HEADER SIGNALING PROTEIN/SIGNALING PROTEIN 22-MAR-13 4JS0 TITLE COMPLEX OF CDC42 WITH THE CRIB-PR DOMAIN OF IRSP53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G25K GTP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN COMPND 9 2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: CRIB-PR DOMAIN; COMPND 12 SYNONYM: BAI-ASSOCIATED PROTEIN 2, BAI1-ASSOCIATED PROTEIN 2, PROTEIN COMPND 13 BAP2, FAS LIGAND-ASSOCIATED FACTOR 3, FLAF3, INSULIN RECEPTOR COMPND 14 SUBSTRATE P53/P58, IRS-58, IRSP53/58, INSULIN RECEPTOR SUBSTRATE COMPND 15 PROTEIN OF 53 KDA, IRSP53, INSULIN RECEPTOR SUBSTRATE P53; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC42; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB11; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS GTPASE BINDING DOMAIN, CRIB DOMAIN, CYTOSKELETON REGULATION, KEYWDS 2 SIGNALING PROTEIN-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.KAST,R.DOMINGUEZ REVDAT 4 28-FEB-24 4JS0 1 REMARK SEQADV LINK REVDAT 3 30-APR-14 4JS0 1 JRNL REVDAT 2 02-APR-14 4JS0 1 JRNL REVDAT 1 05-MAR-14 4JS0 0 JRNL AUTH D.J.KAST,C.YANG,A.DISANZA,M.BOCZKOWSKA,Y.MADASU,G.SCITA, JRNL AUTH 2 T.SVITKINA,R.DOMINGUEZ JRNL TITL MECHANISM OF IRSP53 INHIBITION AND COMBINATORIAL ACTIVATION JRNL TITL 2 BY CDC42 AND DOWNSTREAM EFFECTORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 413 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24584464 JRNL DOI 10.1038/NSMB.2781 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3019 - 3.2486 1.00 3023 153 0.1421 0.1857 REMARK 3 2 3.2486 - 2.5788 1.00 2836 141 0.1506 0.2050 REMARK 3 3 2.5788 - 2.2529 1.00 2816 161 0.1423 0.1878 REMARK 3 4 2.2529 - 2.0469 1.00 2783 145 0.1418 0.2286 REMARK 3 5 2.0469 - 1.9000 0.99 2747 154 0.1613 0.2210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1745 REMARK 3 ANGLE : 1.689 2397 REMARK 3 CHIRALITY : 0.082 275 REMARK 3 PLANARITY : 0.007 295 REMARK 3 DIHEDRAL : 17.174 663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2091 -25.0490 17.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.0958 T22: 0.2296 REMARK 3 T33: 0.1782 T12: -0.0226 REMARK 3 T13: -0.0145 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.0467 L22: 2.0030 REMARK 3 L33: 1.7518 L12: 0.1111 REMARK 3 L13: -0.2296 L23: 0.4162 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: -0.2878 S13: -0.1721 REMARK 3 S21: 0.0996 S22: -0.0042 S23: -0.3183 REMARK 3 S31: 0.0885 S32: 0.2539 S33: -0.0866 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 16:58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6733 -31.8544 13.6871 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.1717 REMARK 3 T33: 0.2768 T12: -0.0208 REMARK 3 T13: -0.0240 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 4.3433 L22: 1.1597 REMARK 3 L33: 3.1425 L12: 0.5967 REMARK 3 L13: 0.2473 L23: 0.6501 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.1377 S13: -0.2392 REMARK 3 S21: 0.0770 S22: -0.0049 S23: -0.4780 REMARK 3 S31: 0.1266 S32: 0.1658 S33: -0.0254 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 59:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7901 -26.1215 25.8649 REMARK 3 T TENSOR REMARK 3 T11: 0.2821 T22: 0.5397 REMARK 3 T33: 0.2168 T12: -0.1011 REMARK 3 T13: 0.0730 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 3.0561 L22: 8.5080 REMARK 3 L33: 1.7732 L12: -1.0744 REMARK 3 L13: 0.7674 L23: 0.9820 REMARK 3 S TENSOR REMARK 3 S11: -0.1125 S12: -0.5009 S13: -0.2845 REMARK 3 S21: 0.9678 S22: -0.0104 S23: 0.9241 REMARK 3 S31: 0.2730 S32: -0.7544 S33: 0.0839 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 72:122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2327 -18.8032 14.2244 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.1863 REMARK 3 T33: 0.1169 T12: -0.0271 REMARK 3 T13: 0.0078 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.0039 L22: 2.5899 REMARK 3 L33: 3.3161 L12: 0.5946 REMARK 3 L13: 0.8139 L23: 1.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.2914 S13: 0.1969 REMARK 3 S21: 0.0681 S22: 0.0311 S23: 0.0312 REMARK 3 S31: -0.1973 S32: -0.0880 S33: -0.0450 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 123:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2003 -19.0664 2.5943 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.2436 REMARK 3 T33: 0.1352 T12: -0.0486 REMARK 3 T13: -0.0015 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 3.2350 L22: 2.3994 REMARK 3 L33: 1.8242 L12: 0.0087 REMARK 3 L13: 0.5029 L23: 0.4121 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.1676 S13: 0.2149 REMARK 3 S21: -0.2723 S22: 0.1004 S23: 0.0275 REMARK 3 S31: -0.2261 S32: -0.1248 S33: -0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 165:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8060 -20.7967 8.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.2032 REMARK 3 T33: 0.1653 T12: -0.0497 REMARK 3 T13: 0.0070 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 4.1385 L22: 8.7135 REMARK 3 L33: 9.4291 L12: 3.0872 REMARK 3 L13: 2.7746 L23: 7.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.1618 S13: -0.0008 REMARK 3 S21: -0.1541 S22: 0.2934 S23: -0.4682 REMARK 3 S31: -0.1842 S32: 0.4941 S33: -0.3178 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 263:280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3343 -28.2573 13.1876 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.3350 REMARK 3 T33: 0.3489 T12: -0.0830 REMARK 3 T13: 0.0474 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.7191 L22: 3.1725 REMARK 3 L33: 6.7043 L12: -1.7821 REMARK 3 L13: -0.6478 L23: 0.1486 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.3680 S13: -0.1366 REMARK 3 S21: -0.0780 S22: -0.2439 S23: -0.5518 REMARK 3 S31: -0.2306 S32: 0.7127 S33: 0.2067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 281:286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7015 -32.7290 31.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.3223 T22: 0.6236 REMARK 3 T33: 0.2001 T12: -0.0466 REMARK 3 T13: -0.0160 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 8.8455 L22: 8.4890 REMARK 3 L33: 3.9540 L12: -2.3954 REMARK 3 L13: 5.5014 L23: 0.1389 REMARK 3 S TENSOR REMARK 3 S11: 0.2479 S12: -0.8971 S13: 0.0577 REMARK 3 S21: 0.6490 S22: -0.2238 S23: -0.2241 REMARK 3 S31: 0.9411 S32: 0.7572 S33: -0.0360 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 287:291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8462 -38.6962 20.8421 REMARK 3 T TENSOR REMARK 3 T11: 0.7089 T22: 0.7851 REMARK 3 T33: 0.5293 T12: -0.1521 REMARK 3 T13: 0.1311 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 2.9522 L22: 1.1929 REMARK 3 L33: 4.4596 L12: 0.7317 REMARK 3 L13: 0.8013 L23: -1.8353 REMARK 3 S TENSOR REMARK 3 S11: -0.7469 S12: 0.8359 S13: -0.9099 REMARK 3 S21: -1.2889 S22: 0.1525 S23: 0.2546 REMARK 3 S31: 1.6167 S32: -2.8036 S33: 0.5826 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9769 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHASER-MR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 4000, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 0.004M BETAIN HYDROCHLORIDE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.61500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.87500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.61500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.87500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.61500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.87500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.87500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 260 REMARK 465 SER B 261 REMARK 465 LYS B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 263 CB OG REMARK 470 ARG B 289 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH B 303 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -69.39 -100.86 REMARK 500 LYS A 96 -57.82 -134.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 204 REMARK 610 PE4 A 205 REMARK 610 PE4 A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 81.6 REMARK 620 3 GNP A 201 O2G 171.1 89.6 REMARK 620 4 GNP A 201 O1B 90.9 172.1 97.9 REMARK 620 5 HOH A 302 O 86.8 88.9 93.5 93.2 REMARK 620 6 HOH A 304 O 89.0 89.8 90.6 87.5 175.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 341 O REMARK 620 2 HOH A 346 O 83.4 REMARK 620 3 HOH A 372 O 87.7 89.0 REMARK 620 4 HOH A 384 O 99.7 175.6 94.2 REMARK 620 5 HOH A 385 O 161.4 86.2 107.5 89.9 REMARK 620 6 HOH A 414 O 75.7 77.3 159.5 100.4 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 206 DBREF 4JS0 A 1 178 UNP P60953 CDC42_HUMAN 1 178 DBREF 4JS0 B 260 291 UNP Q9UQB8 BAIP2_HUMAN 260 291 SEQADV 4JS0 VAL A 12 UNP P60953 GLY 12 ENGINEERED MUTATION SEQRES 1 A 178 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP VAL ALA SEQRES 2 A 178 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 178 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 A 178 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 A 178 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 178 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 178 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 A 178 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 A 178 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 A 178 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 A 178 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 A 178 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 A 178 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 A 178 ASP GLU ALA ILE LEU ALA ALA LEU GLU SEQRES 1 B 32 ALA SER LYS SER ASN LEU VAL ILE SER ASP PRO ILE PRO SEQRES 2 B 32 GLY ALA LYS PRO LEU PRO VAL PRO PRO GLU LEU ALA PRO SEQRES 3 B 32 PHE VAL GLY ARG MET SER HET GNP A 201 40 HET MG A 202 1 HET MG A 203 1 HET PE4 A 204 4 HET PE4 A 205 13 HET PE4 A 206 10 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 PE4 3(C16 H34 O8) FORMUL 9 HOH *151(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 GLN A 116 ARG A 120 5 5 HELIX 7 7 ASP A 122 ASN A 132 1 11 HELIX 8 8 THR A 138 LYS A 150 1 13 HELIX 9 9 GLY A 164 GLU A 178 1 15 HELIX 10 10 PRO B 280 VAL B 287 5 8 SHEET 1 A 6 PHE A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O LEU A 53 N VAL A 42 SHEET 3 A 6 THR A 3 GLY A 10 1 N CYS A 6 O GLY A 54 SHEET 4 A 6 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 5 A 6 PHE A 110 THR A 115 1 O VAL A 113 N VAL A 80 SHEET 6 A 6 TYR A 154 GLU A 156 1 O VAL A 155 N GLY A 114 LINK OG1 THR A 17 MG MG A 202 1555 1555 2.15 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.12 LINK O2G GNP A 201 MG MG A 202 1555 1555 1.96 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.09 LINK MG MG A 202 O HOH A 302 1555 1555 2.03 LINK MG MG A 202 O HOH A 304 1555 1555 2.14 LINK MG MG A 203 O HOH A 341 1555 1555 2.17 LINK MG MG A 203 O HOH A 346 1555 1555 2.09 LINK MG MG A 203 O HOH A 372 1555 1555 2.06 LINK MG MG A 203 O HOH A 384 1555 1555 1.99 LINK MG MG A 203 O HOH A 385 1555 1555 2.02 LINK MG MG A 203 O HOH A 414 1555 1555 2.11 CISPEP 1 GLY B 288 ARG B 289 0 -0.20 SITE 1 AC1 28 VAL A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC1 28 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC1 28 TYR A 32 PRO A 34 THR A 35 GLY A 60 SITE 4 AC1 28 GLN A 116 ASP A 118 LEU A 119 LYS A 128 SITE 5 AC1 28 SER A 158 ALA A 159 LEU A 160 MG A 202 SITE 6 AC1 28 HOH A 302 HOH A 304 HOH A 309 HOH A 333 SITE 7 AC1 28 HOH A 338 HOH A 355 HOH A 364 HOH A 373 SITE 1 AC2 5 THR A 17 THR A 35 GNP A 201 HOH A 302 SITE 2 AC2 5 HOH A 304 SITE 1 AC3 6 HOH A 341 HOH A 346 HOH A 372 HOH A 384 SITE 2 AC3 6 HOH A 385 HOH A 414 SITE 1 AC4 4 VAL A 85 LYS A 128 HOH A 364 HOH A 375 SITE 1 AC5 7 PHE A 90 GLU A 91 LYS A 94 ASP A 148 SITE 2 AC5 7 HOH A 371 HOH A 381 HOH A 382 SITE 1 AC6 4 THR A 24 ASN A 26 PRO B 270 PRO B 272 CRYST1 67.230 67.230 79.750 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012539 0.00000