HEADER CHAPERONE/ANTIBIOTIC 27-MAR-13 4JWI TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH SHEEP BAC7(35-43) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CATHELICIDIN-3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 165-173; COMPND 11 SYNONYM: BACTENECIN-7, BAC7, PR-59; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: OVIS ARIES; SOURCE 11 ORGANISM_COMMON: SHEEP; SOURCE 12 ORGANISM_TAXID: 9940 KEYWDS CHAPERONE, PEPTIDE BINDING, ANTIMICROBIAL PEPTIDE, CHAPERONE- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 4 20-SEP-23 4JWI 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4JWI 1 REMARK REVDAT 2 26-MAR-14 4JWI 1 JRNL REVDAT 1 13-NOV-13 4JWI 0 JRNL AUTH M.ZAHN,B.KIESLICH,N.BERTHOLD,D.KNAPPE,R.HOFFMANN,N.STRATER JRNL TITL STRUCTURAL IDENTIFICATION OF DNAK BINDING SITES WITHIN JRNL TITL 2 BOVINE AND SHEEP BACTENECIN BAC7. JRNL REF PROTEIN PEPT.LETT. V. 21 407 2014 JRNL REFN ISSN 0929-8665 JRNL PMID 24164259 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3318 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3562 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3206 REMARK 3 BIN R VALUE (WORKING SET) : 0.3544 REMARK 3 BIN FREE R VALUE : 0.4077 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.38 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.53940 REMARK 3 B22 (A**2) : -5.08640 REMARK 3 B33 (A**2) : -0.45300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.259 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3486 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4710 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1292 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 117 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 487 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3486 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 485 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4197 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|389 - A|542 } REMARK 3 ORIGIN FOR THE GROUP (A): -32.1692 33.1434 -21.0682 REMARK 3 T TENSOR REMARK 3 T11: -0.0757 T22: -0.0804 REMARK 3 T33: 0.0384 T12: -0.0068 REMARK 3 T13: 0.0045 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.4103 L22: 0.6775 REMARK 3 L33: 0.4189 L12: -0.1310 REMARK 3 L13: 0.0691 L23: -0.1244 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0119 S13: 0.0460 REMARK 3 S21: -0.0223 S22: 0.0384 S23: 0.0320 REMARK 3 S31: 0.0030 S32: -0.0424 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|543 - A|557 } REMARK 3 ORIGIN FOR THE GROUP (A): -59.0627 26.9505 -1.0169 REMARK 3 T TENSOR REMARK 3 T11: -0.1887 T22: 0.0230 REMARK 3 T33: 0.2959 T12: 0.1519 REMARK 3 T13: 0.1426 T23: 0.1127 REMARK 3 L TENSOR REMARK 3 L11: 0.0073 L22: 4.0925 REMARK 3 L33: 2.0485 L12: -0.3176 REMARK 3 L13: 0.2156 L23: 0.7424 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1225 S13: 0.0858 REMARK 3 S21: 0.0472 S22: -0.0332 S23: -0.0226 REMARK 3 S31: -0.0837 S32: -0.0404 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|558 - A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): -53.2804 16.4164 -3.1242 REMARK 3 T TENSOR REMARK 3 T11: -0.1528 T22: -0.0371 REMARK 3 T33: 0.0611 T12: 0.0175 REMARK 3 T13: 0.0580 T23: 0.1417 REMARK 3 L TENSOR REMARK 3 L11: 5.8992 L22: 2.7886 REMARK 3 L33: 3.9078 L12: -0.5182 REMARK 3 L13: -2.2364 L23: -0.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0980 S12: -0.2843 S13: 0.0042 REMARK 3 S21: 0.2904 S22: 0.3115 S23: 0.5226 REMARK 3 S31: -0.1873 S32: -0.5442 S33: -0.2135 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|389 - B|507 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.1843 18.9152 -5.9587 REMARK 3 T TENSOR REMARK 3 T11: -0.0608 T22: -0.0703 REMARK 3 T33: 0.0619 T12: -0.0123 REMARK 3 T13: -0.0103 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.7990 L22: 1.2514 REMARK 3 L33: 0.7120 L12: -0.3458 REMARK 3 L13: -0.2944 L23: 0.5075 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.0543 S13: -0.0407 REMARK 3 S21: -0.0360 S22: 0.0040 S23: -0.1807 REMARK 3 S31: -0.0263 S32: 0.1077 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|508 - B|531 } REMARK 3 ORIGIN FOR THE GROUP (A): -29.8471 18.9586 -0.2242 REMARK 3 T TENSOR REMARK 3 T11: -0.0641 T22: -0.0434 REMARK 3 T33: 0.0406 T12: 0.0259 REMARK 3 T13: 0.0018 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.4327 L22: 2.7110 REMARK 3 L33: 1.3127 L12: 1.9113 REMARK 3 L13: -0.1925 L23: 0.5460 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.4721 S13: -0.0085 REMARK 3 S21: 0.2915 S22: -0.1177 S23: 0.1737 REMARK 3 S31: -0.1055 S32: -0.2767 S33: 0.1093 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|532 - B|604 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.0612 -8.1477 -19.1229 REMARK 3 T TENSOR REMARK 3 T11: -0.1400 T22: -0.0666 REMARK 3 T33: -0.0108 T12: -0.1008 REMARK 3 T13: -0.0355 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 4.4146 L22: 5.1338 REMARK 3 L33: 6.7335 L12: -1.5386 REMARK 3 L13: -2.5650 L23: 2.7661 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.5442 S13: 0.0011 REMARK 3 S21: -0.3019 S22: 0.0596 S23: -0.0085 REMARK 3 S31: 0.0981 S32: -0.0270 S33: -0.0622 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 23.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3DPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID, PH 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.95700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.57950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.95700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.57950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 45.11400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SD MET B 469 LIES ON A SPECIAL POSITION. REMARK 375 CE MET B 469 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 PRO C 35 REMARK 465 PRO D 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 404 123.41 -39.54 REMARK 500 ASP B 460 -167.69 -107.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 C 44 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 D 44 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF CATHELICIDIN-3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF CATHELICIDIN-3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB REMARK 900 RELATED ID: 3QNJ RELATED DB: PDB REMARK 900 RELATED ID: 4E81 RELATED DB: PDB REMARK 900 RELATED ID: 4JWC RELATED DB: PDB REMARK 900 RELATED ID: 4JWD RELATED DB: PDB REMARK 900 RELATED ID: 4JWE RELATED DB: PDB DBREF 4JWI A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4JWI B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4JWI C 35 43 UNP P50415 CTHL3_SHEEP 165 173 DBREF 4JWI D 35 43 UNP P50415 CTHL3_SHEEP 165 173 SEQADV 4JWI NH2 C 44 UNP P50415 AMIDATION SEQADV 4JWI NH2 D 44 UNP P50415 AMIDATION SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 10 PRO ARG PRO ILE LEU LEU PRO TRP ARG NH2 SEQRES 1 D 10 PRO ARG PRO ILE LEU LEU PRO TRP ARG NH2 HET NH2 C 44 1 HET NH2 D 44 1 HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION FORMUL 3 NH2 2(H2 N) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *384(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLY A 554 1 33 HELIX 4 4 ASP A 555 LEU A 557 5 3 HELIX 5 5 PRO A 558 LYS A 577 1 20 HELIX 6 6 ASP A 580 SER A 595 1 16 HELIX 7 7 SER A 595 ILE A 601 1 7 HELIX 8 8 ARG B 447 ASN B 451 5 5 HELIX 9 9 ASN B 508 ASN B 522 1 15 HELIX 10 10 ASN B 522 GLY B 554 1 33 HELIX 11 11 ASP B 555 LEU B 557 5 3 HELIX 12 12 PRO B 558 LEU B 576 1 19 HELIX 13 13 ASP B 580 SER B 595 1 16 HELIX 14 14 SER B 595 GLN B 603 1 9 SHEET 1 A 4 VAL A 407 ILE A 412 0 SHEET 2 A 4 LEU A 399 THR A 403 -1 N ILE A 401 O THR A 409 SHEET 3 A 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 A 4 LYS A 452 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 1 B 5 GLU A 496 ILE A 501 0 SHEET 2 B 5 LEU A 484 ASP A 490 -1 N LEU A 484 O ILE A 501 SHEET 3 B 5 ILE A 472 ILE A 478 -1 N ASP A 477 O HIS A 485 SHEET 4 B 5 THR A 420 THR A 428 -1 N HIS A 422 O PHE A 476 SHEET 5 B 5 ILE C 38 LEU C 40 1 O LEU C 40 N SER A 427 SHEET 1 C 4 VAL B 407 ILE B 412 0 SHEET 2 C 4 LEU B 399 THR B 403 -1 N LEU B 399 O LEU B 411 SHEET 3 C 4 VAL B 436 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 C 4 LYS B 452 LEU B 459 -1 O PHE B 457 N ILE B 438 SHEET 1 D 5 GLU B 496 ILE B 501 0 SHEET 2 D 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 D 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 D 5 THR B 420 THR B 428 -1 N PHE B 426 O ILE B 472 SHEET 5 D 5 ILE D 38 LEU D 40 1 O LEU D 40 N SER B 427 LINK C ARG C 43 N NH2 C 44 1555 1555 1.35 LINK C ARG D 43 N NH2 D 44 1555 1555 1.34 CISPEP 1 ILE A 418 PRO A 419 0 2.95 CISPEP 2 ILE B 418 PRO B 419 0 -0.50 SITE 1 AC1 2 TRP C 42 ARG C 43 SITE 1 AC2 2 ARG A 517 ARG D 43 SITE 1 AC3 4 ARG A 467 GLN A 538 HIS A 541 HOH A 949 SITE 1 AC4 6 MET A 404 GLY A 405 GLY A 406 HOH A 841 SITE 2 AC4 6 HOH A 997 ARG C 43 SITE 1 AC5 4 LYS B 502 SER B 504 HOH B 838 HOH B 961 SITE 1 AC6 7 THR B 409 THR B 410 LYS B 446 HOH B 832 SITE 2 AC6 7 HOH B 877 HOH B 915 HOH B 916 SITE 1 AC7 6 ARG B 447 ARG B 536 LYS B 577 GLU B 579 SITE 2 AC7 6 HOH B 885 HOH B 970 SITE 1 AC8 19 ILE A 401 GLU A 402 THR A 403 MET A 404 SITE 2 AC8 19 GLN A 424 PHE A 426 SER A 427 THR A 428 SITE 3 AC8 19 ALA A 429 GLN A 433 ALA A 435 THR A 437 SITE 4 AC8 19 ASN A 458 HIS A 541 SO4 A 702 HOH A 855 SITE 5 AC8 19 NH2 C 44 HOH C 101 HOH C 103 SITE 1 AC9 22 ARG A 517 ILE B 401 THR B 403 MET B 404 SITE 2 AC9 22 THR B 409 PHE B 426 SER B 427 THR B 428 SITE 3 AC9 22 ALA B 429 GLN B 433 ALA B 435 VAL B 436 SITE 4 AC9 22 THR B 437 ILE B 438 ASN B 458 GLY B 468 SITE 5 AC9 22 HIS B 541 HOH B 899 NH2 D 44 HOH D 101 SITE 6 AC9 22 HOH D 102 HOH D 103 CRYST1 77.914 161.159 45.114 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022166 0.00000