HEADER TRANSFERASE 22-MAR-13 4JT2 TITLE STRUCTURE OF CLOSTRIDIUM THERMOCELLUM POLYNUCLEOTIDE KINASE BOUND TO TITLE 2 CTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPHOSPHOESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.78; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2768; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, P-LOOP PHOSPHOTRANSFERASE, POLYNUCLEOTIDE KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.DAS,L.K.WANG,P.SMITH,S.SHUMAN REVDAT 3 06-NOV-24 4JT2 1 REMARK SEQADV LINK REVDAT 2 18-DEC-13 4JT2 1 JRNL REVDAT 1 28-AUG-13 4JT2 0 JRNL AUTH U.DAS,L.K.WANG,P.SMITH,S.SHUMAN JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PHOSPHATE DONOR JRNL TITL 2 SPECIFICITY OF THE POLYNUCLEOTIDE KINASE COMPONENT OF THE JRNL TITL 3 BACTERIAL PNKPHEN1 RNA REPAIR SYSTEM. JRNL REF BIOCHEMISTRY V. 52 4734 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23721485 JRNL DOI 10.1021/BI400412X REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5453 - 4.7640 1.00 1861 159 0.1742 0.2087 REMARK 3 2 4.7640 - 3.7819 1.00 1751 150 0.1525 0.1803 REMARK 3 3 3.7819 - 3.3040 1.00 1745 151 0.1867 0.2444 REMARK 3 4 3.3040 - 3.0020 1.00 1711 147 0.1949 0.2494 REMARK 3 5 3.0020 - 2.7869 1.00 1714 146 0.1966 0.2729 REMARK 3 6 2.7869 - 2.6226 1.00 1712 148 0.2078 0.2286 REMARK 3 7 2.6226 - 2.4900 0.92 1570 136 0.2024 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2859 REMARK 3 ANGLE : 1.093 3869 REMARK 3 CHIRALITY : 0.064 438 REMARK 3 PLANARITY : 0.005 489 REMARK 3 DIHEDRAL : 16.159 1113 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 0:20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7947 25.9952 75.8771 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2247 REMARK 3 T33: 0.2188 T12: 0.0356 REMARK 3 T13: -0.0048 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.0291 L22: 0.4888 REMARK 3 L33: 1.5089 L12: 0.2912 REMARK 3 L13: -0.9852 L23: -0.2772 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: 0.0631 S13: 0.2792 REMARK 3 S21: -0.1092 S22: 0.1618 S23: 0.0920 REMARK 3 S31: 0.4995 S32: 0.0169 S33: -0.0157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 21:50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7807 21.8585 91.0050 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.2167 REMARK 3 T33: 0.2676 T12: 0.1178 REMARK 3 T13: 0.0026 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.3620 L22: 1.2509 REMARK 3 L33: 0.5101 L12: 0.3698 REMARK 3 L13: 0.1349 L23: 0.3022 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0611 S13: 0.0774 REMARK 3 S21: 0.1798 S22: -0.0874 S23: -0.0102 REMARK 3 S31: 0.2089 S32: 0.2604 S33: -0.0080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 51:106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9785 33.8448 86.3555 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.2026 REMARK 3 T33: 0.1983 T12: 0.0065 REMARK 3 T13: 0.0097 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.3285 L22: 0.1463 REMARK 3 L33: 0.2406 L12: -0.1550 REMARK 3 L13: 0.0437 L23: -0.1669 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: -0.1668 S13: -0.0742 REMARK 3 S21: 0.0205 S22: -0.0188 S23: 0.0440 REMARK 3 S31: -0.1234 S32: 0.1707 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 107:157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1228 21.7277 79.7926 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.1700 REMARK 3 T33: 0.2611 T12: -0.0376 REMARK 3 T13: -0.0020 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0540 L22: 0.3267 REMARK 3 L33: 0.5724 L12: 0.0828 REMARK 3 L13: -0.2290 L23: 0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0871 S13: -0.0021 REMARK 3 S21: -0.0454 S22: -0.0895 S23: 0.1109 REMARK 3 S31: 0.1713 S32: 0.0414 S33: -0.0313 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 158:170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4941 20.8772 70.8307 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.4011 REMARK 3 T33: 0.2283 T12: 0.1549 REMARK 3 T13: 0.0022 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 0.2072 L22: 0.0666 REMARK 3 L33: 0.3357 L12: 0.1043 REMARK 3 L13: -0.2619 L23: -0.1459 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.0693 S13: 0.0042 REMARK 3 S21: -0.3339 S22: -0.1257 S23: -0.1026 REMARK 3 S31: 0.3638 S32: 0.3951 S33: -0.1798 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 0:106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0180 35.3266 49.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2143 REMARK 3 T33: 0.1812 T12: 0.0301 REMARK 3 T13: -0.0313 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.1642 L22: 0.6746 REMARK 3 L33: 1.0038 L12: 0.3439 REMARK 3 L13: -1.0408 L23: -0.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: 0.1255 S13: -0.1133 REMARK 3 S21: -0.0143 S22: -0.0334 S23: -0.0550 REMARK 3 S31: 0.1400 S32: 0.0319 S33: 0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 107:169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3492 36.9154 56.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.2691 REMARK 3 T33: 0.2154 T12: -0.0171 REMARK 3 T13: -0.0306 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0902 L22: 0.9976 REMARK 3 L33: 1.1330 L12: -0.2747 REMARK 3 L13: -0.1240 L23: -0.0894 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.0220 S13: -0.1072 REMARK 3 S21: -0.0828 S22: -0.0606 S23: 0.1319 REMARK 3 S31: 0.0315 S32: -0.1753 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 0:47 OR RESSEQ 53:167 REMARK 3 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 0:47 OR RESSEQ 53:167 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1282 REMARK 3 RMSD : 0.060 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -999.00 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT REFINEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 100MM MGCL2, 16 REMARK 280 -18% PEG 3350, 2MM CTP, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.77300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.77300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 47 O HOH A 362 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN B 70 NH2 ARG B 131 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 22 OG REMARK 620 2 CTP A 202 O3G 167.1 REMARK 620 3 CTP A 202 O2B 91.3 88.4 REMARK 620 4 HOH A 301 O 84.6 82.7 98.6 REMARK 620 5 HOH A 330 O 84.3 94.6 172.5 75.1 REMARK 620 6 HOH A 366 O 95.9 97.0 93.4 167.9 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 CTP B1001 O2B 94.0 REMARK 620 3 CTP B1001 O3G 163.6 87.8 REMARK 620 4 HOH B1122 O 81.8 168.0 93.2 REMARK 620 5 HOH B1144 O 101.5 93.4 94.6 98.4 REMARK 620 6 HOH B1146 O 81.6 95.1 82.1 73.3 170.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JST RELATED DB: PDB REMARK 900 RELATED ID: 4JSY RELATED DB: PDB REMARK 900 RELATED ID: 4JT4 RELATED DB: PDB REMARK 900 RELATED ID: 4GP7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 4GP6 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ADP DBREF 4JT2 A 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 DBREF 4JT2 B 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 SEQADV 4JT2 SER A 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JT2 MSE A 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JT2 MSE A 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQADV 4JT2 SER B 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JT2 MSE B 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JT2 MSE B 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQRES 1 A 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 A 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 A 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 A 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 A 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 A 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 A 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 A 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 A 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 A 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 A 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 A 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 A 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 A 171 GLN PRO SEQRES 1 B 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 B 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 B 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 B 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 B 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 B 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 B 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 B 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 B 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 B 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 B 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 B 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 B 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 B 171 GLN PRO MODRES 4JT2 MSE A 1 MET SELENOMETHIONINE MODRES 4JT2 MSE A 44 MET SELENOMETHIONINE MODRES 4JT2 MSE A 137 MET SELENOMETHIONINE MODRES 4JT2 MSE B 1 MET SELENOMETHIONINE MODRES 4JT2 MSE B 44 MET SELENOMETHIONINE MODRES 4JT2 MSE B 137 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 137 8 HET MSE B 1 8 HET MSE B 44 8 HET MSE B 137 8 HET MG A 201 1 HET CTP A 202 29 HET CTP B1001 29 HET MG B1002 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 CTP 2(C9 H16 N3 O14 P3) FORMUL 7 HOH *126(H2 O) HELIX 1 1 GLY A 20 PHE A 29 1 10 HELIX 2 2 LYS A 30 THR A 32 5 3 HELIX 3 3 SER A 37 SER A 45 1 9 HELIX 4 4 ASP A 50 THR A 52 5 3 HELIX 5 5 VAL A 53 LEU A 71 1 19 HELIX 6 6 GLN A 83 TYR A 97 1 15 HELIX 7 7 PRO A 109 ARG A 120 1 12 HELIX 8 8 GLU A 126 ILE A 141 1 16 HELIX 9 9 GLY A 143 GLY A 148 1 6 HELIX 10 10 SER A 157 GLU A 163 1 7 HELIX 11 11 GLY B 20 PHE B 29 1 10 HELIX 12 12 LYS B 30 THR B 32 5 3 HELIX 13 13 SER B 37 SER B 45 1 9 HELIX 14 14 ASP B 50 THR B 52 5 3 HELIX 15 15 VAL B 53 LEU B 71 1 19 HELIX 16 16 GLN B 83 TYR B 97 1 15 HELIX 17 17 PRO B 109 ARG B 120 1 12 HELIX 18 18 GLU B 126 ILE B 141 1 16 HELIX 19 19 GLY B 143 GLY B 148 1 6 HELIX 20 20 SER B 157 GLU B 163 1 7 SHEET 1 A 2 MSE A 1 PRO A 6 0 SHEET 2 A 2 VAL A 164 GLN A 169 1 O GLU A 167 N LEU A 3 SHEET 1 B 5 VAL A 34 SER A 36 0 SHEET 2 B 5 THR A 75 ASP A 78 1 O VAL A 76 N ILE A 35 SHEET 3 B 5 SER A 9 ILE A 14 1 N VAL A 11 O VAL A 77 SHEET 4 B 5 PHE A 100 PHE A 106 1 O VAL A 102 N VAL A 12 SHEET 5 B 5 TYR A 151 LEU A 155 1 O TYR A 153 N VAL A 105 SHEET 1 C 2 MSE B 1 PRO B 6 0 SHEET 2 C 2 VAL B 164 GLN B 169 1 O GLU B 167 N LEU B 3 SHEET 1 D 5 VAL B 34 SER B 36 0 SHEET 2 D 5 THR B 75 ASP B 78 1 O VAL B 76 N ILE B 35 SHEET 3 D 5 SER B 9 ILE B 14 1 N VAL B 11 O VAL B 77 SHEET 4 D 5 PHE B 100 PHE B 106 1 O VAL B 102 N VAL B 12 SHEET 5 D 5 TYR B 151 LEU B 155 1 O TYR B 153 N VAL B 105 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LEU A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N SER A 45 1555 1555 1.33 LINK C GLN A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N LYS A 138 1555 1555 1.33 LINK C SER B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C LEU B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N SER B 45 1555 1555 1.33 LINK C GLN B 136 N MSE B 137 1555 1555 1.33 LINK C MSE B 137 N LYS B 138 1555 1555 1.33 LINK OG SER A 22 MG MG A 201 1555 1555 2.19 LINK MG MG A 201 O3G CTP A 202 1555 1555 1.84 LINK MG MG A 201 O2B CTP A 202 1555 1555 1.97 LINK MG MG A 201 O HOH A 301 1555 1555 1.98 LINK MG MG A 201 O HOH A 330 1555 1555 2.08 LINK MG MG A 201 O HOH A 366 1555 1555 1.85 LINK OG SER B 22 MG MG B1002 1555 1555 2.08 LINK O2B CTP B1001 MG MG B1002 1555 1555 1.94 LINK O3G CTP B1001 MG MG B1002 1555 1555 1.97 LINK MG MG B1002 O HOH B1122 1555 1555 2.22 LINK MG MG B1002 O HOH B1144 1555 1555 2.10 LINK MG MG B1002 O HOH B1146 1555 1555 2.14 SITE 1 AC1 6 SER A 22 ARG A 123 CTP A 202 HOH A 301 SITE 2 AC1 6 HOH A 330 HOH A 366 SITE 1 AC2 18 SER A 16 SER A 17 GLY A 18 SER A 19 SITE 2 AC2 18 GLY A 20 LYS A 21 SER A 22 THR A 23 SITE 3 AC2 18 ARG A 116 ARG A 120 ARG A 123 MG A 201 SITE 4 AC2 18 HOH A 301 HOH A 310 HOH A 317 HOH A 330 SITE 5 AC2 18 HOH A 336 HOH A 366 SITE 1 AC3 16 SER B 17 GLY B 18 GLY B 20 LYS B 21 SITE 2 AC3 16 SER B 22 THR B 23 ARG B 116 ARG B 120 SITE 3 AC3 16 ARG B 123 MG B1002 HOH B1122 HOH B1130 SITE 4 AC3 16 HOH B1135 HOH B1144 HOH B1146 HOH B1147 SITE 1 AC4 6 SER B 22 ARG B 123 CTP B1001 HOH B1122 SITE 2 AC4 6 HOH B1144 HOH B1146 CRYST1 45.306 66.781 119.546 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000