LYS D 146 0 -2.51 CISPEP 6 LYS D 146 SER D 147 0 -5.35 CISPEP 7 SER E 7 PRO E 8 0 -5.45 CISPEP 8 TYR E 163 PRO E 164 0 3.74 SITE 1 AC1 3 ASN B 83 HIS B 84 LEU B 87 CRYST1 237.600 237.600 61.200 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016340 0.00000