HEADER ISOMERASE 25-MAR-13 4JUU TITLE CRYSTAL STRUCTURE OF A PUTATIVE HYDROXYPROLINE EPIMERASE FROM TITLE 2 XANTHOMONAS CAMPESTRIS (TARGET EFI-506516) WITH BOUND PHOSPHATE AND TITLE 3 UNKNOWN LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 190485; SOURCE 4 STRAIN: CAMPESTRIS STR. ATCC 33913; SOURCE 5 GENE: XCC2415; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 M.STEAD,B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, AUTHOR 4 ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4JUU 1 REMARK SEQADV REVDAT 1 17-APR-13 4JUU 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,M.STEAD,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE HYDROXYPROLINE EPIMERASE JRNL TITL 2 FROM XANTHOMONAS CAMPESTRIS (TARGET EFI-506516) WITH BOUND JRNL TITL 3 PHOSPHATE AND UNKNOWN LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 70611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3880 - 5.1092 0.98 2851 165 0.1964 0.2208 REMARK 3 2 5.1092 - 4.0584 1.00 2769 155 0.1272 0.1556 REMARK 3 3 4.0584 - 3.5463 1.00 2748 134 0.1394 0.1483 REMARK 3 4 3.5463 - 3.2225 1.00 2696 162 0.1514 0.1693 REMARK 3 5 3.2225 - 2.9917 1.00 2708 165 0.1511 0.1699 REMARK 3 6 2.9917 - 2.8154 1.00 2707 150 0.1609 0.1816 REMARK 3 7 2.8154 - 2.6745 1.00 2695 137 0.1499 0.2148 REMARK 3 8 2.6745 - 2.5582 1.00 2703 135 0.1464 0.1718 REMARK 3 9 2.5582 - 2.4597 1.00 2684 138 0.1474 0.1830 REMARK 3 10 2.4597 - 2.3749 1.00 2655 145 0.1369 0.1900 REMARK 3 11 2.3749 - 2.3007 1.00 2694 128 0.1320 0.1748 REMARK 3 12 2.3007 - 2.2349 1.00 2695 142 0.1396 0.1707 REMARK 3 13 2.2349 - 2.1761 1.00 2636 142 0.1350 0.1677 REMARK 3 14 2.1761 - 2.1230 1.00 2661 148 0.1284 0.1587 REMARK 3 15 2.1230 - 2.0748 1.00 2672 130 0.1357 0.1909 REMARK 3 16 2.0748 - 2.0306 0.99 2663 128 0.1379 0.1621 REMARK 3 17 2.0306 - 1.9900 1.00 2656 156 0.1510 0.2128 REMARK 3 18 1.9900 - 1.9525 1.00 2655 132 0.1597 0.2347 REMARK 3 19 1.9525 - 1.9176 0.99 2660 144 0.1643 0.2035 REMARK 3 20 1.9176 - 1.8851 0.99 2637 134 0.1679 0.2145 REMARK 3 21 1.8851 - 1.8547 0.99 2663 134 0.1796 0.2333 REMARK 3 22 1.8547 - 1.8262 0.99 2636 128 0.1806 0.2259 REMARK 3 23 1.8262 - 1.7993 0.99 2670 147 0.1874 0.2748 REMARK 3 24 1.7993 - 1.7740 0.99 2592 132 0.2040 0.2401 REMARK 3 25 1.7740 - 1.7500 0.99 2636 158 0.2155 0.2642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4785 REMARK 3 ANGLE : 1.260 6519 REMARK 3 CHIRALITY : 0.079 709 REMARK 3 PLANARITY : 0.006 876 REMARK 3 DIHEDRAL : 12.240 1683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5189 -3.9846 26.8918 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.1084 REMARK 3 T33: 0.1212 T12: -0.0004 REMARK 3 T13: -0.0009 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.4981 L22: 0.9600 REMARK 3 L33: 1.7639 L12: -0.3899 REMARK 3 L13: -0.5624 L23: 0.2028 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: -0.1279 S13: -0.0663 REMARK 3 S21: 0.1260 S22: 0.0705 S23: 0.0306 REMARK 3 S31: 0.1959 S32: 0.0088 S33: 0.0165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7670 22.1205 21.9535 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1535 REMARK 3 T33: 0.1606 T12: 0.0390 REMARK 3 T13: -0.0237 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.5231 L22: 2.4810 REMARK 3 L33: 2.7595 L12: 0.9579 REMARK 3 L13: -0.5273 L23: -0.4238 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.1261 S13: 0.0556 REMARK 3 S21: 0.1910 S22: -0.0091 S23: -0.1120 REMARK 3 S31: -0.2645 S32: 0.1447 S33: 0.0328 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5177 6.0151 21.8219 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1440 REMARK 3 T33: 0.1004 T12: -0.0189 REMARK 3 T13: 0.0028 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.1850 L22: 2.0257 REMARK 3 L33: 1.2576 L12: -1.2149 REMARK 3 L13: -0.4732 L23: 0.3787 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: -0.1375 S13: 0.0061 REMARK 3 S21: 0.1803 S22: 0.0603 S23: 0.2031 REMARK 3 S31: 0.0157 S32: -0.1578 S33: 0.0295 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3057 -6.6236 -4.5308 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.0964 REMARK 3 T33: 0.1138 T12: -0.0053 REMARK 3 T13: -0.0038 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.9896 L22: 0.7654 REMARK 3 L33: 1.9348 L12: -0.1857 REMARK 3 L13: -0.2764 L23: 0.1265 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.1373 S13: -0.0743 REMARK 3 S21: -0.0780 S22: -0.0096 S23: 0.0079 REMARK 3 S31: 0.1443 S32: -0.0366 S33: -0.0095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1775 15.0402 0.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1218 REMARK 3 T33: 0.1510 T12: -0.0100 REMARK 3 T13: -0.0095 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8150 L22: 3.3770 REMARK 3 L33: 2.7197 L12: 0.0587 REMARK 3 L13: -0.5301 L23: -1.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: 0.0062 S13: 0.0750 REMARK 3 S21: -0.1111 S22: 0.0117 S23: 0.0299 REMARK 3 S31: -0.0366 S32: 0.0353 S33: -0.0543 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7669 -0.9506 -0.0192 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.1356 REMARK 3 T33: 0.0857 T12: 0.0242 REMARK 3 T13: 0.0065 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.6770 L22: 1.5897 REMARK 3 L33: 1.0721 L12: 0.3127 REMARK 3 L13: -0.7308 L23: -0.3153 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.2601 S13: -0.1264 REMARK 3 S21: -0.2373 S22: -0.0260 S23: -0.2753 REMARK 3 S31: 0.1132 S32: 0.0435 S33: 0.0918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 79.402 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : 0.72500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4JBD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (15 MM HEPES PH 8.0, 150 MM REMARK 280 NACL, 5% GLYCEROL, 10 MM 4OH-PROLINE), RESERVOIR (0.1 M HEPES PH REMARK 280 7.5, 0.8 M SODIUM PHOSPHATE, 0.8 M POTASSIUM PHOSPHATE), SOAK 2 REMARK 280 MINUTES IN (RESERVOIR + 20% GLYCEROL), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.44650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.10200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.10200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.44650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 152 O HOH B 610 1.44 REMARK 500 NH1 ARG B 152 O HOH B 610 1.88 REMARK 500 OE1 GLU A 194 O HOH A 587 1.88 REMARK 500 OD1 ASP B 146 O HOH B 610 2.08 REMARK 500 O HOH A 595 O HOH A 700 2.11 REMARK 500 OE2 GLU B 144 NH1 ARG B 152 2.15 REMARK 500 NH1 ARG A 295 OE1 GLN B 297 2.18 REMARK 500 OD2 ASP B 25 O HOH B 788 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 181 OE2 GLU B 144 4455 2.00 REMARK 500 O HOH A 638 O HOH B 693 4455 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 144 CB GLU B 144 CG -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 150 -68.55 -131.16 REMARK 500 CYS A 238 108.21 71.40 REMARK 500 CYS B 238 103.71 72.89 REMARK 500 ALA B 294 149.19 -170.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506516 RELATED DB: TARGETTRACK DBREF 4JUU A 1 312 UNP Q8P833 Q8P833_XANCP 1 312 DBREF 4JUU B 1 312 UNP Q8P833 Q8P833_XANCP 1 312 SEQADV 4JUU MET A -21 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -20 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -19 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -18 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -17 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -16 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS A -15 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER A -14 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER A -13 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLY A -12 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU VAL A -11 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU ASP A -10 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU LEU A -9 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLY A -8 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU THR A -7 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLU A -6 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU ASN A -5 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU LEU A -4 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU TYR A -3 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU PHE A -2 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLN A -1 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER A 0 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU MET B -21 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -20 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -19 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -18 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -17 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -16 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU HIS B -15 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER B -14 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER B -13 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLY B -12 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU VAL B -11 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU ASP B -10 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU LEU B -9 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLY B -8 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU THR B -7 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLU B -6 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU ASN B -5 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU LEU B -4 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU TYR B -3 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU PHE B -2 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU GLN B -1 UNP Q8P833 EXPRESSION TAG SEQADV 4JUU SER B 0 UNP Q8P833 EXPRESSION TAG SEQRES 1 A 334 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 334 GLY THR GLU ASN LEU TYR PHE GLN SER MET HIS THR ILE SEQRES 3 A 334 ASP VAL ILE ASP SER HIS THR ALA GLY GLU PRO THR ARG SEQRES 4 A 334 VAL VAL LEU ALA GLY PHE PRO ASP LEU GLY ASP GLY ASP SEQRES 5 A 334 LEU ALA GLN CYS ARG GLU ARG PHE ARG SER ASP PHE ASP SEQRES 6 A 334 HIS TRP ARG SER ALA ILE ALA CYS GLU PRO ARG GLY SER SEQRES 7 A 334 ASP THR MET VAL GLY ALA LEU LEU LEU PRO PRO ARG ASP SEQRES 8 A 334 PRO SER ALA CYS THR GLY VAL ILE PHE PHE ASN ASN VAL SEQRES 9 A 334 GLY TYR LEU GLY MET CYS GLY HIS GLY THR ILE GLY VAL SEQRES 10 A 334 VAL ARG THR LEU ALA GLU LEU GLY ARG ILE ALA PRO GLY SEQRES 11 A 334 GLN HIS ARG ILE GLU THR PRO VAL GLY THR VAL GLY VAL SEQRES 12 A 334 ALA LEU ALA ASP ASP GLY THR VAL SER ILE ASP ASN VAL SEQRES 13 A 334 GLU SER TYR ARG HIS ALA ALA GLY VAL GLU VAL ASP VAL SEQRES 14 A 334 PRO GLY HIS GLY ARG VAL ARG GLY ASP VAL ALA TRP GLY SEQRES 15 A 334 GLY ASN TRP PHE PHE ILE THR GLU GLN ALA PRO CYS ALA SEQRES 16 A 334 LEU GLY LEU ALA GLN GLN ARG GLU LEU THR ALA TYR THR SEQRES 17 A 334 GLU ALA ILE ARG LEU ALA LEU GLU ALA ALA GLY ILE THR SEQRES 18 A 334 GLY GLU ALA GLY GLY GLU ILE ASP HIS ILE GLU ILE SER SEQRES 19 A 334 GLY VAL ALA PRO ASP GLY SER GLY ALA ALA ARG ASN PHE SEQRES 20 A 334 VAL LEU CYS PRO GLY LEU ALA TYR ASP ARG SER PRO CYS SEQRES 21 A 334 GLY THR GLY THR SER ALA LYS LEU ALA CYS LEU ALA ALA SEQRES 22 A 334 ASP GLY LYS LEU ALA GLU GLY GLU ARG TRP LEU GLN GLN SEQRES 23 A 334 GLY ILE LEU GLY SER ALA PHE GLU GLY SER TYR ARG HIS SEQRES 24 A 334 SER GLY ARG GLY ILE ALA PRO ARG ILE SER GLY HIS ALA SEQRES 25 A 334 PHE ILE THR ALA ARG SER GLN LEU LEU ILE ASP PRO ALA SEQRES 26 A 334 ASP PRO PHE ALA TRP GLY ILE VAL ALA SEQRES 1 B 334 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 334 GLY THR GLU ASN LEU TYR PHE GLN SER MET HIS THR ILE SEQRES 3 B 334 ASP VAL ILE ASP SER HIS THR ALA GLY GLU PRO THR ARG SEQRES 4 B 334 VAL VAL LEU ALA GLY PHE PRO ASP LEU GLY ASP GLY ASP SEQRES 5 B 334 LEU ALA GLN CYS ARG GLU ARG PHE ARG SER ASP PHE ASP SEQRES 6 B 334 HIS TRP ARG SER ALA ILE ALA CYS GLU PRO ARG GLY SER SEQRES 7 B 334 ASP THR MET VAL GLY ALA LEU LEU LEU PRO PRO ARG ASP SEQRES 8 B 334 PRO SER ALA CYS THR GLY VAL ILE PHE PHE ASN ASN VAL SEQRES 9 B 334 GLY TYR LEU GLY MET CYS GLY HIS GLY THR ILE GLY VAL SEQRES 10 B 334 VAL ARG THR LEU ALA GLU LEU GLY ARG ILE ALA PRO GLY SEQRES 11 B 334 GLN HIS ARG ILE GLU THR PRO VAL GLY THR VAL GLY VAL SEQRES 12 B 334 ALA LEU ALA ASP ASP GLY THR VAL SER ILE ASP ASN VAL SEQRES 13 B 334 GLU SER TYR ARG HIS ALA ALA GLY VAL GLU VAL ASP VAL SEQRES 14 B 334 PRO GLY HIS GLY ARG VAL ARG GLY ASP VAL ALA TRP GLY SEQRES 15 B 334 GLY ASN TRP PHE PHE ILE THR GLU GLN ALA PRO CYS ALA SEQRES 16 B 334 LEU GLY LEU ALA GLN GLN ARG GLU LEU THR ALA TYR THR SEQRES 17 B 334 GLU ALA ILE ARG LEU ALA LEU GLU ALA ALA GLY ILE THR SEQRES 18 B 334 GLY GLU ALA GLY GLY GLU ILE ASP HIS ILE GLU ILE SER SEQRES 19 B 334 GLY VAL ALA PRO ASP GLY SER GLY ALA ALA ARG ASN PHE SEQRES 20 B 334 VAL LEU CYS PRO GLY LEU ALA TYR ASP ARG SER PRO CYS SEQRES 21 B 334 GLY THR GLY THR SER ALA LYS LEU ALA CYS LEU ALA ALA SEQRES 22 B 334 ASP GLY LYS LEU ALA GLU GLY GLU ARG TRP LEU GLN GLN SEQRES 23 B 334 GLY ILE LEU GLY SER ALA PHE GLU GLY SER TYR ARG HIS SEQRES 24 B 334 SER GLY ARG GLY ILE ALA PRO ARG ILE SER GLY HIS ALA SEQRES 25 B 334 PHE ILE THR ALA ARG SER GLN LEU LEU ILE ASP PRO ALA SEQRES 26 B 334 ASP PRO PHE ALA TRP GLY ILE VAL ALA HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET CL A 405 1 HET PO4 B 401 5 HET UNL B 402 11 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND FORMUL 3 PO4 5(O4 P 3-) FORMUL 7 CL CL 1- FORMUL 10 HOH *596(H2 O) HELIX 1 1 ASP A 30 PHE A 42 1 13 HELIX 2 2 PHE A 42 CYS A 51 1 10 HELIX 3 3 CYS A 88 LEU A 102 1 15 HELIX 4 4 GLY A 175 ALA A 177 5 3 HELIX 5 5 GLN A 178 GLY A 197 1 20 HELIX 6 6 GLY A 200 GLY A 204 5 5 HELIX 7 7 CYS A 238 ASP A 252 1 15 HELIX 8 8 ASP B 30 PHE B 42 1 13 HELIX 9 9 PHE B 42 CYS B 51 1 10 HELIX 10 10 CYS B 88 LEU B 102 1 15 HELIX 11 11 GLY B 175 ALA B 177 5 3 HELIX 12 12 GLN B 178 GLY B 197 1 20 HELIX 13 13 GLY B 200 GLY B 204 5 5 HELIX 14 14 CYS B 238 ASP B 252 1 15 SHEET 1 A22 TRP A 261 GLN A 264 0 SHEET 2 A22 ALA A 270 SER A 278 -1 O GLY A 273 N TRP A 261 SHEET 3 A22 GLY A 281 GLY A 288 -1 O ARG A 285 N SER A 274 SHEET 4 A22 VAL A 129 ASP A 132 -1 N ILE A 131 O ILE A 286 SHEET 5 A22 GLY A 117 LEU A 123 -1 N ALA A 122 O SER A 130 SHEET 6 A22 GLY A 108 THR A 114 -1 N ILE A 112 O VAL A 119 SHEET 7 A22 THR A 74 PHE A 79 1 N THR A 74 O GLU A 113 SHEET 8 A22 VAL A 60 LEU A 65 -1 N LEU A 63 O ILE A 77 SHEET 9 A22 GLU A 14 ALA A 21 1 N ARG A 17 O ALA A 62 SHEET 10 A22 HIS A 2 THR A 11 -1 N ILE A 7 O VAL A 18 SHEET 11 A22 ALA A 290 ILE A 300 -1 O LEU A 298 N ILE A 4 SHEET 12 A22 ALA B 290 LEU B 299 -1 O ARG B 295 N GLN A 297 SHEET 13 A22 THR B 3 THR B 11 -1 N ILE B 4 O LEU B 298 SHEET 14 A22 GLU B 14 ALA B 21 -1 O VAL B 18 N ILE B 7 SHEET 15 A22 VAL B 60 LEU B 65 1 O ALA B 62 N ARG B 17 SHEET 16 A22 THR B 74 PHE B 79 -1 O ILE B 77 N LEU B 63 SHEET 17 A22 GLY B 108 THR B 114 1 O GLU B 113 N THR B 74 SHEET 18 A22 GLY B 117 LEU B 123 -1 O VAL B 119 N ILE B 112 SHEET 19 A22 VAL B 129 ASP B 132 -1 O SER B 130 N ALA B 122 SHEET 20 A22 GLY B 281 GLY B 288 -1 O ILE B 286 N ILE B 131 SHEET 21 A22 ALA B 270 SER B 278 -1 N ARG B 276 O ALA B 283 SHEET 22 A22 TRP B 261 GLN B 264 -1 N GLN B 263 O PHE B 271 SHEET 1 B 5 TYR A 137 VAL A 147 0 SHEET 2 B 5 GLY A 151 TRP A 159 -1 O VAL A 157 N ALA A 140 SHEET 3 B 5 TRP A 163 THR A 167 -1 O ILE A 166 N ASP A 156 SHEET 4 B 5 HIS A 208 VAL A 214 1 O GLU A 210 N PHE A 165 SHEET 5 B 5 ALA A 222 LEU A 227 -1 O PHE A 225 N ILE A 211 SHEET 1 C 5 TYR B 137 VAL B 147 0 SHEET 2 C 5 GLY B 151 TRP B 159 -1 O VAL B 153 N VAL B 145 SHEET 3 C 5 TRP B 163 THR B 167 -1 O ILE B 166 N ASP B 156 SHEET 4 C 5 HIS B 208 VAL B 214 1 O SER B 212 N THR B 167 SHEET 5 C 5 ALA B 222 LEU B 227 -1 O PHE B 225 N ILE B 211 CISPEP 1 GLU A 52 PRO A 53 0 1.33 CISPEP 2 GLU B 52 PRO B 53 0 1.83 SITE 1 AC1 5 TYR A 137 HIS A 139 GLU A 201 ARG A 280 SITE 2 AC1 5 CL A 405 SITE 1 AC2 4 ASP A 25 GLY A 27 PRO A 66 ARG A 68 SITE 1 AC3 4 CYS A 73 HIS A 110 ARG A 152 HOH A 541 SITE 1 AC4 6 HIS A 90 ASP A 234 SER A 236 CYS A 238 SITE 2 AC4 6 GLY A 239 HOH A 534 SITE 1 AC5 2 ALA A 202 PO4 A 401 SITE 1 AC6 4 ARG A 280 CYS B 73 HIS B 110 HOH B 592 CRYST1 54.893 108.749 116.204 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008606 0.00000