data_4JVE # _entry.id 4JVE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JVE RCSB RCSB078552 WWPDB D_1000078552 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JV7 . unspecified PDB 4JV9 . unspecified PDB 4JVR . unspecified PDB 4JWR . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JVE _pdbx_database_status.recvd_initial_deposition_date 2013-03-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, X.' 1 'Gonzalez-Lopez de Turiso, F.' 2 'Sun, D.' 3 'Yosup, R.' 4 'Bartberger, M.D.' 5 'Beck, H.P.' 6 'Cannon, J.' 7 'Shaffer, P.' 8 'Oliner, J.D.' 9 'Olson, S.H.' 10 'Medina, J.C.' 11 # _citation.id primary _citation.title 'Rational Design and Binding Mode Duality of MDM2-p53 Inhibitors.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 4053 _citation.page_last 4070 _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23597064 _citation.pdbx_database_id_DOI 10.1021/jm400293z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gonzalez-Lopez de Turiso, F.' 1 primary 'Sun, D.' 2 primary 'Rew, Y.' 3 primary 'Bartberger, M.D.' 4 primary 'Beck, H.P.' 5 primary 'Canon, J.' 6 primary 'Chen, A.' 7 primary 'Chow, D.' 8 primary 'Correll, T.L.' 9 primary 'Huang, X.' 10 primary 'Julian, L.D.' 11 primary 'Kayser, F.' 12 primary 'Lo, M.C.' 13 primary 'Long, A.M.' 14 primary 'McMinn, D.' 15 primary 'Oliner, J.D.' 16 primary 'Osgood, T.' 17 primary 'Powers, J.P.' 18 primary 'Saiki, A.Y.' 19 primary 'Schneider, S.' 20 primary 'Shaffer, P.' 21 primary 'Xiao, S.H.' 22 primary 'Yakowec, P.' 23 primary 'Yan, X.' 24 primary 'Ye, Q.' 25 primary 'Yu, D.' 26 primary 'Zhao, X.' 27 primary 'Zhou, J.' 28 primary 'Medina, J.C.' 29 primary 'Olson, S.H.' 30 # _cell.entry_id 4JVE _cell.length_a 42.014 _cell.length_b 42.014 _cell.length_c 119.418 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JVE _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 11156.052 1 6.3.2.- ? 'UNP residues 18-111' ? 2 non-polymer syn '(2R,3E)-2-[(2S,3R,6S)-2,3-bis(4-chlorophenyl)-6-(4-fluorobenzyl)-5-oxomorpholin-4-yl]pent-3-enoic acid' 528.399 1 ? ? ? ? 3 water nat water 18.015 40 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVNGS ; _entity_poly.pdbx_seq_one_letter_code_can ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVNGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 PRO n 1 4 ALA n 1 5 SER n 1 6 GLU n 1 7 GLN n 1 8 GLU n 1 9 THR n 1 10 LEU n 1 11 VAL n 1 12 ARG n 1 13 PRO n 1 14 LYS n 1 15 PRO n 1 16 LEU n 1 17 LEU n 1 18 LEU n 1 19 LYS n 1 20 LEU n 1 21 LEU n 1 22 LYS n 1 23 SER n 1 24 VAL n 1 25 GLY n 1 26 ALA n 1 27 GLN n 1 28 LYS n 1 29 ASP n 1 30 THR n 1 31 TYR n 1 32 THR n 1 33 MET n 1 34 LYS n 1 35 GLU n 1 36 VAL n 1 37 LEU n 1 38 PHE n 1 39 TYR n 1 40 LEU n 1 41 GLY n 1 42 GLN n 1 43 TYR n 1 44 ILE n 1 45 MET n 1 46 THR n 1 47 LYS n 1 48 ARG n 1 49 LEU n 1 50 TYR n 1 51 ASP n 1 52 GLU n 1 53 LYS n 1 54 GLN n 1 55 GLN n 1 56 HIS n 1 57 ILE n 1 58 VAL n 1 59 TYR n 1 60 CYS n 1 61 SER n 1 62 ASN n 1 63 ASP n 1 64 LEU n 1 65 LEU n 1 66 GLY n 1 67 ASP n 1 68 LEU n 1 69 PHE n 1 70 GLY n 1 71 VAL n 1 72 PRO n 1 73 SER n 1 74 PHE n 1 75 SER n 1 76 VAL n 1 77 LYS n 1 78 GLU n 1 79 HIS n 1 80 ARG n 1 81 LYS n 1 82 ILE n 1 83 TYR n 1 84 THR n 1 85 MET n 1 86 ILE n 1 87 TYR n 1 88 ARG n 1 89 ASN n 1 90 LEU n 1 91 VAL n 1 92 VAL n 1 93 VAL n 1 94 ASN n 1 95 GLY n 1 96 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MDM2_HUMAN _struct_ref.pdbx_db_accession Q00987 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVN ; _struct_ref.pdbx_align_begin 18 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JVE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00987 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 18 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JVE GLY A 95 ? UNP Q00987 ? ? 'EXPRESSION TAG' 112 1 1 4JVE SER A 96 ? UNP Q00987 ? ? 'EXPRESSION TAG' 113 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MQ non-polymer . '(2R,3E)-2-[(2S,3R,6S)-2,3-bis(4-chlorophenyl)-6-(4-fluorobenzyl)-5-oxomorpholin-4-yl]pent-3-enoic acid' ? 'C28 H24 Cl2 F N O4' 528.399 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JVE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '100 mM Bicine, pH 9.0, 1.6 M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4JVE _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.30 _reflns.number_obs 5254 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.424 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JVE _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8 _refine.ls_number_reflns_obs 5147 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.268 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.298 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 238 _refine.ls_number_reflns_R_work 4909 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.9861 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.9260 _refine.aniso_B[2][2] 0.9260 _refine.aniso_B[3][3] -1.8520 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 71.390 _refine.B_iso_min 8.410 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 754 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 830 _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_mcbond_it ? 1.511 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.234 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 2.358 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.318 2.500 ? ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 mdm2.param ? 'X-RAY DIFFRACTION' 2 2206089.xprm ? 'X-RAY DIFFRACTION' 3 MSI_CNX_TOPPAR:water_rep.param ? # _struct.entry_id 4JVE _struct.title ;Co-crystal structure of MDM2 with inhibitor (2R,3E)-2-[(2S,3R,6S)-2,3-bis(4-chlorophenyl)-6-(4-fluorobenzyl)-5-oxomorpholin-4-yl]pent-3-enoic acid ; _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JVE _struct_keywords.pdbx_keywords 'LIGASE/LIGASE INHIBITOR' _struct_keywords.text 'p53, protein-protein interaction, LIGASE-LIGASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 3 ? THR A 9 ? PRO A 20 THR A 26 1 ? 7 HELX_P HELX_P2 2 LYS A 14 ? VAL A 24 ? LYS A 31 VAL A 41 1 ? 11 HELX_P HELX_P3 3 MET A 33 ? LYS A 47 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P4 4 ASP A 63 ? LEU A 68 ? ASP A 80 LEU A 85 1 ? 6 HELX_P HELX_P5 5 GLU A 78 ? ASN A 89 ? GLU A 95 ASN A 106 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 60 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 60 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 77 _struct_conn.ptnr2_symmetry 7_646 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.684 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 31 ? THR A 32 ? TYR A 48 THR A 49 A 2 LEU A 10 ? PRO A 13 ? LEU A 27 PRO A 30 A 3 LEU A 90 ? VAL A 92 ? LEU A 107 VAL A 109 B 1 HIS A 56 ? ILE A 57 ? HIS A 73 ILE A 74 B 2 PHE A 74 ? SER A 75 ? PHE A 91 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 31 ? O TYR A 48 N VAL A 11 ? N VAL A 28 A 2 3 N ARG A 12 ? N ARG A 29 O VAL A 91 ? O VAL A 108 B 1 2 N ILE A 57 ? N ILE A 74 O PHE A 74 ? O PHE A 91 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE 1MQ A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 12 ? ARG A 29 . ? 6_445 ? 2 AC1 10 LEU A 37 ? LEU A 54 . ? 1_555 ? 3 AC1 10 PHE A 38 ? PHE A 55 . ? 1_555 ? 4 AC1 10 LEU A 40 ? LEU A 57 . ? 1_555 ? 5 AC1 10 GLY A 41 ? GLY A 58 . ? 1_555 ? 6 AC1 10 GLN A 42 ? GLN A 59 . ? 1_555 ? 7 AC1 10 MET A 45 ? MET A 62 . ? 1_555 ? 8 AC1 10 ILE A 82 ? ILE A 99 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 314 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 336 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JVE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JVE _atom_sites.fract_transf_matrix[1][1] 0.023802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023802 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008374 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 18 18 GLN GLN A . n A 1 2 ILE 2 19 19 ILE ILE A . n A 1 3 PRO 3 20 20 PRO PRO A . n A 1 4 ALA 4 21 21 ALA ALA A . n A 1 5 SER 5 22 22 SER SER A . n A 1 6 GLU 6 23 23 GLU GLU A . n A 1 7 GLN 7 24 24 GLN GLN A . n A 1 8 GLU 8 25 25 GLU GLU A . n A 1 9 THR 9 26 26 THR THR A . n A 1 10 LEU 10 27 27 LEU LEU A . n A 1 11 VAL 11 28 28 VAL VAL A . n A 1 12 ARG 12 29 29 ARG ARG A . n A 1 13 PRO 13 30 30 PRO PRO A . n A 1 14 LYS 14 31 31 LYS LYS A . n A 1 15 PRO 15 32 32 PRO PRO A . n A 1 16 LEU 16 33 33 LEU LEU A . n A 1 17 LEU 17 34 34 LEU LEU A . n A 1 18 LEU 18 35 35 LEU LEU A . n A 1 19 LYS 19 36 36 LYS LYS A . n A 1 20 LEU 20 37 37 LEU LEU A . n A 1 21 LEU 21 38 38 LEU LEU A . n A 1 22 LYS 22 39 39 LYS LYS A . n A 1 23 SER 23 40 40 SER SER A . n A 1 24 VAL 24 41 41 VAL VAL A . n A 1 25 GLY 25 42 42 GLY GLY A . n A 1 26 ALA 26 43 43 ALA ALA A . n A 1 27 GLN 27 44 44 GLN GLN A . n A 1 28 LYS 28 45 45 LYS LYS A . n A 1 29 ASP 29 46 46 ASP ASP A . n A 1 30 THR 30 47 47 THR THR A . n A 1 31 TYR 31 48 48 TYR TYR A . n A 1 32 THR 32 49 49 THR THR A . n A 1 33 MET 33 50 50 MET MET A . n A 1 34 LYS 34 51 51 LYS LYS A . n A 1 35 GLU 35 52 52 GLU GLU A . n A 1 36 VAL 36 53 53 VAL VAL A . n A 1 37 LEU 37 54 54 LEU LEU A . n A 1 38 PHE 38 55 55 PHE PHE A . n A 1 39 TYR 39 56 56 TYR TYR A . n A 1 40 LEU 40 57 57 LEU LEU A . n A 1 41 GLY 41 58 58 GLY GLY A . n A 1 42 GLN 42 59 59 GLN GLN A . n A 1 43 TYR 43 60 60 TYR TYR A . n A 1 44 ILE 44 61 61 ILE ILE A . n A 1 45 MET 45 62 62 MET MET A . n A 1 46 THR 46 63 63 THR THR A . n A 1 47 LYS 47 64 64 LYS LYS A . n A 1 48 ARG 48 65 65 ARG ARG A . n A 1 49 LEU 49 66 66 LEU LEU A . n A 1 50 TYR 50 67 67 TYR TYR A . n A 1 51 ASP 51 68 68 ASP ASP A . n A 1 52 GLU 52 69 69 GLU GLU A . n A 1 53 LYS 53 70 70 LYS LYS A . n A 1 54 GLN 54 71 71 GLN GLN A . n A 1 55 GLN 55 72 72 GLN GLN A . n A 1 56 HIS 56 73 73 HIS HIS A . n A 1 57 ILE 57 74 74 ILE ILE A . n A 1 58 VAL 58 75 75 VAL VAL A . n A 1 59 TYR 59 76 76 TYR TYR A . n A 1 60 CYS 60 77 77 CYS CYS A . n A 1 61 SER 61 78 78 SER SER A . n A 1 62 ASN 62 79 79 ASN ASN A . n A 1 63 ASP 63 80 80 ASP ASP A . n A 1 64 LEU 64 81 81 LEU LEU A . n A 1 65 LEU 65 82 82 LEU LEU A . n A 1 66 GLY 66 83 83 GLY GLY A . n A 1 67 ASP 67 84 84 ASP ASP A . n A 1 68 LEU 68 85 85 LEU LEU A . n A 1 69 PHE 69 86 ? ? ? A . n A 1 70 GLY 70 87 87 GLY GLY A . n A 1 71 VAL 71 88 88 VAL VAL A . n A 1 72 PRO 72 89 89 PRO PRO A . n A 1 73 SER 73 90 90 SER SER A . n A 1 74 PHE 74 91 91 PHE PHE A . n A 1 75 SER 75 92 92 SER SER A . n A 1 76 VAL 76 93 93 VAL VAL A . n A 1 77 LYS 77 94 94 LYS LYS A . n A 1 78 GLU 78 95 95 GLU GLU A . n A 1 79 HIS 79 96 96 HIS HIS A . n A 1 80 ARG 80 97 97 ARG ARG A . n A 1 81 LYS 81 98 98 LYS LYS A . n A 1 82 ILE 82 99 99 ILE ILE A . n A 1 83 TYR 83 100 100 TYR TYR A . n A 1 84 THR 84 101 101 THR THR A . n A 1 85 MET 85 102 102 MET MET A . n A 1 86 ILE 86 103 103 ILE ILE A . n A 1 87 TYR 87 104 104 TYR TYR A . n A 1 88 ARG 88 105 105 ARG ARG A . n A 1 89 ASN 89 106 106 ASN ASN A . n A 1 90 LEU 90 107 107 LEU LEU A . n A 1 91 VAL 91 108 108 VAL VAL A . n A 1 92 VAL 92 109 109 VAL VAL A . n A 1 93 VAL 93 110 110 VAL VAL A . n A 1 94 ASN 94 111 ? ? ? A . n A 1 95 GLY 95 112 ? ? ? A . n A 1 96 SER 96 113 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-01 2 'Structure model' 1 1 2013-06-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 CNS refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 26 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -37.12 _pdbx_validate_torsion.psi 120.02 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 86 ? A PHE 69 2 1 Y 1 A ASN 111 ? A ASN 94 3 1 Y 1 A GLY 112 ? A GLY 95 4 1 Y 1 A SER 113 ? A SER 96 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2R,3E)-2-[(2S,3R,6S)-2,3-bis(4-chlorophenyl)-6-(4-fluorobenzyl)-5-oxomorpholin-4-yl]pent-3-enoic acid' 1MQ 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1MQ 1 201 1 1MQ INH A . C 3 HOH 1 301 3 HOH HOH A . C 3 HOH 2 302 10 HOH HOH A . C 3 HOH 3 303 14 HOH HOH A . C 3 HOH 4 304 16 HOH HOH A . C 3 HOH 5 305 21 HOH HOH A . C 3 HOH 6 306 25 HOH HOH A . C 3 HOH 7 307 26 HOH HOH A . C 3 HOH 8 308 30 HOH HOH A . C 3 HOH 9 309 34 HOH HOH A . C 3 HOH 10 310 38 HOH HOH A . C 3 HOH 11 311 40 HOH HOH A . C 3 HOH 12 312 44 HOH HOH A . C 3 HOH 13 313 46 HOH HOH A . C 3 HOH 14 314 48 HOH HOH A . C 3 HOH 15 315 52 HOH HOH A . C 3 HOH 16 316 53 HOH HOH A . C 3 HOH 17 317 57 HOH HOH A . C 3 HOH 18 318 59 HOH HOH A . C 3 HOH 19 319 60 HOH HOH A . C 3 HOH 20 320 63 HOH HOH A . C 3 HOH 21 321 64 HOH HOH A . C 3 HOH 22 322 65 HOH HOH A . C 3 HOH 23 323 66 HOH HOH A . C 3 HOH 24 324 67 HOH HOH A . C 3 HOH 25 325 68 HOH HOH A . C 3 HOH 26 326 69 HOH HOH A . C 3 HOH 27 327 74 HOH HOH A . C 3 HOH 28 328 75 HOH HOH A . C 3 HOH 29 329 76 HOH HOH A . C 3 HOH 30 330 78 HOH HOH A . C 3 HOH 31 331 79 HOH HOH A . C 3 HOH 32 332 80 HOH HOH A . C 3 HOH 33 333 85 HOH HOH A . C 3 HOH 34 334 86 HOH HOH A . C 3 HOH 35 335 88 HOH HOH A . C 3 HOH 36 336 89 HOH HOH A . C 3 HOH 37 337 90 HOH HOH A . C 3 HOH 38 338 96 HOH HOH A . C 3 HOH 39 339 97 HOH HOH A . C 3 HOH 40 340 100 HOH HOH A . #