data_4JVH # _entry.id 4JVH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JVH NDB NA2330 RCSB RCSB078555 WWPDB D_1000078555 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4JVY _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4JVH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teplova, M.' 1 'Hafner, M.' 2 'Teplov, D.' 3 'Essig, K.' 4 'Tuschl, T.' 5 'Patel, D.J.' 6 # _citation.id primary _citation.title 'Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 27 _citation.page_first 928 _citation.page_last 940 _citation.year 2013 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23630077 _citation.pdbx_database_id_DOI 10.1101/gad.216531.113 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Teplova, M.' 1 primary 'Hafner, M.' 2 primary 'Teplov, D.' 3 primary 'Essig, K.' 4 primary 'Tuschl, T.' 5 primary 'Patel, D.J.' 6 # _cell.length_a 98.634 _cell.length_b 98.634 _cell.length_c 103.137 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JVH _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 4JVH _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 178 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein quaking' 24202.705 1 ? ? 'STAR DOMAIN' ? 2 polymer syn ;RNA (5'-R(*UP*UP*CP*AP*CP*UP*AP*AP*CP*AP*A)-3') ; 3435.114 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hqk, HqkI' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;STKEKPKPTPDYL(MSE)QL(MSE)NDKKL(MSE)SSLPNFCGIFNHLERLLDEEISRVRKD(MSE)YNDTLNGSTEKRS AELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKI(MSE)VRGKGS(MSE)RDKKKEEQNRGK PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKK(MSE)QL(MSE)ELAILNGTYRDANIKSPA L ; ;STKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEK LYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAE IKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPAL ; A ? 2 polyribonucleotide no no UUCACUAACAA UUCACUAACAA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 LYS n 1 4 GLU n 1 5 LYS n 1 6 PRO n 1 7 LYS n 1 8 PRO n 1 9 THR n 1 10 PRO n 1 11 ASP n 1 12 TYR n 1 13 LEU n 1 14 MSE n 1 15 GLN n 1 16 LEU n 1 17 MSE n 1 18 ASN n 1 19 ASP n 1 20 LYS n 1 21 LYS n 1 22 LEU n 1 23 MSE n 1 24 SER n 1 25 SER n 1 26 LEU n 1 27 PRO n 1 28 ASN n 1 29 PHE n 1 30 CYS n 1 31 GLY n 1 32 ILE n 1 33 PHE n 1 34 ASN n 1 35 HIS n 1 36 LEU n 1 37 GLU n 1 38 ARG n 1 39 LEU n 1 40 LEU n 1 41 ASP n 1 42 GLU n 1 43 GLU n 1 44 ILE n 1 45 SER n 1 46 ARG n 1 47 VAL n 1 48 ARG n 1 49 LYS n 1 50 ASP n 1 51 MSE n 1 52 TYR n 1 53 ASN n 1 54 ASP n 1 55 THR n 1 56 LEU n 1 57 ASN n 1 58 GLY n 1 59 SER n 1 60 THR n 1 61 GLU n 1 62 LYS n 1 63 ARG n 1 64 SER n 1 65 ALA n 1 66 GLU n 1 67 LEU n 1 68 PRO n 1 69 ASP n 1 70 ALA n 1 71 VAL n 1 72 GLY n 1 73 PRO n 1 74 ILE n 1 75 VAL n 1 76 GLN n 1 77 LEU n 1 78 GLN n 1 79 GLU n 1 80 LYS n 1 81 LEU n 1 82 TYR n 1 83 VAL n 1 84 PRO n 1 85 VAL n 1 86 LYS n 1 87 GLU n 1 88 TYR n 1 89 PRO n 1 90 ASP n 1 91 PHE n 1 92 ASN n 1 93 PHE n 1 94 VAL n 1 95 GLY n 1 96 ARG n 1 97 ILE n 1 98 LEU n 1 99 GLY n 1 100 PRO n 1 101 ARG n 1 102 GLY n 1 103 LEU n 1 104 THR n 1 105 ALA n 1 106 LYS n 1 107 GLN n 1 108 LEU n 1 109 GLU n 1 110 ALA n 1 111 GLU n 1 112 THR n 1 113 GLY n 1 114 CYS n 1 115 LYS n 1 116 ILE n 1 117 MSE n 1 118 VAL n 1 119 ARG n 1 120 GLY n 1 121 LYS n 1 122 GLY n 1 123 SER n 1 124 MSE n 1 125 ARG n 1 126 ASP n 1 127 LYS n 1 128 LYS n 1 129 LYS n 1 130 GLU n 1 131 GLU n 1 132 GLN n 1 133 ASN n 1 134 ARG n 1 135 GLY n 1 136 LYS n 1 137 PRO n 1 138 ASN n 1 139 TRP n 1 140 GLU n 1 141 HIS n 1 142 LEU n 1 143 ASN n 1 144 GLU n 1 145 ASP n 1 146 LEU n 1 147 HIS n 1 148 VAL n 1 149 LEU n 1 150 ILE n 1 151 THR n 1 152 VAL n 1 153 GLU n 1 154 ASP n 1 155 ALA n 1 156 GLN n 1 157 ASN n 1 158 ARG n 1 159 ALA n 1 160 GLU n 1 161 ILE n 1 162 LYS n 1 163 LEU n 1 164 LYS n 1 165 ARG n 1 166 ALA n 1 167 VAL n 1 168 GLU n 1 169 GLU n 1 170 VAL n 1 171 LYS n 1 172 LYS n 1 173 LEU n 1 174 LEU n 1 175 VAL n 1 176 PRO n 1 177 ALA n 1 178 ALA n 1 179 GLU n 1 180 GLY n 1 181 GLU n 1 182 ASP n 1 183 SER n 1 184 LEU n 1 185 LYS n 1 186 LYS n 1 187 MSE n 1 188 GLN n 1 189 LEU n 1 190 MSE n 1 191 GLU n 1 192 LEU n 1 193 ALA n 1 194 ILE n 1 195 LEU n 1 196 ASN n 1 197 GLY n 1 198 THR n 1 199 TYR n 1 200 ARG n 1 201 ASP n 1 202 ALA n 1 203 ASN n 1 204 ILE n 1 205 LYS n 1 206 SER n 1 207 PRO n 1 208 ALA n 1 209 LEU n 2 1 U n 2 2 U n 2 3 C n 2 4 A n 2 5 C n 2 6 U n 2 7 A n 2 8 A n 2 9 C n 2 10 A n 2 11 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'QKI, HKQ' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP QKI_HUMAN Q96PU8 1 ;TKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKL YVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEI KLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY ; 7 ? 2 PDB 4JVH 4JVH 2 UUCACUAACAA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JVH A 2 ? 199 ? Q96PU8 7 ? 204 ? 7 204 2 2 4JVH D 1 ? 11 ? 4JVH 1 ? 11 ? 1 11 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4JVH _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q96PU8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 6 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JVH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG, pH 7.5, VAPOR DIFFUSION, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-02-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength 0.97920 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4JVH _reflns.B_iso_Wilson_estimate 120.130 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 3.5 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4JVH _refine.ls_d_res_high 3.5010 _refine.ls_d_res_low 19.7300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.7400 _refine.ls_number_reflns_obs 3983 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2496 _refine.ls_R_factor_R_work 0.2429 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.3156 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9700 _refine.ls_number_reflns_R_free 397 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 101.9961 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7236 _refine.B_iso_max 427.480 _refine.B_iso_min 6.320 _refine.pdbx_overall_phase_error 31.9100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.810 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1412 _refine_hist.pdbx_number_atoms_nucleic_acid 170 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1592 _refine_hist.d_res_high 3.5010 _refine_hist.d_res_low 19.7300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1628 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2222 0.871 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 253 0.054 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 257 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 670 16.501 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 3.5009 4.0038 3 97.0000 1139 . 0.2626 0.3455 . 127 . 1266 . . 'X-RAY DIFFRACTION' 4.0038 5.0305 3 99.0000 1179 . 0.2605 0.3230 . 130 . 1309 . . 'X-RAY DIFFRACTION' 5.0305 19.7304 3 99.0000 1268 . 0.2290 0.3035 . 140 . 1408 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JVH _struct.title 'Structure of the star domain of quaking protein in complex with RNA' _struct.pdbx_descriptor 'Protein quaking/RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JVH _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'STAR domain, RNA regulator, TRANSLATION, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? SER A 24 ? THR A 14 SER A 29 1 ? 16 HELX_P HELX_P2 2 HIS A 35 ? ASP A 54 ? HIS A 40 ASP A 59 1 ? 20 HELX_P HELX_P3 3 ASN A 92 ? GLY A 99 ? ASN A 97 GLY A 104 1 ? 8 HELX_P HELX_P4 4 GLY A 102 ? GLY A 113 ? GLY A 107 GLY A 118 1 ? 12 HELX_P HELX_P5 5 ASP A 126 ? ARG A 134 ? ASP A 131 ARG A 139 1 ? 9 HELX_P HELX_P6 6 TRP A 139 ? GLU A 144 ? TRP A 144 GLU A 149 5 ? 6 HELX_P HELX_P7 7 GLN A 156 ? LEU A 174 ? GLN A 161 LEU A 179 1 ? 19 HELX_P HELX_P8 8 ASP A 182 ? ASN A 196 ? ASP A 187 ASN A 201 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 13 C ? ? ? 1_555 A MSE 14 N ? ? A LEU 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 14 C ? ? ? 1_555 A GLN 15 N ? ? A MSE 19 A GLN 20 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A LEU 16 C ? ? ? 1_555 A MSE 17 N ? ? A LEU 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 17 C ? ? ? 1_555 A ASN 18 N ? ? A MSE 22 A ASN 23 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A LEU 22 C ? ? ? 1_555 A MSE 23 N ? ? A LEU 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 23 C ? ? ? 1_555 A SER 24 N ? ? A MSE 28 A SER 29 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A ASP 50 C ? ? ? 1_555 A MSE 51 N ? ? A ASP 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 51 C ? ? ? 1_555 A TYR 52 N ? ? A MSE 56 A TYR 57 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? A ILE 116 C ? ? ? 1_555 A MSE 117 N ? ? A ILE 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.321 ? covale10 covale ? ? A MSE 117 C ? ? ? 1_555 A VAL 118 N ? ? A MSE 122 A VAL 123 1_555 ? ? ? ? ? ? ? 1.324 ? covale11 covale ? ? A SER 123 C ? ? ? 1_555 A MSE 124 N ? ? A SER 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.321 ? covale12 covale ? ? A MSE 124 C ? ? ? 1_555 A ARG 125 N ? ? A MSE 129 A ARG 130 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? A LYS 186 C ? ? ? 1_555 A MSE 187 N ? ? A LYS 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? A MSE 187 C ? ? ? 1_555 A GLN 188 N ? ? A MSE 192 A GLN 193 1_555 ? ? ? ? ? ? ? 1.324 ? covale15 covale ? ? A LEU 189 C ? ? ? 1_555 A MSE 190 N ? ? A LEU 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.322 ? covale16 covale ? ? A MSE 190 C ? ? ? 1_555 A GLU 191 N ? ? A MSE 195 A GLU 196 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 74 ? GLN A 78 ? ILE A 79 GLN A 83 A 2 HIS A 147 ? ALA A 155 ? HIS A 152 ALA A 160 A 3 LEU A 81 ? TYR A 82 ? LEU A 86 TYR A 87 B 1 ILE A 74 ? GLN A 78 ? ILE A 79 GLN A 83 B 2 HIS A 147 ? ALA A 155 ? HIS A 152 ALA A 160 B 3 LYS A 115 ? ARG A 119 ? LYS A 120 ARG A 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 75 ? N VAL A 80 O ASP A 154 ? O ASP A 159 A 2 3 O VAL A 148 ? O VAL A 153 N LEU A 81 ? N LEU A 86 B 1 2 N VAL A 75 ? N VAL A 80 O ASP A 154 ? O ASP A 159 B 2 3 O THR A 151 ? O THR A 156 N LYS A 115 ? N LYS A 120 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU A 66 ? GLU A 71 . ? 1_555 ? 2 AC1 2 ARG A 158 ? ARG A 163 . ? 1_555 ? 3 AC2 3 ILE A 74 ? ILE A 79 . ? 1_555 ? 4 AC2 3 TYR A 82 ? TYR A 87 . ? 10_665 ? 5 AC2 3 ASP A 145 ? ASP A 150 . ? 10_665 ? # _atom_sites.entry_id 4JVH _atom_sites.fract_transf_matrix[1][1] 0.010138 _atom_sites.fract_transf_matrix[1][2] 0.005853 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009696 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 6 ? ? ? A . n A 1 2 THR 2 7 ? ? ? A . n A 1 3 LYS 3 8 ? ? ? A . n A 1 4 GLU 4 9 ? ? ? A . n A 1 5 LYS 5 10 ? ? ? A . n A 1 6 PRO 6 11 ? ? ? A . n A 1 7 LYS 7 12 12 LYS LYS A . n A 1 8 PRO 8 13 13 PRO PRO A . n A 1 9 THR 9 14 14 THR THR A . n A 1 10 PRO 10 15 15 PRO PRO A . n A 1 11 ASP 11 16 16 ASP ASP A . n A 1 12 TYR 12 17 17 TYR TYR A . n A 1 13 LEU 13 18 18 LEU LEU A . n A 1 14 MSE 14 19 19 MSE MSE A . n A 1 15 GLN 15 20 20 GLN GLN A . n A 1 16 LEU 16 21 21 LEU LEU A . n A 1 17 MSE 17 22 22 MSE MSE A . n A 1 18 ASN 18 23 23 ASN ASN A . n A 1 19 ASP 19 24 24 ASP ASP A . n A 1 20 LYS 20 25 25 LYS LYS A . n A 1 21 LYS 21 26 26 LYS LYS A . n A 1 22 LEU 22 27 27 LEU LEU A . n A 1 23 MSE 23 28 28 MSE MSE A . n A 1 24 SER 24 29 29 SER SER A . n A 1 25 SER 25 30 ? ? ? A . n A 1 26 LEU 26 31 ? ? ? A . n A 1 27 PRO 27 32 ? ? ? A . n A 1 28 ASN 28 33 ? ? ? A . n A 1 29 PHE 29 34 ? ? ? A . n A 1 30 CYS 30 35 ? ? ? A . n A 1 31 GLY 31 36 ? ? ? A . n A 1 32 ILE 32 37 ? ? ? A . n A 1 33 PHE 33 38 ? ? ? A . n A 1 34 ASN 34 39 39 ASN ASN A . n A 1 35 HIS 35 40 40 HIS HIS A . n A 1 36 LEU 36 41 41 LEU LEU A . n A 1 37 GLU 37 42 42 GLU GLU A . n A 1 38 ARG 38 43 43 ARG ARG A . n A 1 39 LEU 39 44 44 LEU LEU A . n A 1 40 LEU 40 45 45 LEU LEU A . n A 1 41 ASP 41 46 46 ASP ASP A . n A 1 42 GLU 42 47 47 GLU GLU A . n A 1 43 GLU 43 48 48 GLU GLU A . n A 1 44 ILE 44 49 49 ILE ILE A . n A 1 45 SER 45 50 50 SER SER A . n A 1 46 ARG 46 51 51 ARG ARG A . n A 1 47 VAL 47 52 52 VAL VAL A . n A 1 48 ARG 48 53 53 ARG ARG A . n A 1 49 LYS 49 54 54 LYS LYS A . n A 1 50 ASP 50 55 55 ASP ASP A . n A 1 51 MSE 51 56 56 MSE MSE A . n A 1 52 TYR 52 57 57 TYR TYR A . n A 1 53 ASN 53 58 58 ASN ASN A . n A 1 54 ASP 54 59 59 ASP ASP A . n A 1 55 THR 55 60 60 THR THR A . n A 1 56 LEU 56 61 ? ? ? A . n A 1 57 ASN 57 62 ? ? ? A . n A 1 58 GLY 58 63 ? ? ? A . n A 1 59 SER 59 64 ? ? ? A . n A 1 60 THR 60 65 ? ? ? A . n A 1 61 GLU 61 66 ? ? ? A . n A 1 62 LYS 62 67 ? ? ? A . n A 1 63 ARG 63 68 ? ? ? A . n A 1 64 SER 64 69 69 SER SER A . n A 1 65 ALA 65 70 70 ALA ALA A . n A 1 66 GLU 66 71 71 GLU GLU A . n A 1 67 LEU 67 72 72 LEU LEU A . n A 1 68 PRO 68 73 73 PRO PRO A . n A 1 69 ASP 69 74 74 ASP ASP A . n A 1 70 ALA 70 75 75 ALA ALA A . n A 1 71 VAL 71 76 76 VAL VAL A . n A 1 72 GLY 72 77 77 GLY GLY A . n A 1 73 PRO 73 78 78 PRO PRO A . n A 1 74 ILE 74 79 79 ILE ILE A . n A 1 75 VAL 75 80 80 VAL VAL A . n A 1 76 GLN 76 81 81 GLN GLN A . n A 1 77 LEU 77 82 82 LEU LEU A . n A 1 78 GLN 78 83 83 GLN GLN A . n A 1 79 GLU 79 84 84 GLU GLU A . n A 1 80 LYS 80 85 85 LYS LYS A . n A 1 81 LEU 81 86 86 LEU LEU A . n A 1 82 TYR 82 87 87 TYR TYR A . n A 1 83 VAL 83 88 88 VAL VAL A . n A 1 84 PRO 84 89 89 PRO PRO A . n A 1 85 VAL 85 90 90 VAL VAL A . n A 1 86 LYS 86 91 91 LYS LYS A . n A 1 87 GLU 87 92 92 GLU GLU A . n A 1 88 TYR 88 93 93 TYR TYR A . n A 1 89 PRO 89 94 94 PRO PRO A . n A 1 90 ASP 90 95 95 ASP ASP A . n A 1 91 PHE 91 96 96 PHE PHE A . n A 1 92 ASN 92 97 97 ASN ASN A . n A 1 93 PHE 93 98 98 PHE PHE A . n A 1 94 VAL 94 99 99 VAL VAL A . n A 1 95 GLY 95 100 100 GLY GLY A . n A 1 96 ARG 96 101 101 ARG ARG A . n A 1 97 ILE 97 102 102 ILE ILE A . n A 1 98 LEU 98 103 103 LEU LEU A . n A 1 99 GLY 99 104 104 GLY GLY A . n A 1 100 PRO 100 105 105 PRO PRO A . n A 1 101 ARG 101 106 106 ARG ARG A . n A 1 102 GLY 102 107 107 GLY GLY A . n A 1 103 LEU 103 108 108 LEU LEU A . n A 1 104 THR 104 109 109 THR THR A . n A 1 105 ALA 105 110 110 ALA ALA A . n A 1 106 LYS 106 111 111 LYS LYS A . n A 1 107 GLN 107 112 112 GLN GLN A . n A 1 108 LEU 108 113 113 LEU LEU A . n A 1 109 GLU 109 114 114 GLU GLU A . n A 1 110 ALA 110 115 115 ALA ALA A . n A 1 111 GLU 111 116 116 GLU GLU A . n A 1 112 THR 112 117 117 THR THR A . n A 1 113 GLY 113 118 118 GLY GLY A . n A 1 114 CYS 114 119 119 CYS CYS A . n A 1 115 LYS 115 120 120 LYS LYS A . n A 1 116 ILE 116 121 121 ILE ILE A . n A 1 117 MSE 117 122 122 MSE MSE A . n A 1 118 VAL 118 123 123 VAL VAL A . n A 1 119 ARG 119 124 124 ARG ARG A . n A 1 120 GLY 120 125 125 GLY GLY A . n A 1 121 LYS 121 126 126 LYS LYS A . n A 1 122 GLY 122 127 127 GLY GLY A . n A 1 123 SER 123 128 128 SER SER A . n A 1 124 MSE 124 129 129 MSE MSE A . n A 1 125 ARG 125 130 130 ARG ARG A . n A 1 126 ASP 126 131 131 ASP ASP A . n A 1 127 LYS 127 132 132 LYS LYS A . n A 1 128 LYS 128 133 133 LYS LYS A . n A 1 129 LYS 129 134 134 LYS LYS A . n A 1 130 GLU 130 135 135 GLU GLU A . n A 1 131 GLU 131 136 136 GLU GLU A . n A 1 132 GLN 132 137 137 GLN GLN A . n A 1 133 ASN 133 138 138 ASN ASN A . n A 1 134 ARG 134 139 139 ARG ARG A . n A 1 135 GLY 135 140 140 GLY GLY A . n A 1 136 LYS 136 141 141 LYS LYS A . n A 1 137 PRO 137 142 142 PRO PRO A . n A 1 138 ASN 138 143 143 ASN ASN A . n A 1 139 TRP 139 144 144 TRP TRP A . n A 1 140 GLU 140 145 145 GLU GLU A . n A 1 141 HIS 141 146 146 HIS HIS A . n A 1 142 LEU 142 147 147 LEU LEU A . n A 1 143 ASN 143 148 148 ASN ASN A . n A 1 144 GLU 144 149 149 GLU GLU A . n A 1 145 ASP 145 150 150 ASP ASP A . n A 1 146 LEU 146 151 151 LEU LEU A . n A 1 147 HIS 147 152 152 HIS HIS A . n A 1 148 VAL 148 153 153 VAL VAL A . n A 1 149 LEU 149 154 154 LEU LEU A . n A 1 150 ILE 150 155 155 ILE ILE A . n A 1 151 THR 151 156 156 THR THR A . n A 1 152 VAL 152 157 157 VAL VAL A . n A 1 153 GLU 153 158 158 GLU GLU A . n A 1 154 ASP 154 159 159 ASP ASP A . n A 1 155 ALA 155 160 160 ALA ALA A . n A 1 156 GLN 156 161 161 GLN GLN A . n A 1 157 ASN 157 162 162 ASN ASN A . n A 1 158 ARG 158 163 163 ARG ARG A . n A 1 159 ALA 159 164 164 ALA ALA A . n A 1 160 GLU 160 165 165 GLU GLU A . n A 1 161 ILE 161 166 166 ILE ILE A . n A 1 162 LYS 162 167 167 LYS LYS A . n A 1 163 LEU 163 168 168 LEU LEU A . n A 1 164 LYS 164 169 169 LYS LYS A . n A 1 165 ARG 165 170 170 ARG ARG A . n A 1 166 ALA 166 171 171 ALA ALA A . n A 1 167 VAL 167 172 172 VAL VAL A . n A 1 168 GLU 168 173 173 GLU GLU A . n A 1 169 GLU 169 174 174 GLU GLU A . n A 1 170 VAL 170 175 175 VAL VAL A . n A 1 171 LYS 171 176 176 LYS LYS A . n A 1 172 LYS 172 177 177 LYS LYS A . n A 1 173 LEU 173 178 178 LEU LEU A . n A 1 174 LEU 174 179 179 LEU LEU A . n A 1 175 VAL 175 180 180 VAL VAL A . n A 1 176 PRO 176 181 181 PRO PRO A . n A 1 177 ALA 177 182 182 ALA ALA A . n A 1 178 ALA 178 183 183 ALA ALA A . n A 1 179 GLU 179 184 184 GLU GLU A . n A 1 180 GLY 180 185 185 GLY GLY A . n A 1 181 GLU 181 186 186 GLU GLU A . n A 1 182 ASP 182 187 187 ASP ASP A . n A 1 183 SER 183 188 188 SER SER A . n A 1 184 LEU 184 189 189 LEU LEU A . n A 1 185 LYS 185 190 190 LYS LYS A . n A 1 186 LYS 186 191 191 LYS LYS A . n A 1 187 MSE 187 192 192 MSE MSE A . n A 1 188 GLN 188 193 193 GLN GLN A . n A 1 189 LEU 189 194 194 LEU LEU A . n A 1 190 MSE 190 195 195 MSE MSE A . n A 1 191 GLU 191 196 196 GLU GLU A . n A 1 192 LEU 192 197 197 LEU LEU A . n A 1 193 ALA 193 198 198 ALA ALA A . n A 1 194 ILE 194 199 199 ILE ILE A . n A 1 195 LEU 195 200 200 LEU LEU A . n A 1 196 ASN 196 201 201 ASN ASN A . n A 1 197 GLY 197 202 202 GLY GLY A . n A 1 198 THR 198 203 203 THR THR A . n A 1 199 TYR 199 204 204 TYR TYR A . n A 1 200 ARG 200 205 ? ? ? A . n A 1 201 ASP 201 206 ? ? ? A . n A 1 202 ALA 202 207 ? ? ? A . n A 1 203 ASN 203 208 ? ? ? A . n A 1 204 ILE 204 209 ? ? ? A . n A 1 205 LYS 205 210 ? ? ? A . n A 1 206 SER 206 211 ? ? ? A . n A 1 207 PRO 207 212 ? ? ? A . n A 1 208 ALA 208 213 ? ? ? A . n A 1 209 LEU 209 214 ? ? ? A . n B 2 1 U 1 1 ? ? ? D . n B 2 2 U 2 2 ? ? ? D . n B 2 3 C 3 3 ? ? ? D . n B 2 4 A 4 4 4 A A D . n B 2 5 C 5 5 5 C C D . n B 2 6 U 6 6 6 U U D . n B 2 7 A 7 7 7 A A D . n B 2 8 A 8 8 8 A A D . n B 2 9 C 9 9 9 C C D . n B 2 10 A 10 10 10 A A D . n B 2 11 A 11 11 11 A A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 301 1 SO4 SO4 A . D 3 SO4 1 302 2 SO4 SO4 A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 19 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 22 ? MET SELENOMETHIONINE 3 A MSE 23 A MSE 28 ? MET SELENOMETHIONINE 4 A MSE 51 A MSE 56 ? MET SELENOMETHIONINE 5 A MSE 117 A MSE 122 ? MET SELENOMETHIONINE 6 A MSE 124 A MSE 129 ? MET SELENOMETHIONINE 7 A MSE 187 A MSE 192 ? MET SELENOMETHIONINE 8 A MSE 190 A MSE 195 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1,3 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 6010 ? 2 MORE -51 ? 2 'SSA (A^2)' 22310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 147.9510000000 -0.8660254038 0.5000000000 0.0000000000 85.4195496769 0.0000000000 0.0000000000 -1.0000000000 68.7580000000 3 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5000000000 -0.8660254038 0.0000000000 49.3170000000 -0.8660254038 -0.5000000000 0.0000000000 85.4195496769 0.0000000000 0.0000000000 -1.0000000000 85.9475000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 48.4469 49.2979 48.8075 -0.3194 -0.1190 -2.5454 -0.2011 -0.3356 -1.0855 0.3052 0.4222 0.1428 0.1019 -0.1447 -0.1421 -1.2894 0.1350 -0.2562 0.5004 2.3185 -0.7565 0.9804 -0.2963 0.6671 'X-RAY DIFFRACTION' 2 ? refined 42.2054 55.3863 51.9189 0.6576 0.4027 1.1032 0.0002 -0.2455 -0.2998 0.0184 -0.0011 0.0100 -0.0135 -0.0223 0.0160 0.2337 0.5887 -0.0000 -0.1005 0.6125 0.0087 -0.0088 -0.0783 -0.1263 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 12 through 203 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 D 0 D 0 ;chain 'D' and (resid 4 through 11 ) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX AutoSol ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLY 125 ? ? OG A SER 128 ? ? 2.08 2 1 NH2 A ARG 124 ? ? O2 D C 9 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 136 ? ? -67.31 8.15 2 1 LYS A 169 ? ? -50.75 -7.96 3 1 GLU A 173 ? ? -79.51 23.35 4 1 LEU A 179 ? ? -97.93 33.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 6 ? A SER 1 2 1 Y 1 A THR 7 ? A THR 2 3 1 Y 1 A LYS 8 ? A LYS 3 4 1 Y 1 A GLU 9 ? A GLU 4 5 1 Y 1 A LYS 10 ? A LYS 5 6 1 Y 1 A PRO 11 ? A PRO 6 7 1 Y 1 A SER 30 ? A SER 25 8 1 Y 1 A LEU 31 ? A LEU 26 9 1 Y 1 A PRO 32 ? A PRO 27 10 1 Y 1 A ASN 33 ? A ASN 28 11 1 Y 1 A PHE 34 ? A PHE 29 12 1 Y 1 A CYS 35 ? A CYS 30 13 1 Y 1 A GLY 36 ? A GLY 31 14 1 Y 1 A ILE 37 ? A ILE 32 15 1 Y 1 A PHE 38 ? A PHE 33 16 1 Y 1 A LEU 61 ? A LEU 56 17 1 Y 1 A ASN 62 ? A ASN 57 18 1 Y 1 A GLY 63 ? A GLY 58 19 1 Y 1 A SER 64 ? A SER 59 20 1 Y 1 A THR 65 ? A THR 60 21 1 Y 1 A GLU 66 ? A GLU 61 22 1 Y 1 A LYS 67 ? A LYS 62 23 1 Y 1 A ARG 68 ? A ARG 63 24 1 Y 1 A ARG 205 ? A ARG 200 25 1 Y 1 A ASP 206 ? A ASP 201 26 1 Y 1 A ALA 207 ? A ALA 202 27 1 Y 1 A ASN 208 ? A ASN 203 28 1 Y 1 A ILE 209 ? A ILE 204 29 1 Y 1 A LYS 210 ? A LYS 205 30 1 Y 1 A SER 211 ? A SER 206 31 1 Y 1 A PRO 212 ? A PRO 207 32 1 Y 1 A ALA 213 ? A ALA 208 33 1 Y 1 A LEU 214 ? A LEU 209 34 1 Y 1 D U 1 ? B U 1 35 1 Y 1 D U 2 ? B U 2 36 1 Y 1 D C 3 ? B C 3 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SULFATE ION' _pdbx_entity_nonpoly.comp_id SO4 #