HEADER PROTEIN BINDING 24-MAR-13 4JUE TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM UBIQUITIN CONJUGATING TITLE 2 ENZYME UBC9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CONJUGATING ENZYME UBC9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF3D7_0915100, PFI0740C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX4T-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: WTPFUBC9-PGEX4T1 KEYWDS SUMO, E2 ENZYME, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.H.REITER,L.E.BOUCHER,J.BOSCH,J.M.MATUNIS REVDAT 5 03-APR-24 4JUE 1 REMARK REVDAT 4 28-FEB-24 4JUE 1 REMARK SEQADV REVDAT 3 15-NOV-17 4JUE 1 REMARK REVDAT 2 16-OCT-13 4JUE 1 JRNL REVDAT 1 21-AUG-13 4JUE 0 JRNL AUTH K.REITER,D.MUKHOPADHYAY,H.ZHANG,L.E.BOUCHER,N.KUMAR,J.BOSCH, JRNL AUTH 2 M.J.MATUNIS JRNL TITL IDENTIFICATION OF BIOCHEMICALLY DISTINCT PROPERTIES OF THE JRNL TITL 2 SMALL UBIQUITIN-RELATED MODIFIER (SUMO) CONJUGATION PATHWAY JRNL TITL 3 IN PLASMODIUM FALCIPARUM. JRNL REF J.BIOL.CHEM. V. 288 27724 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23943616 JRNL DOI 10.1074/JBC.M113.498410 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 53373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1385 - 4.9165 0.94 2880 154 0.1391 0.1825 REMARK 3 2 4.9165 - 3.9117 0.95 2893 140 0.1054 0.1434 REMARK 3 3 3.9117 - 3.4200 0.94 2851 141 0.1136 0.1566 REMARK 3 4 3.4200 - 3.1085 0.93 2804 169 0.1239 0.1585 REMARK 3 5 3.1085 - 2.8864 0.94 2758 146 0.1333 0.1738 REMARK 3 6 2.8864 - 2.7167 0.94 2878 155 0.1356 0.1917 REMARK 3 7 2.7167 - 2.5809 0.94 2795 164 0.1525 0.1845 REMARK 3 8 2.5809 - 2.4687 0.93 2795 152 0.1555 0.1949 REMARK 3 9 2.4687 - 2.3739 0.94 2766 158 0.1627 0.2065 REMARK 3 10 2.3739 - 2.2921 0.93 2819 155 0.1625 0.2510 REMARK 3 11 2.2921 - 2.2205 0.94 2730 136 0.1714 0.2076 REMARK 3 12 2.2205 - 2.1571 0.94 2888 134 0.1759 0.2249 REMARK 3 13 2.1571 - 2.1004 0.93 2751 137 0.1793 0.2085 REMARK 3 14 2.1004 - 2.0492 0.94 2756 133 0.1927 0.2351 REMARK 3 15 2.0492 - 2.0026 0.92 2820 167 0.1921 0.2339 REMARK 3 16 2.0026 - 1.9600 0.86 2552 145 0.2017 0.2147 REMARK 3 17 1.9600 - 1.9209 0.75 2183 105 0.2215 0.2831 REMARK 3 18 1.9209 - 1.8847 0.65 1958 117 0.2330 0.2612 REMARK 3 19 1.8847 - 1.8510 0.58 1755 101 0.2377 0.3308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4900 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5408 REMARK 3 ANGLE : 1.599 7342 REMARK 3 CHIRALITY : 0.053 753 REMARK 3 PLANARITY : 0.010 961 REMARK 3 DIHEDRAL : 13.227 2153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53373 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, BALBES REMARK 200 STARTING MODEL: BALBES AUTOMATIC SELECTION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NAF, 20% PEG3350 CRYO: 30% REMARK 280 PEG3350, 10% GLYCEROL, 0.2M NAF, 100MM GLYCINE, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.19500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 470 MET C 1 CG SD CE REMARK 470 MET D 1 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 49 NZ REMARK 480 LEU A 135 CG CD2 REMARK 480 LYS A 150 CD CE REMARK 480 LYS B 17 CE NZ REMARK 480 LYS B 44 NZ REMARK 480 LYS B 49 CG CD CE NZ REMARK 480 ASN B 126 OD1 REMARK 480 PHE B 134 CE1 REMARK 480 LYS B 149 NZ REMARK 480 GLU C 14 OE1 REMARK 480 ARG C 16 NH2 REMARK 480 LYS C 17 CE REMARK 480 LYS C 44 CD CE NZ REMARK 480 LYS C 74 CE REMARK 480 PRO C 125 CG REMARK 480 PHE C 134 CE1 REMARK 480 LYS C 146 CD REMARK 480 LYS C 150 CE REMARK 480 ASP C 159 OXT REMARK 480 LYS D 17 NZ REMARK 480 LYS D 150 CE REMARK 480 ASP D 159 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR D 68 CD PRO D 69 1.78 REMARK 500 O HOH A 305 O HOH A 491 1.94 REMARK 500 O HOH D 226 O HOH D 477 1.94 REMARK 500 OD2 ASP C 159 O HOH C 227 1.99 REMARK 500 O HOH D 365 O HOH D 388 2.00 REMARK 500 O HOH C 290 O HOH C 365 2.02 REMARK 500 O HOH D 322 O HOH D 484 2.03 REMARK 500 O HOH D 265 O HOH D 363 2.04 REMARK 500 O HOH B 237 O HOH B 356 2.05 REMARK 500 O HOH D 335 O HOH D 401 2.06 REMARK 500 O HOH B 307 O HOH B 350 2.07 REMARK 500 O HOH C 316 O HOH C 321 2.07 REMARK 500 O HOH A 322 O HOH C 335 2.07 REMARK 500 O HOH A 392 O HOH A 402 2.07 REMARK 500 OG SER A 70 O HOH A 291 2.08 REMARK 500 O HOH A 263 O HOH A 271 2.08 REMARK 500 O ASN D 85 O HOH D 485 2.09 REMARK 500 O HOH B 344 O HOH B 377 2.09 REMARK 500 O HOH B 322 O HOH B 368 2.09 REMARK 500 O HOH D 263 O HOH D 327 2.10 REMARK 500 O HOH A 372 O HOH A 483 2.10 REMARK 500 O HOH C 208 O HOH C 468 2.10 REMARK 500 O MET A 30 O HOH A 471 2.10 REMARK 500 O HOH C 212 O HOH C 461 2.11 REMARK 500 O HOH C 294 O HOH C 447 2.11 REMARK 500 O HOH C 402 O HOH C 408 2.11 REMARK 500 O HOH A 342 O HOH A 454 2.11 REMARK 500 O HOH D 327 O HOH D 392 2.12 REMARK 500 OG SER B 143 O HOH B 422 2.12 REMARK 500 O HOH A 290 O HOH A 359 2.12 REMARK 500 O HOH A 260 O HOH A 365 2.12 REMARK 500 O HOH B 414 O HOH B 431 2.13 REMARK 500 O SER C 2 O HOH C 233 2.13 REMARK 500 O HOH D 229 O HOH D 271 2.13 REMARK 500 O HOH B 241 O HOH B 351 2.14 REMARK 500 OD2 ASP B 140 O HOH B 349 2.14 REMARK 500 O HOH C 228 O HOH C 467 2.14 REMARK 500 O GLY A 51 O HOH A 279 2.14 REMARK 500 OG SER C 2 OE1 GLU C 66 2.14 REMARK 500 O HOH D 332 O HOH D 355 2.15 REMARK 500 O HOH C 337 O HOH C 461 2.15 REMARK 500 O HOH B 307 O HOH B 347 2.15 REMARK 500 O HOH C 450 O HOH C 453 2.15 REMARK 500 O HOH A 468 O HOH A 488 2.15 REMARK 500 O HOH D 360 O HOH D 390 2.15 REMARK 500 O HOH B 393 O HOH B 435 2.16 REMARK 500 O HOH D 302 O HOH D 322 2.16 REMARK 500 OE1 GLN C 130 O HOH C 326 2.16 REMARK 500 O HOH D 268 O HOH D 293 2.16 REMARK 500 O HOH C 280 O HOH C 468 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 78 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 159 OG SER D 24 1556 1.98 REMARK 500 O HOH C 258 O HOH C 447 1455 2.05 REMARK 500 O HOH D 282 O HOH D 468 1455 2.12 REMARK 500 NH2 ARG C 16 O HOH D 467 1656 2.12 REMARK 500 O HOH D 226 O HOH D 249 1455 2.16 REMARK 500 OG SER B 106 O HOH B 277 1455 2.17 REMARK 500 O HOH A 342 O HOH C 383 1455 2.17 REMARK 500 NE1 TRP D 15 O HOH C 466 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 69 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO B 69 C - N - CD ANGL. DEV. = -21.6 DEGREES REMARK 500 LYS B 158 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 PRO C 69 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO C 69 C - N - CD ANGL. DEV. = -29.4 DEGREES REMARK 500 PRO D 69 C - N - CA ANGL. DEV. = 45.9 DEGREES REMARK 500 PRO D 69 C - N - CD ANGL. DEV. = -50.5 DEGREES REMARK 500 PRO D 69 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 101 -101.77 -122.36 REMARK 500 GLU B 101 -98.50 -121.00 REMARK 500 SER B 127 62.66 -119.80 REMARK 500 SER C 2 -39.83 -150.58 REMARK 500 ILE C 3 -2.26 33.81 REMARK 500 GLU C 101 -101.41 -121.50 REMARK 500 PRO D 69 -35.64 -171.78 REMARK 500 GLU D 101 -98.66 -122.26 REMARK 500 SER D 127 66.57 -117.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 68 PRO A 69 86.26 REMARK 500 TYR B 68 PRO B 69 83.76 REMARK 500 LYS B 158 ASP B 159 -146.25 REMARK 500 TYR C 68 PRO C 69 92.44 REMARK 500 TYR D 68 PRO D 69 124.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M1N RELATED DB: PDB DBREF 4JUE A 1 159 UNP Q8I301 Q8I301_PLAF7 1 159 DBREF 4JUE B 1 159 UNP Q8I301 Q8I301_PLAF7 1 159 DBREF 4JUE C 1 159 UNP Q8I301 Q8I301_PLAF7 1 159 DBREF 4JUE D 1 159 UNP Q8I301 Q8I301_PLAF7 1 159 SEQADV 4JUE GLY A -1 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE SER A 0 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE GLY B -1 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE SER B 0 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE GLY C -1 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE SER C 0 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE GLY D -1 UNP Q8I301 EXPRESSION TAG SEQADV 4JUE SER D 0 UNP Q8I301 EXPRESSION TAG SEQRES 1 A 161 GLY SER MET SER ILE ALA LYS LYS ARG LEU ALA GLN GLU SEQRES 2 A 161 ARG ALA GLU TRP ARG LYS ASP HIS PRO ALA GLY PHE SER SEQRES 3 A 161 ALA LYS TYR SER PRO MET SER ASP GLY LYS GLY LEU ASP SEQRES 4 A 161 ILE MET LYS TRP ILE CYS LYS ILE PRO GLY LYS LYS GLY SEQRES 5 A 161 GLY LEU TRP GLU GLY GLY GLU TYR PRO LEU THR MET GLU SEQRES 6 A 161 PHE THR GLU ASP TYR PRO SER LYS PRO PRO LYS CYS LYS SEQRES 7 A 161 PHE THR THR VAL LEU PHE HIS PRO ASN ILE TYR PRO SER SEQRES 8 A 161 GLY THR VAL CYS LEU SER ILE LEU ASN GLU ASP GLU ASP SEQRES 9 A 161 TRP LYS PRO SER ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 A 161 ILE GLN ASP LEU LEU ASP ASN PRO ASN PRO ASN SER PRO SEQRES 11 A 161 ALA GLN ALA GLU PRO PHE LEU LEU TYR GLN GLN ASP ARG SEQRES 12 A 161 ASP SER TYR GLU LYS LYS VAL LYS LYS GLN ALA ILE GLU SEQRES 13 A 161 PHE ARG PRO LYS ASP SEQRES 1 B 161 GLY SER MET SER ILE ALA LYS LYS ARG LEU ALA GLN GLU SEQRES 2 B 161 ARG ALA GLU TRP ARG LYS ASP HIS PRO ALA GLY PHE SER SEQRES 3 B 161 ALA LYS TYR SER PRO MET SER ASP GLY LYS GLY LEU ASP SEQRES 4 B 161 ILE MET LYS TRP ILE CYS LYS ILE PRO GLY LYS LYS GLY SEQRES 5 B 161 GLY LEU TRP GLU GLY GLY GLU TYR PRO LEU THR MET GLU SEQRES 6 B 161 PHE THR GLU ASP TYR PRO SER LYS PRO PRO LYS CYS LYS SEQRES 7 B 161 PHE THR THR VAL LEU PHE HIS PRO ASN ILE TYR PRO SER SEQRES 8 B 161 GLY THR VAL CYS LEU SER ILE LEU ASN GLU ASP GLU ASP SEQRES 9 B 161 TRP LYS PRO SER ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 B 161 ILE GLN ASP LEU LEU ASP ASN PRO ASN PRO ASN SER PRO SEQRES 11 B 161 ALA GLN ALA GLU PRO PHE LEU LEU TYR GLN GLN ASP ARG SEQRES 12 B 161 ASP SER TYR GLU LYS LYS VAL LYS LYS GLN ALA ILE GLU SEQRES 13 B 161 PHE ARG PRO LYS ASP SEQRES 1 C 161 GLY SER MET SER ILE ALA LYS LYS ARG LEU ALA GLN GLU SEQRES 2 C 161 ARG ALA GLU TRP ARG LYS ASP HIS PRO ALA GLY PHE SER SEQRES 3 C 161 ALA LYS TYR SER PRO MET SER ASP GLY LYS GLY LEU ASP SEQRES 4 C 161 ILE MET LYS TRP ILE CYS LYS ILE PRO GLY LYS LYS GLY SEQRES 5 C 161 GLY LEU TRP GLU GLY GLY GLU TYR PRO LEU THR MET GLU SEQRES 6 C 161 PHE THR GLU ASP TYR PRO SER LYS PRO PRO LYS CYS LYS SEQRES 7 C 161 PHE THR THR VAL LEU PHE HIS PRO ASN ILE TYR PRO SER SEQRES 8 C 161 GLY THR VAL CYS LEU SER ILE LEU ASN GLU ASP GLU ASP SEQRES 9 C 161 TRP LYS PRO SER ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 C 161 ILE GLN ASP LEU LEU ASP ASN PRO ASN PRO ASN SER PRO SEQRES 11 C 161 ALA GLN ALA GLU PRO PHE LEU LEU TYR GLN GLN ASP ARG SEQRES 12 C 161 ASP SER TYR GLU LYS LYS VAL LYS LYS GLN ALA ILE GLU SEQRES 13 C 161 PHE ARG PRO LYS ASP SEQRES 1 D 161 GLY SER MET SER ILE ALA LYS LYS ARG LEU ALA GLN GLU SEQRES 2 D 161 ARG ALA GLU TRP ARG LYS ASP HIS PRO ALA GLY PHE SER SEQRES 3 D 161 ALA LYS TYR SER PRO MET SER ASP GLY LYS GLY LEU ASP SEQRES 4 D 161 ILE MET LYS TRP ILE CYS LYS ILE PRO GLY LYS LYS GLY SEQRES 5 D 161 GLY LEU TRP GLU GLY GLY GLU TYR PRO LEU THR MET GLU SEQRES 6 D 161 PHE THR GLU ASP TYR PRO SER LYS PRO PRO LYS CYS LYS SEQRES 7 D 161 PHE THR THR VAL LEU PHE HIS PRO ASN ILE TYR PRO SER SEQRES 8 D 161 GLY THR VAL CYS LEU SER ILE LEU ASN GLU ASP GLU ASP SEQRES 9 D 161 TRP LYS PRO SER ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 D 161 ILE GLN ASP LEU LEU ASP ASN PRO ASN PRO ASN SER PRO SEQRES 11 D 161 ALA GLN ALA GLU PRO PHE LEU LEU TYR GLN GLN ASP ARG SEQRES 12 D 161 ASP SER TYR GLU LYS LYS VAL LYS LYS GLN ALA ILE GLU SEQRES 13 D 161 PHE ARG PRO LYS ASP FORMUL 5 HOH *1137(H2 O) HELIX 1 1 SER A 2 ASP A 18 1 17 HELIX 2 2 LEU A 94 ASN A 98 5 5 HELIX 3 3 THR A 108 ASN A 122 1 15 HELIX 4 4 GLN A 130 ASP A 140 1 11 HELIX 5 5 ASP A 140 PHE A 155 1 16 HELIX 6 6 ILE B 3 ASP B 18 1 16 HELIX 7 7 LEU B 94 ASN B 98 5 5 HELIX 8 8 THR B 108 ASN B 122 1 15 HELIX 9 9 GLN B 130 ASP B 140 1 11 HELIX 10 10 ASP B 140 PHE B 155 1 16 HELIX 11 11 ILE C 3 ASP C 18 1 16 HELIX 12 12 LEU C 94 ASN C 98 5 5 HELIX 13 13 THR C 108 ASN C 122 1 15 HELIX 14 14 GLN C 130 ASP C 140 1 11 HELIX 15 15 ASP C 140 PHE C 155 1 16 HELIX 16 16 SER D 2 ASP D 18 1 17 HELIX 17 17 LEU D 94 ASN D 98 5 5 HELIX 18 18 THR D 108 ASN D 122 1 15 HELIX 19 19 GLN D 130 ASP D 140 1 11 HELIX 20 20 ASP D 140 PHE D 155 1 16 SHEET 1 A 4 SER A 24 PRO A 29 0 SHEET 2 A 4 LEU A 36 PRO A 46 -1 O ILE A 42 N LYS A 26 SHEET 3 A 4 GLU A 57 GLU A 63 -1 O LEU A 60 N CYS A 43 SHEET 4 A 4 LYS A 74 PHE A 77 -1 O LYS A 76 N THR A 61 SHEET 1 B 4 SER B 24 PRO B 29 0 SHEET 2 B 4 LEU B 36 PRO B 46 -1 O ASP B 37 N SER B 28 SHEET 3 B 4 GLU B 57 GLU B 63 -1 O TYR B 58 N ILE B 45 SHEET 4 B 4 LYS B 74 PHE B 77 -1 O LYS B 74 N GLU B 63 SHEET 1 C 4 SER C 24 PRO C 29 0 SHEET 2 C 4 LEU C 36 PRO C 46 -1 O ILE C 42 N LYS C 26 SHEET 3 C 4 GLU C 57 GLU C 63 -1 O LEU C 60 N CYS C 43 SHEET 4 C 4 LYS C 74 PHE C 77 -1 O LYS C 76 N THR C 61 SHEET 1 D 4 SER D 24 PRO D 29 0 SHEET 2 D 4 LEU D 36 PRO D 46 -1 O ASP D 37 N SER D 28 SHEET 3 D 4 GLU D 57 GLU D 63 -1 O LEU D 60 N CYS D 43 SHEET 4 D 4 LYS D 74 PHE D 77 -1 O LYS D 76 N THR D 61 CISPEP 1 LYS B 158 ASP B 159 0 -22.94 CISPEP 2 LYS C 158 ASP C 159 0 24.25 CRYST1 28.870 94.390 124.890 90.00 90.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034638 0.000000 0.000012 0.00000 SCALE2 0.000000 0.010594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008007 0.00000