data_4JV0 # _entry.id 4JV0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JV0 NDB NA2306 RCSB RCSB078538 WWPDB D_1000078538 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JUZ . unspecified PDB 4JV1 . unspecified PDB 4JV2 . unspecified # _pdbx_database_status.entry_id 4JV0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Banerjee, S.' 1 'Shanmugam, G.' 2 'Stone, M.P.' 3 # _citation.id primary _citation.title 'Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.' _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 26 _citation.page_first 1348 _citation.page_last 1360 _citation.year 2013 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23947567 _citation.pdbx_database_id_DOI 10.1021/tx400200b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shanmugam, G.' 1 primary 'Minko, I.G.' 2 primary 'Banerjee, S.' 3 primary 'Christov, P.P.' 4 primary 'Kozekov, I.D.' 5 primary 'Rizzo, C.J.' 6 primary 'Lloyd, R.S.' 7 primary 'Egli, M.' 8 primary 'Stone, M.P.' 9 # _cell.entry_id 4JV0 _cell.length_a 93.826 _cell.length_b 104.486 _cell.length_c 52.529 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JV0 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 39848.398 1 2.7.7.7 ? ? ? 2 polymer syn ;DNA (5'-D(P*TP*(KAG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') ; 4551.001 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3') ; 4385.852 1 ? ? ? ? 4 non-polymer syn ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; 491.182 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 6 water nat water 18.015 44 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE SVKLLQKILEEDERKIRRIGVRFSKFI ; ;HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE SVKLLQKILEEDERKIRRIGVRFSKFI ; A ? 2 polydeoxyribonucleotide no yes '(DT)(KAG)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TGGAATCCTTCCCCC B ? 3 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)(DC)' GGGGGAAGGATTCC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 ILE n 1 9 VAL n 1 10 LEU n 1 11 PHE n 1 12 VAL n 1 13 ASP n 1 14 PHE n 1 15 ASP n 1 16 TYR n 1 17 PHE n 1 18 TYR n 1 19 ALA n 1 20 GLN n 1 21 VAL n 1 22 GLU n 1 23 GLU n 1 24 VAL n 1 25 LEU n 1 26 ASN n 1 27 PRO n 1 28 SER n 1 29 LEU n 1 30 LYS n 1 31 GLY n 1 32 LYS n 1 33 PRO n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 CYS n 1 38 VAL n 1 39 PHE n 1 40 SER n 1 41 GLY n 1 42 ARG n 1 43 PHE n 1 44 GLU n 1 45 ASP n 1 46 SER n 1 47 GLY n 1 48 ALA n 1 49 VAL n 1 50 ALA n 1 51 THR n 1 52 ALA n 1 53 ASN n 1 54 TYR n 1 55 GLU n 1 56 ALA n 1 57 ARG n 1 58 LYS n 1 59 PHE n 1 60 GLY n 1 61 VAL n 1 62 LYS n 1 63 ALA n 1 64 GLY n 1 65 ILE n 1 66 PRO n 1 67 ILE n 1 68 VAL n 1 69 GLU n 1 70 ALA n 1 71 LYS n 1 72 LYS n 1 73 ILE n 1 74 LEU n 1 75 PRO n 1 76 ASN n 1 77 ALA n 1 78 VAL n 1 79 TYR n 1 80 LEU n 1 81 PRO n 1 82 MET n 1 83 ARG n 1 84 LYS n 1 85 GLU n 1 86 VAL n 1 87 TYR n 1 88 GLN n 1 89 GLN n 1 90 VAL n 1 91 SER n 1 92 SER n 1 93 ARG n 1 94 ILE n 1 95 MET n 1 96 ASN n 1 97 LEU n 1 98 LEU n 1 99 ARG n 1 100 GLU n 1 101 TYR n 1 102 SER n 1 103 GLU n 1 104 LYS n 1 105 ILE n 1 106 GLU n 1 107 ILE n 1 108 ALA n 1 109 SER n 1 110 ILE n 1 111 ASP n 1 112 GLU n 1 113 ALA n 1 114 TYR n 1 115 LEU n 1 116 ASP n 1 117 ILE n 1 118 SER n 1 119 ASP n 1 120 LYS n 1 121 VAL n 1 122 ARG n 1 123 ASP n 1 124 TYR n 1 125 ARG n 1 126 GLU n 1 127 ALA n 1 128 TYR n 1 129 ASN n 1 130 LEU n 1 131 GLY n 1 132 LEU n 1 133 GLU n 1 134 ILE n 1 135 LYS n 1 136 ASN n 1 137 LYS n 1 138 ILE n 1 139 LEU n 1 140 GLU n 1 141 LYS n 1 142 GLU n 1 143 LYS n 1 144 ILE n 1 145 THR n 1 146 VAL n 1 147 THR n 1 148 VAL n 1 149 GLY n 1 150 ILE n 1 151 SER n 1 152 LYS n 1 153 ASN n 1 154 LYS n 1 155 VAL n 1 156 PHE n 1 157 ALA n 1 158 LYS n 1 159 ILE n 1 160 ALA n 1 161 ALA n 1 162 ASP n 1 163 MET n 1 164 ALA n 1 165 LYS n 1 166 PRO n 1 167 ASN n 1 168 GLY n 1 169 ILE n 1 170 LYS n 1 171 VAL n 1 172 ILE n 1 173 ASP n 1 174 ASP n 1 175 GLU n 1 176 GLU n 1 177 VAL n 1 178 LYS n 1 179 ARG n 1 180 LEU n 1 181 ILE n 1 182 ARG n 1 183 GLU n 1 184 LEU n 1 185 ASP n 1 186 ILE n 1 187 ALA n 1 188 ASP n 1 189 VAL n 1 190 PRO n 1 191 GLY n 1 192 ILE n 1 193 GLY n 1 194 ASN n 1 195 ILE n 1 196 THR n 1 197 ALA n 1 198 GLU n 1 199 LYS n 1 200 LEU n 1 201 LYS n 1 202 LYS n 1 203 LEU n 1 204 GLY n 1 205 ILE n 1 206 ASN n 1 207 LYS n 1 208 LEU n 1 209 VAL n 1 210 ASP n 1 211 THR n 1 212 LEU n 1 213 SER n 1 214 ILE n 1 215 GLU n 1 216 PHE n 1 217 ASP n 1 218 LYS n 1 219 LEU n 1 220 LYS n 1 221 GLY n 1 222 MET n 1 223 ILE n 1 224 GLY n 1 225 GLU n 1 226 ALA n 1 227 LYS n 1 228 ALA n 1 229 LYS n 1 230 TYR n 1 231 LEU n 1 232 ILE n 1 233 SER n 1 234 LEU n 1 235 ALA n 1 236 ARG n 1 237 ASP n 1 238 GLU n 1 239 TYR n 1 240 ASN n 1 241 GLU n 1 242 PRO n 1 243 ILE n 1 244 ARG n 1 245 THR n 1 246 ARG n 1 247 VAL n 1 248 ARG n 1 249 LYS n 1 250 SER n 1 251 ILE n 1 252 GLY n 1 253 ARG n 1 254 ILE n 1 255 VAL n 1 256 THR n 1 257 MET n 1 258 LYS n 1 259 ARG n 1 260 ASN n 1 261 SER n 1 262 ARG n 1 263 ASN n 1 264 LEU n 1 265 GLU n 1 266 GLU n 1 267 ILE n 1 268 LYS n 1 269 PRO n 1 270 TYR n 1 271 LEU n 1 272 PHE n 1 273 ARG n 1 274 ALA n 1 275 ILE n 1 276 GLU n 1 277 GLU n 1 278 SER n 1 279 TYR n 1 280 TYR n 1 281 LYS n 1 282 LEU n 1 283 ASP n 1 284 LYS n 1 285 ARG n 1 286 ILE n 1 287 PRO n 1 288 LYS n 1 289 ALA n 1 290 ILE n 1 291 HIS n 1 292 VAL n 1 293 VAL n 1 294 ALA n 1 295 VAL n 1 296 THR n 1 297 GLU n 1 298 ASP n 1 299 LEU n 1 300 ASP n 1 301 ILE n 1 302 VAL n 1 303 SER n 1 304 ARG n 1 305 GLY n 1 306 ARG n 1 307 THR n 1 308 PHE n 1 309 PRO n 1 310 HIS n 1 311 GLY n 1 312 ILE n 1 313 SER n 1 314 LYS n 1 315 GLU n 1 316 THR n 1 317 ALA n 1 318 TYR n 1 319 SER n 1 320 GLU n 1 321 SER n 1 322 VAL n 1 323 LYS n 1 324 LEU n 1 325 LEU n 1 326 GLN n 1 327 LYS n 1 328 ILE n 1 329 LEU n 1 330 GLU n 1 331 GLU n 1 332 ASP n 1 333 GLU n 1 334 ARG n 1 335 LYS n 1 336 ILE n 1 337 ARG n 1 338 ARG n 1 339 ILE n 1 340 GLY n 1 341 VAL n 1 342 ARG n 1 343 PHE n 1 344 SER n 1 345 LYS n 1 346 PHE n 1 347 ILE n 2 1 DT n 2 2 KAG n 2 3 DG n 2 4 DA n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DT n 2 11 DC n 2 12 DC n 2 13 DC n 2 14 DC n 2 15 DC n 3 1 DG n 3 2 DG n 3 3 DG n 3 4 DG n 3 5 DG n 3 6 DA n 3 7 DA n 3 8 DG n 3 9 DG n 3 10 DA n 3 11 DT n 3 12 DT n 3 13 DC n 3 14 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 35092 / DSM 1617 / JCM 11322 / P2' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO4_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; 1 ? 2 PDB 4JV0 4JV0 2 ? ? ? 3 PDB 4JV0 4JV0 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JV0 A 7 ? 347 ? Q97W02 1 ? 341 ? 1 341 2 2 4JV0 B 1 ? 15 ? 4JV0 4 ? 18 ? 4 18 3 3 4JV0 C 1 ? 14 ? 4JV0 19 ? 32 ? 19 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JV0 HIS A 1 ? UNP Q97W02 ? ? 'EXPRESSION TAG' -5 1 1 4JV0 HIS A 2 ? UNP Q97W02 ? ? 'EXPRESSION TAG' -4 2 1 4JV0 HIS A 3 ? UNP Q97W02 ? ? 'EXPRESSION TAG' -3 3 1 4JV0 HIS A 4 ? UNP Q97W02 ? ? 'EXPRESSION TAG' -2 4 1 4JV0 HIS A 5 ? UNP Q97W02 ? ? 'EXPRESSION TAG' -1 5 1 4JV0 HIS A 6 ? UNP Q97W02 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DTP non-polymer . ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; ? 'C10 H16 N5 O12 P3' 491.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KAG 'RNA linking' n ;2'-DEOXY-N-[(1S)-1-METHYL-3-OXOPROPYL]GUANOSINE 5'-PHOSPHATE ; ? 'C14 H20 N5 O8 P' 417.311 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 4JV0 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.640 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.390 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '50 MM TRIS HCL, 15% PEG3350, 100MM CALCIUM DIACETATE, 2.5% GLYCEROL, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979 1.0 2 1.0 1.0 # _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.diffrn_id 1 _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4JV0 _reflns.d_resolution_high 2.950 _reflns.d_resolution_low 50.000 _reflns.number_obs 11170 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.565 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JV0 _refine.ls_d_res_high 2.9500 _refine.ls_d_res_low 34.9100 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.1000 _refine.ls_number_reflns_obs 11170 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2000 _refine.ls_R_factor_R_work 0.1920 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2700 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_number_reflns_R_free 1118 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 71.5388 _refine.solvent_model_param_bsol 37.1600 _refine.solvent_model_param_ksol 0.3200 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 14.4796 _refine.aniso_B[2][2] 3.7151 _refine.aniso_B[3][3] -18.1947 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.8100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2BQU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 127.780 _refine.B_iso_min 45.960 _refine.pdbx_overall_phase_error 29.0500 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2744 _refine_hist.pdbx_number_atoms_nucleic_acid 595 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 3415 _refine_hist.d_res_high 2.9500 _refine_hist.d_res_low 34.9100 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1.3 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.9502 3.0844 8 90.0000 1123 . 0.3007 0.4542 . 125 . 1248 . . 'X-RAY DIFFRACTION' 3.0844 3.2469 8 96.0000 1203 . 0.2469 0.3177 . 133 . 1336 . . 'X-RAY DIFFRACTION' 3.2469 3.4502 8 100.0000 1252 . 0.2071 0.3197 . 139 . 1391 . . 'X-RAY DIFFRACTION' 3.4502 3.7163 8 100.0000 1258 . 0.1949 0.2916 . 141 . 1399 . . 'X-RAY DIFFRACTION' 3.7163 4.0898 8 100.0000 1270 . 0.1823 0.2716 . 141 . 1411 . . 'X-RAY DIFFRACTION' 4.0898 4.6804 8 100.0000 1289 . 0.1459 0.2230 . 142 . 1431 . . 'X-RAY DIFFRACTION' 4.6804 5.8922 8 100.0000 1296 . 0.1752 0.2150 . 144 . 1440 . . 'X-RAY DIFFRACTION' 5.8922 34.9077 8 100.0000 1361 . 0.2010 0.2709 . 153 . 1514 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JV0 _struct.title 'Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polymerase Dpo4' _struct.pdbx_descriptor 'DNA polymerase IV (E.C.2.7.7.7)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JV0 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'TERNARY COMPLEX OF DPO4-DNA-DATP, DNA POLYMERASE, DNA ADDUCT, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 16 ? LEU A 25 ? TYR A 10 LEU A 19 1 ? 10 HELX_P HELX_P2 2 ASN A 26 ? LYS A 30 ? ASN A 20 LYS A 24 5 ? 5 HELX_P HELX_P3 3 ASN A 53 ? LYS A 58 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO A 66 ? LEU A 74 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG A 83 ? ARG A 99 ? ARG A 77 ARG A 93 1 ? 17 HELX_P HELX_P6 6 ASP A 123 ? LYS A 143 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P7 7 ASN A 153 ? LYS A 165 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P8 8 ASP A 173 ? LEU A 184 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P9 9 ASP A 185 ? VAL A 189 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P10 10 GLY A 193 ? LYS A 202 ? GLY A 187 LYS A 196 1 ? 10 HELX_P HELX_P11 11 LYS A 207 ? LEU A 212 ? LYS A 201 LEU A 206 5 ? 6 HELX_P HELX_P12 12 GLU A 215 ? GLY A 224 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P13 13 GLY A 224 ? ARG A 236 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P14 14 ASN A 263 ? ASP A 283 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P15 15 SER A 313 ? ASP A 332 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B DT 1 "O3'" ? ? ? 1_555 B KAG 2 P ? ? B DT 4 B KAG 5 1_555 ? ? ? ? ? ? ? 1.615 ? covale2 covale ? ? B KAG 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B KAG 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.600 ? metalc1 metalc ? ? A PHE 14 O ? ? ? 1_555 E CA . CA ? ? A PHE 8 A CA 1001 1_555 ? ? ? ? ? ? ? 2.670 ? metalc2 metalc ? ? A ASP 111 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 1001 1_555 ? ? ? ? ? ? ? 2.690 ? metalc3 metalc ? ? D DTP . O1G ? ? ? 1_555 E CA . CA ? ? A DTP 1000 A CA 1001 1_555 ? ? ? ? ? ? ? 2.835 ? metalc4 metalc ? ? D DTP . O1A ? ? ? 1_555 E CA . CA ? ? A DTP 1000 A CA 1001 1_555 ? ? ? ? ? ? ? 2.843 ? metalc5 metalc ? ? A ILE 192 O ? ? ? 1_555 F CA . CA ? ? A ILE 186 A CA 1002 1_555 ? ? ? ? ? ? ? 2.876 ? metalc6 metalc ? ? A ASP 13 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 1001 1_555 ? ? ? ? ? ? ? 2.879 ? metalc7 metalc ? ? D DTP . O2B ? ? ? 1_555 E CA . CA ? ? A DTP 1000 A CA 1001 1_555 ? ? ? ? ? ? ? 2.883 ? metalc8 metalc ? ? A ALA 187 O ? ? ? 1_555 F CA . CA ? ? A ALA 181 A CA 1002 1_555 ? ? ? ? ? ? ? 2.887 ? metalc9 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 1002 C HOH 101 1_555 ? ? ? ? ? ? ? 2.950 ? metalc10 metalc ? ? F CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 1002 A HOH 1101 1_555 ? ? ? ? ? ? ? 2.975 ? metalc11 metalc ? ? F CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 1002 A HOH 1102 1_555 ? ? ? ? ? ? ? 3.089 ? hydrog1 hydrog ? ? B KAG 2 N1 ? ? ? 1_555 C DC 14 N3 ? ? B KAG 5 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B KAG 2 N2 ? ? ? 1_555 C DC 14 O2 ? ? B KAG 5 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B KAG 2 O6 ? ? ? 1_555 C DC 14 N4 ? ? B KAG 5 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 6 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 6 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 6 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 7 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 7 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 8 C DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 8 C DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 9 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 9 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 10 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 10 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 10 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 11 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 12 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 12 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 13 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 13 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 14 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 14 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 14 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 15 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 15 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 15 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 16 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 16 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 16 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 17 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B DC 15 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? B DC 15 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? B DC 15 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 18 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 165 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 166 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 105 ? ILE A 107 ? ILE A 99 ILE A 101 A 2 GLU A 112 ? ASP A 116 ? GLU A 106 ASP A 110 A 3 VAL A 9 ? PHE A 14 ? VAL A 3 PHE A 8 A 4 VAL A 146 ? SER A 151 ? VAL A 140 SER A 145 A 5 ILE A 169 ? VAL A 171 ? ILE A 163 VAL A 165 B 1 GLY A 47 ? ALA A 52 ? GLY A 41 ALA A 46 B 2 VAL A 34 ? PHE A 39 ? VAL A 28 PHE A 33 B 3 VAL A 78 ? PRO A 81 ? VAL A 72 PRO A 75 C 1 SER A 250 ? SER A 261 ? SER A 244 SER A 255 C 2 ILE A 336 ? PHE A 346 ? ILE A 330 PHE A 340 C 3 PRO A 287 ? THR A 296 ? PRO A 281 THR A 290 C 4 ILE A 301 ? THR A 307 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 106 ? N GLU A 100 O TYR A 114 ? O TYR A 108 A 2 3 O LEU A 115 ? O LEU A 109 N LEU A 10 ? N LEU A 4 A 3 4 N VAL A 9 ? N VAL A 3 O SER A 151 ? O SER A 145 A 4 5 N ILE A 150 ? N ILE A 144 O LYS A 170 ? O LYS A 164 B 1 2 O THR A 51 ? O THR A 45 N VAL A 36 ? N VAL A 30 B 2 3 N CYS A 37 ? N CYS A 31 O LEU A 80 ? O LEU A 74 C 1 2 N ILE A 251 ? N ILE A 245 O PHE A 343 ? O PHE A 337 C 2 3 O ARG A 337 ? O ARG A 331 N VAL A 295 ? N VAL A 289 C 3 4 N VAL A 292 ? N VAL A 286 O ARG A 304 ? O ARG A 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE DTP A 1000' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CA A 1001' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CA A 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 PHE A 14 ? PHE A 8 . ? 1_555 ? 2 AC1 16 ASP A 15 ? ASP A 9 . ? 1_555 ? 3 AC1 16 TYR A 16 ? TYR A 10 . ? 1_555 ? 4 AC1 16 PHE A 17 ? PHE A 11 . ? 1_555 ? 5 AC1 16 TYR A 18 ? TYR A 12 . ? 1_555 ? 6 AC1 16 ALA A 50 ? ALA A 44 . ? 1_555 ? 7 AC1 16 THR A 51 ? THR A 45 . ? 1_555 ? 8 AC1 16 TYR A 54 ? TYR A 48 . ? 1_555 ? 9 AC1 16 ARG A 57 ? ARG A 51 . ? 1_555 ? 10 AC1 16 ASP A 111 ? ASP A 105 . ? 1_555 ? 11 AC1 16 LYS A 165 ? LYS A 159 . ? 1_555 ? 12 AC1 16 CA E . ? CA A 1001 . ? 1_555 ? 13 AC1 16 HOH G . ? HOH A 1122 . ? 1_555 ? 14 AC1 16 DT B 1 ? DT B 4 . ? 1_555 ? 15 AC1 16 KAG B 2 ? KAG B 5 . ? 1_555 ? 16 AC1 16 DC C 14 ? DC C 32 . ? 1_555 ? 17 AC2 4 ASP A 13 ? ASP A 7 . ? 1_555 ? 18 AC2 4 PHE A 14 ? PHE A 8 . ? 1_555 ? 19 AC2 4 ASP A 111 ? ASP A 105 . ? 1_555 ? 20 AC2 4 DTP D . ? DTP A 1000 . ? 1_555 ? 21 AC3 5 ALA A 187 ? ALA A 181 . ? 1_555 ? 22 AC3 5 ILE A 192 ? ILE A 186 . ? 1_555 ? 23 AC3 5 HOH G . ? HOH A 1101 . ? 1_555 ? 24 AC3 5 HOH G . ? HOH A 1102 . ? 1_555 ? 25 AC3 5 HOH I . ? HOH C 101 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JV0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4JV0 _atom_sites.fract_transf_matrix[1][1] 0.010658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009571 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019037 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 ? ? ? A . n A 1 6 HIS 6 0 ? ? ? A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 ILE 8 2 2 ILE ILE A . n A 1 9 VAL 9 3 3 VAL VAL A . n A 1 10 LEU 10 4 4 LEU LEU A . n A 1 11 PHE 11 5 5 PHE PHE A . n A 1 12 VAL 12 6 6 VAL VAL A . n A 1 13 ASP 13 7 7 ASP ASP A . n A 1 14 PHE 14 8 8 PHE PHE A . n A 1 15 ASP 15 9 9 ASP ASP A . n A 1 16 TYR 16 10 10 TYR TYR A . n A 1 17 PHE 17 11 11 PHE PHE A . n A 1 18 TYR 18 12 12 TYR TYR A . n A 1 19 ALA 19 13 13 ALA ALA A . n A 1 20 GLN 20 14 14 GLN GLN A . n A 1 21 VAL 21 15 15 VAL VAL A . n A 1 22 GLU 22 16 16 GLU GLU A . n A 1 23 GLU 23 17 17 GLU GLU A . n A 1 24 VAL 24 18 18 VAL VAL A . n A 1 25 LEU 25 19 19 LEU LEU A . n A 1 26 ASN 26 20 20 ASN ASN A . n A 1 27 PRO 27 21 21 PRO PRO A . n A 1 28 SER 28 22 22 SER SER A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 LYS 30 24 24 LYS LYS A . n A 1 31 GLY 31 25 25 GLY GLY A . n A 1 32 LYS 32 26 26 LYS LYS A . n A 1 33 PRO 33 27 27 PRO PRO A . n A 1 34 VAL 34 28 28 VAL VAL A . n A 1 35 VAL 35 29 29 VAL VAL A . n A 1 36 VAL 36 30 30 VAL VAL A . n A 1 37 CYS 37 31 31 CYS CYS A . n A 1 38 VAL 38 32 32 VAL VAL A . n A 1 39 PHE 39 33 33 PHE PHE A . n A 1 40 SER 40 34 34 SER SER A . n A 1 41 GLY 41 35 35 GLY GLY A . n A 1 42 ARG 42 36 36 ARG ARG A . n A 1 43 PHE 43 37 37 PHE PHE A . n A 1 44 GLU 44 38 38 GLU GLU A . n A 1 45 ASP 45 39 39 ASP ASP A . n A 1 46 SER 46 40 40 SER SER A . n A 1 47 GLY 47 41 41 GLY GLY A . n A 1 48 ALA 48 42 42 ALA ALA A . n A 1 49 VAL 49 43 43 VAL VAL A . n A 1 50 ALA 50 44 44 ALA ALA A . n A 1 51 THR 51 45 45 THR THR A . n A 1 52 ALA 52 46 46 ALA ALA A . n A 1 53 ASN 53 47 47 ASN ASN A . n A 1 54 TYR 54 48 48 TYR TYR A . n A 1 55 GLU 55 49 49 GLU GLU A . n A 1 56 ALA 56 50 50 ALA ALA A . n A 1 57 ARG 57 51 51 ARG ARG A . n A 1 58 LYS 58 52 52 LYS LYS A . n A 1 59 PHE 59 53 53 PHE PHE A . n A 1 60 GLY 60 54 54 GLY GLY A . n A 1 61 VAL 61 55 55 VAL VAL A . n A 1 62 LYS 62 56 56 LYS LYS A . n A 1 63 ALA 63 57 57 ALA ALA A . n A 1 64 GLY 64 58 58 GLY GLY A . n A 1 65 ILE 65 59 59 ILE ILE A . n A 1 66 PRO 66 60 60 PRO PRO A . n A 1 67 ILE 67 61 61 ILE ILE A . n A 1 68 VAL 68 62 62 VAL VAL A . n A 1 69 GLU 69 63 63 GLU GLU A . n A 1 70 ALA 70 64 64 ALA ALA A . n A 1 71 LYS 71 65 65 LYS LYS A . n A 1 72 LYS 72 66 66 LYS LYS A . n A 1 73 ILE 73 67 67 ILE ILE A . n A 1 74 LEU 74 68 68 LEU LEU A . n A 1 75 PRO 75 69 69 PRO PRO A . n A 1 76 ASN 76 70 70 ASN ASN A . n A 1 77 ALA 77 71 71 ALA ALA A . n A 1 78 VAL 78 72 72 VAL VAL A . n A 1 79 TYR 79 73 73 TYR TYR A . n A 1 80 LEU 80 74 74 LEU LEU A . n A 1 81 PRO 81 75 75 PRO PRO A . n A 1 82 MET 82 76 76 MET MET A . n A 1 83 ARG 83 77 77 ARG ARG A . n A 1 84 LYS 84 78 78 LYS LYS A . n A 1 85 GLU 85 79 79 GLU GLU A . n A 1 86 VAL 86 80 80 VAL VAL A . n A 1 87 TYR 87 81 81 TYR TYR A . n A 1 88 GLN 88 82 82 GLN GLN A . n A 1 89 GLN 89 83 83 GLN GLN A . n A 1 90 VAL 90 84 84 VAL VAL A . n A 1 91 SER 91 85 85 SER SER A . n A 1 92 SER 92 86 86 SER SER A . n A 1 93 ARG 93 87 87 ARG ARG A . n A 1 94 ILE 94 88 88 ILE ILE A . n A 1 95 MET 95 89 89 MET MET A . n A 1 96 ASN 96 90 90 ASN ASN A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 LEU 98 92 92 LEU LEU A . n A 1 99 ARG 99 93 93 ARG ARG A . n A 1 100 GLU 100 94 94 GLU GLU A . n A 1 101 TYR 101 95 95 TYR TYR A . n A 1 102 SER 102 96 96 SER SER A . n A 1 103 GLU 103 97 97 GLU GLU A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 ILE 105 99 99 ILE ILE A . n A 1 106 GLU 106 100 100 GLU GLU A . n A 1 107 ILE 107 101 101 ILE ILE A . n A 1 108 ALA 108 102 102 ALA ALA A . n A 1 109 SER 109 103 103 SER SER A . n A 1 110 ILE 110 104 104 ILE ILE A . n A 1 111 ASP 111 105 105 ASP ASP A . n A 1 112 GLU 112 106 106 GLU GLU A . n A 1 113 ALA 113 107 107 ALA ALA A . n A 1 114 TYR 114 108 108 TYR TYR A . n A 1 115 LEU 115 109 109 LEU LEU A . n A 1 116 ASP 116 110 110 ASP ASP A . n A 1 117 ILE 117 111 111 ILE ILE A . n A 1 118 SER 118 112 112 SER SER A . n A 1 119 ASP 119 113 113 ASP ASP A . n A 1 120 LYS 120 114 114 LYS LYS A . n A 1 121 VAL 121 115 115 VAL VAL A . n A 1 122 ARG 122 116 116 ARG ARG A . n A 1 123 ASP 123 117 117 ASP ASP A . n A 1 124 TYR 124 118 118 TYR TYR A . n A 1 125 ARG 125 119 119 ARG ARG A . n A 1 126 GLU 126 120 120 GLU GLU A . n A 1 127 ALA 127 121 121 ALA ALA A . n A 1 128 TYR 128 122 122 TYR TYR A . n A 1 129 ASN 129 123 123 ASN ASN A . n A 1 130 LEU 130 124 124 LEU LEU A . n A 1 131 GLY 131 125 125 GLY GLY A . n A 1 132 LEU 132 126 126 LEU LEU A . n A 1 133 GLU 133 127 127 GLU GLU A . n A 1 134 ILE 134 128 128 ILE ILE A . n A 1 135 LYS 135 129 129 LYS LYS A . n A 1 136 ASN 136 130 130 ASN ASN A . n A 1 137 LYS 137 131 131 LYS LYS A . n A 1 138 ILE 138 132 132 ILE ILE A . n A 1 139 LEU 139 133 133 LEU LEU A . n A 1 140 GLU 140 134 134 GLU GLU A . n A 1 141 LYS 141 135 135 LYS LYS A . n A 1 142 GLU 142 136 136 GLU GLU A . n A 1 143 LYS 143 137 137 LYS LYS A . n A 1 144 ILE 144 138 138 ILE ILE A . n A 1 145 THR 145 139 139 THR THR A . n A 1 146 VAL 146 140 140 VAL VAL A . n A 1 147 THR 147 141 141 THR THR A . n A 1 148 VAL 148 142 142 VAL VAL A . n A 1 149 GLY 149 143 143 GLY GLY A . n A 1 150 ILE 150 144 144 ILE ILE A . n A 1 151 SER 151 145 145 SER SER A . n A 1 152 LYS 152 146 146 LYS LYS A . n A 1 153 ASN 153 147 147 ASN ASN A . n A 1 154 LYS 154 148 148 LYS LYS A . n A 1 155 VAL 155 149 149 VAL VAL A . n A 1 156 PHE 156 150 150 PHE PHE A . n A 1 157 ALA 157 151 151 ALA ALA A . n A 1 158 LYS 158 152 152 LYS LYS A . n A 1 159 ILE 159 153 153 ILE ILE A . n A 1 160 ALA 160 154 154 ALA ALA A . n A 1 161 ALA 161 155 155 ALA ALA A . n A 1 162 ASP 162 156 156 ASP ASP A . n A 1 163 MET 163 157 157 MET MET A . n A 1 164 ALA 164 158 158 ALA ALA A . n A 1 165 LYS 165 159 159 LYS LYS A . n A 1 166 PRO 166 160 160 PRO PRO A . n A 1 167 ASN 167 161 161 ASN ASN A . n A 1 168 GLY 168 162 162 GLY GLY A . n A 1 169 ILE 169 163 163 ILE ILE A . n A 1 170 LYS 170 164 164 LYS LYS A . n A 1 171 VAL 171 165 165 VAL VAL A . n A 1 172 ILE 172 166 166 ILE ILE A . n A 1 173 ASP 173 167 167 ASP ASP A . n A 1 174 ASP 174 168 168 ASP ASP A . n A 1 175 GLU 175 169 169 GLU GLU A . n A 1 176 GLU 176 170 170 GLU GLU A . n A 1 177 VAL 177 171 171 VAL VAL A . n A 1 178 LYS 178 172 172 LYS LYS A . n A 1 179 ARG 179 173 173 ARG ARG A . n A 1 180 LEU 180 174 174 LEU LEU A . n A 1 181 ILE 181 175 175 ILE ILE A . n A 1 182 ARG 182 176 176 ARG ARG A . n A 1 183 GLU 183 177 177 GLU GLU A . n A 1 184 LEU 184 178 178 LEU LEU A . n A 1 185 ASP 185 179 179 ASP ASP A . n A 1 186 ILE 186 180 180 ILE ILE A . n A 1 187 ALA 187 181 181 ALA ALA A . n A 1 188 ASP 188 182 182 ASP ASP A . n A 1 189 VAL 189 183 183 VAL VAL A . n A 1 190 PRO 190 184 184 PRO PRO A . n A 1 191 GLY 191 185 185 GLY GLY A . n A 1 192 ILE 192 186 186 ILE ILE A . n A 1 193 GLY 193 187 187 GLY GLY A . n A 1 194 ASN 194 188 188 ASN ASN A . n A 1 195 ILE 195 189 189 ILE ILE A . n A 1 196 THR 196 190 190 THR THR A . n A 1 197 ALA 197 191 191 ALA ALA A . n A 1 198 GLU 198 192 192 GLU GLU A . n A 1 199 LYS 199 193 193 LYS LYS A . n A 1 200 LEU 200 194 194 LEU LEU A . n A 1 201 LYS 201 195 195 LYS LYS A . n A 1 202 LYS 202 196 196 LYS LYS A . n A 1 203 LEU 203 197 197 LEU LEU A . n A 1 204 GLY 204 198 198 GLY GLY A . n A 1 205 ILE 205 199 199 ILE ILE A . n A 1 206 ASN 206 200 200 ASN ASN A . n A 1 207 LYS 207 201 201 LYS LYS A . n A 1 208 LEU 208 202 202 LEU LEU A . n A 1 209 VAL 209 203 203 VAL VAL A . n A 1 210 ASP 210 204 204 ASP ASP A . n A 1 211 THR 211 205 205 THR THR A . n A 1 212 LEU 212 206 206 LEU LEU A . n A 1 213 SER 213 207 207 SER SER A . n A 1 214 ILE 214 208 208 ILE ILE A . n A 1 215 GLU 215 209 209 GLU GLU A . n A 1 216 PHE 216 210 210 PHE PHE A . n A 1 217 ASP 217 211 211 ASP ASP A . n A 1 218 LYS 218 212 212 LYS LYS A . n A 1 219 LEU 219 213 213 LEU LEU A . n A 1 220 LYS 220 214 214 LYS LYS A . n A 1 221 GLY 221 215 215 GLY GLY A . n A 1 222 MET 222 216 216 MET MET A . n A 1 223 ILE 223 217 217 ILE ILE A . n A 1 224 GLY 224 218 218 GLY GLY A . n A 1 225 GLU 225 219 219 GLU GLU A . n A 1 226 ALA 226 220 220 ALA ALA A . n A 1 227 LYS 227 221 221 LYS LYS A . n A 1 228 ALA 228 222 222 ALA ALA A . n A 1 229 LYS 229 223 223 LYS LYS A . n A 1 230 TYR 230 224 224 TYR TYR A . n A 1 231 LEU 231 225 225 LEU LEU A . n A 1 232 ILE 232 226 226 ILE ILE A . n A 1 233 SER 233 227 227 SER SER A . n A 1 234 LEU 234 228 228 LEU LEU A . n A 1 235 ALA 235 229 229 ALA ALA A . n A 1 236 ARG 236 230 230 ARG ARG A . n A 1 237 ASP 237 231 231 ASP ASP A . n A 1 238 GLU 238 232 232 GLU GLU A . n A 1 239 TYR 239 233 233 TYR TYR A . n A 1 240 ASN 240 234 234 ASN ASN A . n A 1 241 GLU 241 235 235 GLU GLU A . n A 1 242 PRO 242 236 236 PRO PRO A . n A 1 243 ILE 243 237 237 ILE ILE A . n A 1 244 ARG 244 238 238 ARG ARG A . n A 1 245 THR 245 239 239 THR THR A . n A 1 246 ARG 246 240 240 ARG ARG A . n A 1 247 VAL 247 241 241 VAL VAL A . n A 1 248 ARG 248 242 242 ARG ARG A . n A 1 249 LYS 249 243 243 LYS LYS A . n A 1 250 SER 250 244 244 SER SER A . n A 1 251 ILE 251 245 245 ILE ILE A . n A 1 252 GLY 252 246 246 GLY GLY A . n A 1 253 ARG 253 247 247 ARG ARG A . n A 1 254 ILE 254 248 248 ILE ILE A . n A 1 255 VAL 255 249 249 VAL VAL A . n A 1 256 THR 256 250 250 THR THR A . n A 1 257 MET 257 251 251 MET MET A . n A 1 258 LYS 258 252 252 LYS LYS A . n A 1 259 ARG 259 253 253 ARG ARG A . n A 1 260 ASN 260 254 254 ASN ASN A . n A 1 261 SER 261 255 255 SER SER A . n A 1 262 ARG 262 256 256 ARG ARG A . n A 1 263 ASN 263 257 257 ASN ASN A . n A 1 264 LEU 264 258 258 LEU LEU A . n A 1 265 GLU 265 259 259 GLU GLU A . n A 1 266 GLU 266 260 260 GLU GLU A . n A 1 267 ILE 267 261 261 ILE ILE A . n A 1 268 LYS 268 262 262 LYS LYS A . n A 1 269 PRO 269 263 263 PRO PRO A . n A 1 270 TYR 270 264 264 TYR TYR A . n A 1 271 LEU 271 265 265 LEU LEU A . n A 1 272 PHE 272 266 266 PHE PHE A . n A 1 273 ARG 273 267 267 ARG ARG A . n A 1 274 ALA 274 268 268 ALA ALA A . n A 1 275 ILE 275 269 269 ILE ILE A . n A 1 276 GLU 276 270 270 GLU GLU A . n A 1 277 GLU 277 271 271 GLU GLU A . n A 1 278 SER 278 272 272 SER SER A . n A 1 279 TYR 279 273 273 TYR TYR A . n A 1 280 TYR 280 274 274 TYR TYR A . n A 1 281 LYS 281 275 275 LYS LYS A . n A 1 282 LEU 282 276 276 LEU LEU A . n A 1 283 ASP 283 277 277 ASP ASP A . n A 1 284 LYS 284 278 278 LYS LYS A . n A 1 285 ARG 285 279 279 ARG ARG A . n A 1 286 ILE 286 280 280 ILE ILE A . n A 1 287 PRO 287 281 281 PRO PRO A . n A 1 288 LYS 288 282 282 LYS LYS A . n A 1 289 ALA 289 283 283 ALA ALA A . n A 1 290 ILE 290 284 284 ILE ILE A . n A 1 291 HIS 291 285 285 HIS HIS A . n A 1 292 VAL 292 286 286 VAL VAL A . n A 1 293 VAL 293 287 287 VAL VAL A . n A 1 294 ALA 294 288 288 ALA ALA A . n A 1 295 VAL 295 289 289 VAL VAL A . n A 1 296 THR 296 290 290 THR THR A . n A 1 297 GLU 297 291 291 GLU GLU A . n A 1 298 ASP 298 292 292 ASP ASP A . n A 1 299 LEU 299 293 293 LEU LEU A . n A 1 300 ASP 300 294 294 ASP ASP A . n A 1 301 ILE 301 295 295 ILE ILE A . n A 1 302 VAL 302 296 296 VAL VAL A . n A 1 303 SER 303 297 297 SER SER A . n A 1 304 ARG 304 298 298 ARG ARG A . n A 1 305 GLY 305 299 299 GLY GLY A . n A 1 306 ARG 306 300 300 ARG ARG A . n A 1 307 THR 307 301 301 THR THR A . n A 1 308 PHE 308 302 302 PHE PHE A . n A 1 309 PRO 309 303 303 PRO PRO A . n A 1 310 HIS 310 304 304 HIS HIS A . n A 1 311 GLY 311 305 305 GLY GLY A . n A 1 312 ILE 312 306 306 ILE ILE A . n A 1 313 SER 313 307 307 SER SER A . n A 1 314 LYS 314 308 308 LYS LYS A . n A 1 315 GLU 315 309 309 GLU GLU A . n A 1 316 THR 316 310 310 THR THR A . n A 1 317 ALA 317 311 311 ALA ALA A . n A 1 318 TYR 318 312 312 TYR TYR A . n A 1 319 SER 319 313 313 SER SER A . n A 1 320 GLU 320 314 314 GLU GLU A . n A 1 321 SER 321 315 315 SER SER A . n A 1 322 VAL 322 316 316 VAL VAL A . n A 1 323 LYS 323 317 317 LYS LYS A . n A 1 324 LEU 324 318 318 LEU LEU A . n A 1 325 LEU 325 319 319 LEU LEU A . n A 1 326 GLN 326 320 320 GLN GLN A . n A 1 327 LYS 327 321 321 LYS LYS A . n A 1 328 ILE 328 322 322 ILE ILE A . n A 1 329 LEU 329 323 323 LEU LEU A . n A 1 330 GLU 330 324 324 GLU GLU A . n A 1 331 GLU 331 325 325 GLU GLU A . n A 1 332 ASP 332 326 326 ASP ASP A . n A 1 333 GLU 333 327 327 GLU GLU A . n A 1 334 ARG 334 328 328 ARG ARG A . n A 1 335 LYS 335 329 329 LYS LYS A . n A 1 336 ILE 336 330 330 ILE ILE A . n A 1 337 ARG 337 331 331 ARG ARG A . n A 1 338 ARG 338 332 332 ARG ARG A . n A 1 339 ILE 339 333 333 ILE ILE A . n A 1 340 GLY 340 334 334 GLY GLY A . n A 1 341 VAL 341 335 335 VAL VAL A . n A 1 342 ARG 342 336 336 ARG ARG A . n A 1 343 PHE 343 337 337 PHE PHE A . n A 1 344 SER 344 338 338 SER SER A . n A 1 345 LYS 345 339 339 LYS LYS A . n A 1 346 PHE 346 340 340 PHE PHE A . n A 1 347 ILE 347 341 341 ILE ILE A . n B 2 1 DT 1 4 4 DT DT B . n B 2 2 KAG 2 5 5 KAG KAG B . n B 2 3 DG 3 6 6 DG DG B . n B 2 4 DA 4 7 7 DA DA B . n B 2 5 DA 5 8 8 DA DA B . n B 2 6 DT 6 9 9 DT DT B . n B 2 7 DC 7 10 10 DC DC B . n B 2 8 DC 8 11 11 DC DC B . n B 2 9 DT 9 12 12 DT DT B . n B 2 10 DT 10 13 13 DT DT B . n B 2 11 DC 11 14 14 DC DC B . n B 2 12 DC 12 15 15 DC DC B . n B 2 13 DC 13 16 16 DC DC B . n B 2 14 DC 14 17 17 DC DC B . n B 2 15 DC 15 18 18 DC DC B . n C 3 1 DG 1 19 19 DG DG C . n C 3 2 DG 2 20 20 DG DG C . n C 3 3 DG 3 21 21 DG DG C . n C 3 4 DG 4 22 22 DG DG C . n C 3 5 DG 5 23 23 DG DG C . n C 3 6 DA 6 24 24 DA DA C . n C 3 7 DA 7 25 25 DA DA C . n C 3 8 DG 8 26 26 DG DG C . n C 3 9 DG 9 27 27 DG DG C . n C 3 10 DA 10 28 28 DA DA C . n C 3 11 DT 11 29 29 DT DT C . n C 3 12 DT 12 30 30 DT DT C . n C 3 13 DC 13 31 31 DC DC C . n C 3 14 DC 14 32 32 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DTP 1 1000 1000 DTP DTP A . E 5 CA 1 1001 1001 CA CA A . F 5 CA 1 1002 1002 CA CA A . G 6 HOH 1 1101 342 HOH HOH A . G 6 HOH 2 1102 343 HOH HOH A . G 6 HOH 3 1103 344 HOH HOH A . G 6 HOH 4 1104 345 HOH HOH A . G 6 HOH 5 1105 346 HOH HOH A . G 6 HOH 6 1106 347 HOH HOH A . G 6 HOH 7 1107 348 HOH HOH A . G 6 HOH 8 1108 349 HOH HOH A . G 6 HOH 9 1109 350 HOH HOH A . G 6 HOH 10 1110 351 HOH HOH A . G 6 HOH 11 1111 352 HOH HOH A . G 6 HOH 12 1112 353 HOH HOH A . G 6 HOH 13 1113 354 HOH HOH A . G 6 HOH 14 1114 355 HOH HOH A . G 6 HOH 15 1115 356 HOH HOH A . G 6 HOH 16 1116 357 HOH HOH A . G 6 HOH 17 1117 358 HOH HOH A . G 6 HOH 18 1118 359 HOH HOH A . G 6 HOH 19 1119 360 HOH HOH A . G 6 HOH 20 1120 361 HOH HOH A . G 6 HOH 21 1121 362 HOH HOH A . G 6 HOH 22 1122 363 HOH HOH A . G 6 HOH 23 1123 364 HOH HOH A . G 6 HOH 24 1124 365 HOH HOH A . G 6 HOH 25 1125 366 HOH HOH A . H 6 HOH 1 101 25 HOH HOH B . H 6 HOH 2 102 1 HOH HOH B . H 6 HOH 3 103 29 HOH HOH B . H 6 HOH 4 104 30 HOH HOH B . H 6 HOH 5 105 32 HOH HOH B . H 6 HOH 6 106 33 HOH HOH B . H 6 HOH 7 107 34 HOH HOH B . H 6 HOH 8 108 35 HOH HOH B . H 6 HOH 9 109 38 HOH HOH B . H 6 HOH 10 110 39 HOH HOH B . H 6 HOH 11 111 40 HOH HOH B . I 6 HOH 1 101 4 HOH HOH C . I 6 HOH 2 102 18 HOH HOH C . I 6 HOH 3 103 33 HOH HOH C . I 6 HOH 4 104 34 HOH HOH C . I 6 HOH 5 105 35 HOH HOH C . I 6 HOH 6 106 41 HOH HOH C . I 6 HOH 7 107 43 HOH HOH C . I 6 HOH 8 108 45 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id KAG _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id KAG _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6070 ? 1 MORE -52 ? 1 'SSA (A^2)' 19890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 74.0 ? 2 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O1G ? D DTP . ? A DTP 1000 ? 1_555 137.6 ? 3 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O1G ? D DTP . ? A DTP 1000 ? 1_555 129.4 ? 4 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O1A ? D DTP . ? A DTP 1000 ? 1_555 125.9 ? 5 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O1A ? D DTP . ? A DTP 1000 ? 1_555 57.6 ? 6 O1G ? D DTP . ? A DTP 1000 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O1A ? D DTP . ? A DTP 1000 ? 1_555 73.3 ? 7 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 102.6 ? 8 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 67.5 ? 9 O1G ? D DTP . ? A DTP 1000 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 118.7 ? 10 O1A ? D DTP . ? A DTP 1000 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 81.1 ? 11 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O2B ? D DTP . ? A DTP 1000 ? 1_555 76.3 ? 12 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O2B ? D DTP . ? A DTP 1000 ? 1_555 72.6 ? 13 O1G ? D DTP . ? A DTP 1000 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O2B ? D DTP . ? A DTP 1000 ? 1_555 79.0 ? 14 O1A ? D DTP . ? A DTP 1000 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O2B ? D DTP . ? A DTP 1000 ? 1_555 68.0 ? 15 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 1001 ? 1_555 O2B ? D DTP . ? A DTP 1000 ? 1_555 138.5 ? 16 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? A ALA 187 ? A ALA 181 ? 1_555 74.1 ? 17 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? I HOH . ? C HOH 101 ? 1_555 65.7 ? 18 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? I HOH . ? C HOH 101 ? 1_555 67.4 ? 19 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1101 ? 1_555 128.1 ? 20 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1101 ? 1_555 70.0 ? 21 O ? I HOH . ? C HOH 101 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1101 ? 1_555 66.5 ? 22 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1102 ? 1_555 88.7 ? 23 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1102 ? 1_555 88.4 ? 24 O ? I HOH . ? C HOH 101 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1102 ? 1_555 148.3 ? 25 O ? G HOH . ? A HOH 1101 ? 1_555 CA ? F CA . ? A CA 1002 ? 1_555 O ? G HOH . ? A HOH 1102 ? 1_555 125.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-28 2 'Structure model' 1 1 2013-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1121 ? ? O B HOH 105 ? ? 1.98 2 1 OE1 A GLU 106 ? ? O A HOH 1122 ? ? 2.00 3 1 O A ILE 2 ? ? O A HOH 1123 ? ? 2.05 4 1 NH2 A ARG 36 ? ? OD1 A ASN 254 ? ? 2.07 5 1 NH1 A ARG 242 ? ? OP1 B DA 8 ? ? 2.10 6 1 O1A A DTP 1000 ? ? O A HOH 1122 ? ? 2.12 7 1 O B HOH 110 ? ? O B HOH 111 ? ? 2.14 8 1 O B HOH 105 ? ? O B HOH 106 ? ? 2.15 9 1 O A LEU 202 ? ? OG1 A THR 205 ? ? 2.16 10 1 OD2 A ASP 294 ? ? O A HOH 1116 ? ? 2.18 11 1 NH2 A ARG 267 ? ? O A HOH 1111 ? ? 2.18 12 1 N A ILE 111 ? ? O A HOH 1123 ? ? 2.19 13 1 O A HOH 1121 ? ? O B HOH 104 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.382 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" B DT 4 ? ? P B KAG 5 ? ? OP2 B KAG 5 ? ? 88.32 105.20 -16.88 2.20 Y 2 1 "O3'" B DT 4 ? ? P B KAG 5 ? ? OP1 B KAG 5 ? ? 134.25 110.50 23.75 1.10 Y 3 1 "O5'" B DG 6 ? ? "C5'" B DG 6 ? ? "C4'" B DG 6 ? ? 102.63 109.40 -6.77 0.80 N 4 1 "C1'" B DA 7 ? ? "O4'" B DA 7 ? ? "C4'" B DA 7 ? ? 103.31 110.10 -6.79 1.00 N 5 1 "C3'" B DA 7 ? ? "C2'" B DA 7 ? ? "C1'" B DA 7 ? ? 97.54 102.40 -4.86 0.80 N 6 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? "C2'" B DA 7 ? ? 98.09 105.90 -7.81 0.80 N 7 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 114.03 108.30 5.73 0.30 N 8 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 102.56 108.00 -5.44 0.70 N 9 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 112.94 108.30 4.64 0.30 N 10 1 N3 B DT 12 ? ? C4 B DT 12 ? ? O4 B DT 12 ? ? 123.80 119.90 3.90 0.60 N 11 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? 101.69 104.50 -2.81 0.40 N 12 1 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 102.75 110.10 -7.35 1.00 N 13 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 114.09 108.30 5.79 0.30 N 14 1 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 96.08 102.40 -6.32 0.80 N 15 1 "O4'" C DG 21 ? ? "C1'" C DG 21 ? ? N9 C DG 21 ? ? 111.53 108.30 3.23 0.30 N 16 1 "O4'" C DG 22 ? ? "C1'" C DG 22 ? ? N9 C DG 22 ? ? 112.21 108.30 3.91 0.30 N 17 1 "O5'" C DA 24 ? ? "C5'" C DA 24 ? ? "C4'" C DA 24 ? ? 103.49 109.40 -5.91 0.80 N 18 1 "O4'" C DC 31 ? ? "C1'" C DC 31 ? ? N1 C DC 31 ? ? 114.34 108.30 6.04 0.30 N 19 1 "O4'" C DC 32 ? ? "C1'" C DC 32 ? ? N1 C DC 32 ? ? 115.99 108.30 7.69 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 24.12 51.52 2 1 ASN A 20 ? ? -165.30 78.40 3 1 ARG A 36 ? ? -72.65 -80.43 4 1 LEU A 68 ? ? -118.71 63.12 5 1 ARG A 93 ? ? -56.09 -9.61 6 1 ASP A 105 ? ? -143.09 12.58 7 1 ASP A 113 ? ? -64.88 10.21 8 1 ASP A 117 ? ? -173.13 -173.54 9 1 SER A 145 ? ? -166.42 -161.96 10 1 ASN A 161 ? ? 45.26 23.63 11 1 ASP A 231 ? ? 30.96 53.60 12 1 GLU A 232 ? ? -141.89 12.47 13 1 ASN A 234 ? ? -158.73 45.24 14 1 ASP A 277 ? ? 53.16 86.94 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id KAG _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 5 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id C1M _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id KAG _pdbx_unobs_or_zero_occ_atoms.label_seq_id 2 _pdbx_unobs_or_zero_occ_atoms.label_atom_id C1M # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A HIS -1 ? A HIS 5 6 1 Y 1 A HIS 0 ? A HIS 6 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4JV0 'double helix' 4JV0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B KAG 2 1_555 C DC 14 1_555 0.861 -0.092 -0.384 -3.333 -10.122 2.169 1 B_KAG5:DC32_C B 5 ? C 32 ? 19 1 1 B DG 3 1_555 C DC 13 1_555 -0.807 -0.308 -0.486 -11.809 -9.733 2.911 2 B_DG6:DC31_C B 6 ? C 31 ? 19 1 1 B DA 4 1_555 C DT 12 1_555 -0.278 -0.187 -0.447 -6.994 -0.126 1.403 3 B_DA7:DT30_C B 7 ? C 30 ? 20 1 1 B DA 5 1_555 C DT 11 1_555 0.018 -0.111 0.054 0.191 -12.836 4.941 4 B_DA8:DT29_C B 8 ? C 29 ? 20 1 1 B DT 6 1_555 C DA 10 1_555 -0.231 -0.230 -0.161 9.757 -8.254 2.907 5 B_DT9:DA28_C B 9 ? C 28 ? 20 1 1 B DC 7 1_555 C DG 9 1_555 -0.171 -0.347 -0.041 4.514 -16.088 0.185 6 B_DC10:DG27_C B 10 ? C 27 ? 19 1 1 B DC 8 1_555 C DG 8 1_555 -0.579 -0.488 0.383 -6.604 -7.550 -6.542 7 B_DC11:DG26_C B 11 ? C 26 ? 19 1 1 B DT 9 1_555 C DA 7 1_555 -0.338 -0.206 0.197 -3.972 -7.409 -2.576 8 B_DT12:DA25_C B 12 ? C 25 ? 20 1 1 B DT 10 1_555 C DA 6 1_555 -0.428 -0.302 0.214 -5.104 -11.522 -5.279 9 B_DT13:DA24_C B 13 ? C 24 ? 20 1 1 B DC 11 1_555 C DG 5 1_555 -0.129 -0.261 0.380 -3.842 -9.477 4.480 10 B_DC14:DG23_C B 14 ? C 23 ? 19 1 1 B DC 12 1_555 C DG 4 1_555 -0.074 -0.170 0.513 -16.427 -10.344 -0.375 11 B_DC15:DG22_C B 15 ? C 22 ? 19 1 1 B DC 13 1_555 C DG 3 1_555 0.099 -0.263 -0.103 -3.600 -6.227 -8.790 12 B_DC16:DG21_C B 16 ? C 21 ? 19 1 1 B DC 14 1_555 C DG 2 1_555 0.175 -0.369 -0.220 0.136 -7.570 1.453 13 B_DC17:DG20_C B 17 ? C 20 ? 19 1 1 B DC 15 1_555 C DG 1 1_555 -0.075 -0.297 -0.255 3.279 -7.642 -9.435 14 B_DC18:DG19_C B 18 ? C 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B KAG 2 1_555 C DC 14 1_555 B DG 3 1_555 C DC 13 1_555 0.019 -1.112 3.604 1.720 12.187 20.934 -6.561 0.508 2.566 30.387 -4.289 24.249 1 BB_KAG5DG6:DC31DC32_CC B 5 ? C 32 ? B 6 ? C 31 ? 1 B DG 3 1_555 C DC 13 1_555 B DA 4 1_555 C DT 12 1_555 -0.074 -0.352 3.271 -2.215 7.557 29.148 -2.196 -0.303 3.081 14.680 4.303 30.171 2 BB_DG6DA7:DT30DC31_CC B 6 ? C 31 ? B 7 ? C 30 ? 1 B DA 4 1_555 C DT 12 1_555 B DA 5 1_555 C DT 11 1_555 -0.523 -0.337 3.248 -2.825 -0.106 36.935 -0.517 0.444 3.278 -0.168 4.452 37.039 3 BB_DA7DA8:DT29DT30_CC B 7 ? C 30 ? B 8 ? C 29 ? 1 B DA 5 1_555 C DT 11 1_555 B DT 6 1_555 C DA 10 1_555 0.022 -0.690 3.104 -0.024 5.197 26.498 -2.709 -0.054 2.918 11.200 0.052 26.994 4 BB_DA8DT9:DA28DT29_CC B 8 ? C 29 ? B 9 ? C 28 ? 1 B DT 6 1_555 C DA 10 1_555 B DC 7 1_555 C DG 9 1_555 0.115 -0.220 3.411 -2.185 -3.061 37.703 0.071 -0.469 3.406 -4.723 3.370 37.883 5 BB_DT9DC10:DG27DA28_CC B 9 ? C 28 ? B 10 ? C 27 ? 1 B DC 7 1_555 C DG 9 1_555 B DC 8 1_555 C DG 8 1_555 -0.430 -0.890 3.701 -2.048 5.334 31.721 -2.663 0.369 3.529 9.661 3.709 32.218 6 BB_DC10DC11:DG26DG27_CC B 10 ? C 27 ? B 11 ? C 26 ? 1 B DC 8 1_555 C DG 8 1_555 B DT 9 1_555 C DA 7 1_555 0.252 -0.202 3.311 1.000 -0.624 34.157 -0.243 -0.269 3.320 -1.063 -1.703 34.177 7 BB_DC11DT12:DA25DG26_CC B 11 ? C 26 ? B 12 ? C 25 ? 1 B DT 9 1_555 C DA 7 1_555 B DT 10 1_555 C DA 6 1_555 0.350 -0.531 3.238 2.045 5.033 32.440 -1.782 -0.275 3.138 8.931 -3.629 32.880 8 BB_DT12DT13:DA24DA25_CC B 12 ? C 25 ? B 13 ? C 24 ? 1 B DT 10 1_555 C DA 6 1_555 B DC 11 1_555 C DG 5 1_555 0.618 -0.390 3.215 -2.675 7.082 35.420 -1.590 -1.358 3.030 11.478 4.335 36.194 9 BB_DT13DC14:DG23DA24_CC B 13 ? C 24 ? B 14 ? C 23 ? 1 B DC 11 1_555 C DG 5 1_555 B DC 12 1_555 C DG 4 1_555 -0.276 -0.877 3.512 0.838 5.294 29.088 -2.896 0.727 3.295 10.429 -1.652 29.568 10 BB_DC14DC15:DG22DG23_CC B 14 ? C 23 ? B 15 ? C 22 ? 1 B DC 12 1_555 C DG 4 1_555 B DC 13 1_555 C DG 3 1_555 -0.833 -0.481 3.019 4.332 5.615 31.450 -1.762 2.190 2.757 10.198 -7.867 32.220 11 BB_DC15DC16:DG21DG22_CC B 15 ? C 22 ? B 16 ? C 21 ? 1 B DC 13 1_555 C DG 3 1_555 B DC 14 1_555 C DG 2 1_555 1.614 -0.299 3.284 4.106 9.570 30.486 -2.291 -2.160 3.230 17.567 -7.537 32.175 12 BB_DC16DC17:DG20DG21_CC B 16 ? C 21 ? B 17 ? C 20 ? 1 B DC 14 1_555 C DG 2 1_555 B DC 15 1_555 C DG 1 1_555 -1.210 -0.046 3.337 -2.854 3.311 32.124 -0.686 1.647 3.407 5.949 5.128 32.412 13 BB_DC17DC18:DG19DG20_CC B 17 ? C 20 ? B 18 ? C 19 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; DTP 5 'CALCIUM ION' CA 6 water HOH #