HEADER LYASE 26-MAR-13 4JVT TITLE CRYSTAL STRUCTURE OF TFU_1878, A PUTATIVE ENOYL-COA HYDRATASE TITLE 2 FROMTHERMOBIFIDA FUSCA YX IN COMPLEX WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: TFU_1878; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PUTATIVE ENOYL-COA HYDRATASE/ISOMERASE, KEYWDS 3 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MIKOLAJCZAK,P.J.POREBSKI,D.R.COOPER,M.AHMED,M.STEAD,B.HILLERICH, AUTHOR 2 R.SEIDEL,M.ZIMMERMAN,J.B.BONANNO,S.C.ALMO,W.MINOR,NEW YORK AUTHOR 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 16-OCT-24 4JVT 1 REMARK REVDAT 3 13-APR-22 4JVT 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 15-NOV-17 4JVT 1 REMARK REVDAT 1 19-JUN-13 4JVT 0 JRNL AUTH K.MIKOLAJCZAK,P.J.POREBSKI,D.R.COOPER,M.AHMED,M.STEAD, JRNL AUTH 2 B.HILLERICH,R.SEIDEL,M.ZIMMERMAN,J.B.BONANNO,S.C.ALMO, JRNL AUTH 3 W.MINOR JRNL TITL CRYSTAL STRUCTURE OF TFU_1878, A PUTATIVE ENOYL-COA JRNL TITL 2 HYDRATASE FROMTHERMOBIFIDA FUSCA YX IN COMPLEX WITH COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2451 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2995 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2072 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2063 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2854 ; 2.099 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4718 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.827 ;22.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;11.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2376 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3570 1.6270 50.0040 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0542 REMARK 3 T33: 0.0483 T12: -0.0005 REMARK 3 T13: -0.0038 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 4.0525 L22: 1.2803 REMARK 3 L33: 6.2937 L12: 0.4006 REMARK 3 L13: -2.8440 L23: -1.8001 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.1584 S13: -0.0678 REMARK 3 S21: 0.0549 S22: -0.1858 S23: -0.1519 REMARK 3 S31: 0.0352 S32: 0.4050 S33: 0.2063 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2250 6.6870 46.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.1088 REMARK 3 T33: 0.0785 T12: -0.0137 REMARK 3 T13: 0.0459 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 4.3263 L22: 6.6768 REMARK 3 L33: 5.2537 L12: 1.0784 REMARK 3 L13: 2.2167 L23: 0.3793 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.5754 S13: -0.1094 REMARK 3 S21: 0.3502 S22: -0.1189 S23: 0.3996 REMARK 3 S31: -0.0592 S32: -0.2639 S33: 0.0476 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9860 7.5810 47.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0657 REMARK 3 T33: 0.0390 T12: -0.0142 REMARK 3 T13: -0.0172 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.0707 L22: 1.0852 REMARK 3 L33: 4.1196 L12: -0.6024 REMARK 3 L13: -1.3761 L23: 0.5734 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: -0.2475 S13: -0.0256 REMARK 3 S21: 0.1328 S22: -0.0185 S23: -0.1047 REMARK 3 S31: -0.0453 S32: 0.3528 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5130 13.1210 48.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1745 REMARK 3 T33: 0.1035 T12: 0.0387 REMARK 3 T13: 0.0741 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.9342 L22: 5.3176 REMARK 3 L33: 7.8058 L12: -0.5132 REMARK 3 L13: 0.3785 L23: 1.9815 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.5671 S13: 0.1904 REMARK 3 S21: 0.5833 S22: 0.1432 S23: 0.4581 REMARK 3 S31: -0.4927 S32: -0.5689 S33: -0.0761 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1240 18.0760 58.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.9200 REMARK 3 T33: 0.4519 T12: 0.0096 REMARK 3 T13: 0.0383 T23: -0.1855 REMARK 3 L TENSOR REMARK 3 L11: 9.7803 L22: 44.3403 REMARK 3 L33: 3.8491 L12: -19.3472 REMARK 3 L13: -3.2364 L23: 2.3682 REMARK 3 S TENSOR REMARK 3 S11: -0.3884 S12: -0.9477 S13: 0.5234 REMARK 3 S21: 1.4064 S22: 1.0876 S23: -0.2769 REMARK 3 S31: -0.3279 S32: 0.5781 S33: -0.6991 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5690 17.9740 37.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.0156 REMARK 3 T33: 0.0144 T12: -0.0114 REMARK 3 T13: 0.0104 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.7352 L22: 1.4694 REMARK 3 L33: 1.1114 L12: -0.2937 REMARK 3 L13: -0.0618 L23: -0.5506 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0705 S13: 0.0415 REMARK 3 S21: 0.1667 S22: -0.0097 S23: 0.0676 REMARK 3 S31: -0.0508 S32: -0.0281 S33: 0.0050 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1240 7.0060 29.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0339 REMARK 3 T33: 0.0206 T12: 0.0103 REMARK 3 T13: 0.0098 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.9640 L22: 0.9583 REMARK 3 L33: 1.0209 L12: 0.0263 REMARK 3 L13: -0.2237 L23: -0.3823 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0529 S13: -0.1753 REMARK 3 S21: -0.0117 S22: -0.0308 S23: 0.0012 REMARK 3 S31: 0.1282 S32: 0.0922 S33: 0.0259 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3270 17.4110 30.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.2328 REMARK 3 T33: 0.0493 T12: -0.0349 REMARK 3 T13: -0.0275 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 8.2725 L22: 9.0914 REMARK 3 L33: 3.7169 L12: -1.8821 REMARK 3 L13: 0.0517 L23: -2.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.1160 S12: -0.5689 S13: -0.2393 REMARK 3 S21: 0.2214 S22: -0.1500 S23: -0.4343 REMARK 3 S31: -0.0442 S32: 0.5152 S33: 0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BE LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.44400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.44400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.44400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.44400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.44400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.44400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.44400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.44400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.44400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.44400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.44400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.44400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.44400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.44400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.44400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.44400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.44400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.44400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 91 REMARK 465 THR A 92 REMARK 465 LEU A 93 REMARK 465 LEU A 94 REMARK 465 ALA A 95 REMARK 465 ARG A 96 REMARK 465 ASP A 97 REMARK 465 PRO A 98 REMARK 465 ASN A 99 REMARK 465 SER A 269 REMARK 465 ALA A 270 REMARK 465 ALA A 271 REMARK 465 PRO A 272 REMARK 465 ARG A 273 REMARK 465 ARG A 274 REMARK 465 PRO A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 THR A 4 OG1 CG2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLN A 106 CD OE1 NE2 REMARK 470 LYS A 267 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 169 10.45 82.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACO A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-028034 RELATED DB: TARGETTRACK DBREF 4JVT A 1 275 UNP Q47NQ8 Q47NQ8_THEFY 1 275 SEQADV 4JVT MSE A -21 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -20 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -19 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -18 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -17 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -16 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT HIS A -15 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT SER A -14 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT SER A -13 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT GLY A -12 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT VAL A -11 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT ASP A -10 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT LEU A -9 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT GLY A -8 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT THR A -7 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT GLU A -6 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT ASN A -5 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT LEU A -4 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT TYR A -3 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT PHE A -2 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT GLN A -1 UNP Q47NQ8 EXPRESSION TAG SEQADV 4JVT SER A 0 UNP Q47NQ8 EXPRESSION TAG SEQRES 1 A 297 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 297 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA GLN THR SEQRES 3 A 297 LYS ALA PRO THR ALA GLU GLU LEU ALA ALA ALA GLY LEU SEQRES 4 A 297 THR LEU THR ILE ASP GLY GLU VAL ALA ARG ILE THR LEU SEQRES 5 A 297 SER ARG PRO HIS ARG ARG ASN ALA MSE THR GLY ARG MSE SEQRES 6 A 297 TRP THR GLU LEU ALA ARG ILE GLY HIS THR LEU PRO GLN SEQRES 7 A 297 ALA VAL ARG ILE VAL VAL ILE THR GLY GLU GLY PRO THR SEQRES 8 A 297 PHE SER SER GLY ILE ASP LEU ASP MSE PHE GLN ALA GLY SEQRES 9 A 297 LYS VAL ASP GLY GLU PRO THR PRO PHE THR LEU LEU ALA SEQRES 10 A 297 ARG ASP PRO ASN SER THR ALA ALA LEU ASP GLN VAL ILE SEQRES 11 A 297 ALA SER TYR GLN GLU GLY PHE LEU TRP LEU ARG ARG ALA SEQRES 12 A 297 ASP ILE VAL SER ILE ALA ALA VAL ARG GLY HIS ALA ILE SEQRES 13 A 297 GLY ALA GLY PHE GLN LEU ALA LEU SER CYS ASP ILE ARG SEQRES 14 A 297 ILE LEU SER ASP THR ALA GLN LEU CYS MSE LYS GLU PRO SEQRES 15 A 297 ALA LEU GLY LEU VAL PRO ASP LEU THR GLY THR GLN PRO SEQRES 16 A 297 LEU VAL GLU LEU VAL GLY VAL ASN ARG ALA ILE GLU LEU SEQRES 17 A 297 CYS LEU THR ALA ARG THR ILE ASP ALA ALA GLU ALA ALA SEQRES 18 A 297 GLN LEU ARG LEU ALA GLU ARG VAL VAL ALA ASP ALA GLU SEQRES 19 A 297 LEU ASP ALA ALA VAL ASP ALA LEU VAL ALA GLN LEU LEU SEQRES 20 A 297 ALA VAL PRO ALA ALA ALA ALA ARG ALA THR LYS GLU LEU SEQRES 21 A 297 LEU LEU GLN ALA GLY ARG ASN ASP LEU ALA THR GLN ALA SEQRES 22 A 297 ARG VAL GLU ARG THR ALA GLN LEU ALA ARG LEU ALA GLU SEQRES 23 A 297 LEU ALA LYS ALA SER ALA ALA PRO ARG ARG PRO MODRES 4JVT MSE A 39 MET SELENOMETHIONINE MODRES 4JVT MSE A 43 MET SELENOMETHIONINE MODRES 4JVT MSE A 78 MET SELENOMETHIONINE MODRES 4JVT MSE A 157 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 43 8 HET MSE A 78 8 HET MSE A 157 8 HET ACO A 301 48 HET ACT A 302 4 HETNAM MSE SELENOMETHIONINE HETNAM ACO ACETYL COENZYME *A HETNAM ACT ACETATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ACO C23 H38 N7 O17 P3 S FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *329(H2 O) HELIX 1 1 THR A 8 ALA A 15 1 8 HELIX 2 2 ARG A 32 ARG A 36 5 5 HELIX 3 3 THR A 40 LEU A 54 1 15 HELIX 4 4 ASP A 75 GLN A 80 5 6 HELIX 5 5 THR A 101 TRP A 117 1 17 HELIX 6 6 LEU A 118 ARG A 120 5 3 HELIX 7 7 GLY A 135 CYS A 144 1 10 HELIX 8 8 LYS A 158 GLY A 163 5 6 HELIX 9 9 GLY A 170 GLY A 179 1 10 HELIX 10 10 GLY A 179 ALA A 190 1 12 HELIX 11 11 ALA A 195 LEU A 201 1 7 HELIX 12 12 ALA A 209 ALA A 211 5 3 HELIX 13 13 GLU A 212 ALA A 226 1 15 HELIX 14 14 PRO A 228 GLY A 243 1 16 HELIX 15 15 ASP A 246 ALA A 268 1 23 SHEET 1 A 6 LEU A 17 ASP A 22 0 SHEET 2 A 6 VAL A 25 LEU A 30 -1 O ARG A 27 N THR A 20 SHEET 3 A 6 ILE A 60 GLY A 65 1 O ILE A 60 N ALA A 26 SHEET 4 A 6 VAL A 124 VAL A 129 1 O ILE A 126 N ILE A 63 SHEET 5 A 6 ILE A 146 SER A 150 1 O SER A 150 N VAL A 129 SHEET 6 A 6 ARG A 206 VAL A 208 1 O ARG A 206 N LEU A 149 SHEET 1 B 3 HIS A 132 ILE A 134 0 SHEET 2 B 3 GLN A 154 CYS A 156 1 O GLN A 154 N ALA A 133 SHEET 3 B 3 THR A 192 ASP A 194 -1 O ILE A 193 N LEU A 155 LINK C ALA A 38 N MSE A 39 1555 1555 1.32 LINK C MSE A 39 N THR A 40 1555 1555 1.30 LINK C ARG A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N TRP A 44 1555 1555 1.33 LINK C ASP A 77 N MSE A 78 1555 1555 1.34 LINK C MSE A 78 N PHE A 79 1555 1555 1.33 LINK C CYS A 156 N MSE A 157 1555 1555 1.34 LINK C MSE A 157 N LYS A 158 1555 1555 1.30 SITE 1 AC1 25 GLU A 10 HIS A 34 ARG A 35 ARG A 36 SITE 2 AC1 25 ALA A 38 SER A 72 GLY A 73 ILE A 74 SITE 3 AC1 25 ASP A 75 LEU A 76 ILE A 134 GLY A 135 SITE 4 AC1 25 ALA A 136 HOH A 595 HOH A 636 HOH A 637 SITE 5 AC1 25 HOH A 645 HOH A 667 HOH A 679 HOH A 692 SITE 6 AC1 25 HOH A 693 HOH A 694 HOH A 695 HOH A 696 SITE 7 AC1 25 HOH A 716 SITE 1 AC2 1 ASP A 167 CRYST1 106.888 106.888 106.888 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009356 0.00000