HEADER TRANSFERASE 27-MAR-13 4JWJ TITLE CRYSTAL STRUCTURE OF SCTRM10(84)-SAH COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE(9)-N1)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 84-276; COMPND 5 SYNONYM: TRNA METHYLTRANSFERASE 10, TRNA(M1G9)-METHYLTRANSFERASE, COMPND 6 TRNA(M1G9)MTASE; COMPND 7 EC: 2.1.1.221; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: O0926, TRM10, YOL093W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRNA MTASE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YAN,Z.SHAO REVDAT 4 08-NOV-23 4JWJ 1 REMARK SEQADV REVDAT 3 15-NOV-17 4JWJ 1 REMARK REVDAT 2 12-FEB-14 4JWJ 1 JRNL REVDAT 1 16-OCT-13 4JWJ 0 JRNL AUTH Z.SHAO,W.YAN,J.PENG,X.ZUO,Y.ZOU,F.LI,D.GONG,R.MA,J.WU,Y.SHI, JRNL AUTH 2 Z.ZHANG,M.TENG,X.LI,Q.GONG JRNL TITL CRYSTAL STRUCTURE OF TRNA M1G9 METHYLTRANSFERASE TRM10: JRNL TITL 2 INSIGHT INTO THE CATALYTIC MECHANISM AND RECOGNITION OF TRNA JRNL TITL 3 SUBSTRATE. JRNL REF NUCLEIC ACIDS RES. V. 42 509 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24081582 JRNL DOI 10.1093/NAR/GKT869 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 56871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3354 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 33 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4529 ; 1.396 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 63 ; 0.547 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;33.956 ;24.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;15.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2493 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1969 ; 0.864 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 6 ; 0.033 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3200 ; 1.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1385 ; 2.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1329 ; 3.847 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 4JWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 BIS-TRIS PROPANE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.79150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.43050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.79150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.43050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 75 REMARK 465 GLY A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 ARG A 275 REMARK 465 LYS A 276 REMARK 465 MET B 75 REMARK 465 GLY B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 ARG B 275 REMARK 465 LYS B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 82 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 190 CG2 REMARK 470 THR A 249 CG2 REMARK 470 THR B 190 CG2 REMARK 470 THR B 249 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 195 CD OE1 OE2 REMARK 480 GLU A 236 CD OE1 OE2 REMARK 480 ARG B 121 NE CZ NH1 NH2 REMARK 480 LYS B 180 CD CE NZ REMARK 480 GLU B 191 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 195 CG GLU A 195 CD -0.095 REMARK 500 GLU A 236 CG GLU A 236 CD 0.101 REMARK 500 ASN A 239 N ASN A 239 CA -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 101 54.03 -109.46 REMARK 500 LYS A 142 -143.52 59.14 REMARK 500 THR A 150 -76.89 -123.65 REMARK 500 CYS B 101 53.62 -106.03 REMARK 500 LYS B 142 -141.72 59.86 REMARK 500 THR B 150 -73.89 -119.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JWF RELATED DB: PDB REMARK 900 RELATED ID: 4JWG RELATED DB: PDB REMARK 900 RELATED ID: 4JWH RELATED DB: PDB DBREF 4JWJ A 84 276 UNP Q12400 TRM10_YEAST 84 276 DBREF 4JWJ B 84 276 UNP Q12400 TRM10_YEAST 84 276 SEQADV 4JWJ MET A 75 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ GLY A 76 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 77 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 78 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 79 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 80 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 81 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS A 82 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ MET A 83 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ MET B 75 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ GLY B 76 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 77 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 78 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 79 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 80 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 81 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ HIS B 82 UNP Q12400 EXPRESSION TAG SEQADV 4JWJ MET B 83 UNP Q12400 EXPRESSION TAG SEQRES 1 A 202 MET GLY HIS HIS HIS HIS HIS HIS MET PRO ARG ILE ASN SEQRES 2 A 202 VAL ASN GLN THR ASP SER GLY ILE GLU ILE ILE LEU ASP SEQRES 3 A 202 CYS SER PHE ASP GLU LEU MET ASN ASP LYS GLU ILE VAL SEQRES 4 A 202 SER LEU SER ASN GLN VAL THR ARG ALA TYR SER ALA ASN SEQRES 5 A 202 ARG ARG ALA ASN HIS PHE ALA GLU ILE LYS VAL ALA PRO SEQRES 6 A 202 PHE ASP LYS ARG LEU LYS GLN ARG PHE GLU THR THR LEU SEQRES 7 A 202 LYS ASN THR ASN TYR GLU ASN TRP ASN HIS PHE LYS PHE SEQRES 8 A 202 LEU PRO ASP ASP LYS ILE MET PHE GLY ASP GLU HIS ILE SEQRES 9 A 202 SER LYS ASP LYS ILE VAL TYR LEU THR ALA ASP THR GLU SEQRES 10 A 202 GLU LYS LEU GLU LYS LEU GLU PRO GLY MET ARG TYR ILE SEQRES 11 A 202 VAL GLY GLY ILE VAL ASP LYS ASN ARG TYR LYS GLU LEU SEQRES 12 A 202 CYS LEU LYS LYS ALA GLN LYS MET GLY ILE PRO THR ARG SEQRES 13 A 202 ARG LEU PRO ILE ASP GLU TYR ILE ASN LEU GLU GLY ARG SEQRES 14 A 202 ARG VAL LEU THR THR THR HIS VAL VAL GLN LEU MET LEU SEQRES 15 A 202 LYS TYR PHE ASP ASP HIS ASN TRP LYS ASN ALA PHE GLU SEQRES 16 A 202 SER VAL LEU PRO PRO ARG LYS SEQRES 1 B 202 MET GLY HIS HIS HIS HIS HIS HIS MET PRO ARG ILE ASN SEQRES 2 B 202 VAL ASN GLN THR ASP SER GLY ILE GLU ILE ILE LEU ASP SEQRES 3 B 202 CYS SER PHE ASP GLU LEU MET ASN ASP LYS GLU ILE VAL SEQRES 4 B 202 SER LEU SER ASN GLN VAL THR ARG ALA TYR SER ALA ASN SEQRES 5 B 202 ARG ARG ALA ASN HIS PHE ALA GLU ILE LYS VAL ALA PRO SEQRES 6 B 202 PHE ASP LYS ARG LEU LYS GLN ARG PHE GLU THR THR LEU SEQRES 7 B 202 LYS ASN THR ASN TYR GLU ASN TRP ASN HIS PHE LYS PHE SEQRES 8 B 202 LEU PRO ASP ASP LYS ILE MET PHE GLY ASP GLU HIS ILE SEQRES 9 B 202 SER LYS ASP LYS ILE VAL TYR LEU THR ALA ASP THR GLU SEQRES 10 B 202 GLU LYS LEU GLU LYS LEU GLU PRO GLY MET ARG TYR ILE SEQRES 11 B 202 VAL GLY GLY ILE VAL ASP LYS ASN ARG TYR LYS GLU LEU SEQRES 12 B 202 CYS LEU LYS LYS ALA GLN LYS MET GLY ILE PRO THR ARG SEQRES 13 B 202 ARG LEU PRO ILE ASP GLU TYR ILE ASN LEU GLU GLY ARG SEQRES 14 B 202 ARG VAL LEU THR THR THR HIS VAL VAL GLN LEU MET LEU SEQRES 15 B 202 LYS TYR PHE ASP ASP HIS ASN TRP LYS ASN ALA PHE GLU SEQRES 16 B 202 SER VAL LEU PRO PRO ARG LYS HET SO4 A 301 5 HET SAH A 302 26 HET TRS A 303 8 HET SO4 A 304 5 HET SO4 A 305 5 HET SAH B 301 26 HET SO4 B 302 5 HET TRS B 303 8 HET TRS B 304 8 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 5 TRS 3(C4 H12 N O3 1+) FORMUL 12 HOH *328(H2 O) HELIX 1 1 PHE A 103 MET A 107 5 5 HELIX 2 2 ASN A 108 ALA A 129 1 22 HELIX 3 3 ASP A 141 THR A 151 1 11 HELIX 4 4 LEU A 152 TRP A 160 5 9 HELIX 5 5 ASP A 169 GLY A 174 5 6 HELIX 6 6 SER A 179 ASP A 181 5 3 HELIX 7 7 GLU A 216 GLY A 226 1 11 HELIX 8 8 ILE A 234 ILE A 238 5 5 HELIX 9 9 THR A 247 PHE A 259 1 13 HELIX 10 10 ASN A 263 LEU A 272 1 10 HELIX 11 11 PHE B 103 MET B 107 5 5 HELIX 12 12 ASN B 108 ALA B 129 1 22 HELIX 13 13 ASP B 141 THR B 151 1 11 HELIX 14 14 LEU B 152 TRP B 160 5 9 HELIX 15 15 ASP B 169 GLY B 174 5 6 HELIX 16 16 SER B 179 ASP B 181 5 3 HELIX 17 17 GLU B 216 GLY B 226 1 11 HELIX 18 18 ILE B 234 ILE B 238 5 5 HELIX 19 19 THR B 247 PHE B 259 1 13 HELIX 20 20 ASN B 263 LEU B 272 1 10 SHEET 1 A 6 PHE A 163 PHE A 165 0 SHEET 2 A 6 HIS A 131 ALA A 138 1 N VAL A 137 O LYS A 164 SHEET 3 A 6 THR A 91 ASP A 100 1 N LEU A 99 O LYS A 136 SHEET 4 A 6 ARG A 202 GLY A 206 1 O VAL A 205 N ILE A 98 SHEET 5 A 6 ILE A 183 LEU A 186 1 N VAL A 184 O ILE A 204 SHEET 6 A 6 THR A 229 ARG A 230 1 O ARG A 230 N TYR A 185 SHEET 1 B 6 PHE B 163 PHE B 165 0 SHEET 2 B 6 HIS B 131 ALA B 138 1 N VAL B 137 O LYS B 164 SHEET 3 B 6 THR B 91 ASP B 100 1 N LEU B 99 O LYS B 136 SHEET 4 B 6 ARG B 202 GLY B 206 1 O VAL B 205 N ILE B 98 SHEET 5 B 6 ILE B 183 LEU B 186 1 N VAL B 184 O ILE B 204 SHEET 6 B 6 THR B 229 ARG B 230 1 O ARG B 230 N TYR B 185 CISPEP 1 ALA A 138 PRO A 139 0 -12.56 CISPEP 2 ALA B 138 PRO B 139 0 -14.23 CISPEP 3 PRO B 273 PRO B 274 0 -5.54 SITE 1 AC1 5 ASP A 141 LYS A 142 HOH A 453 HOH A 550 SITE 2 AC1 5 HOH A 554 SITE 1 AC2 18 LEU A 186 THR A 187 ALA A 188 VAL A 205 SITE 2 AC2 18 GLY A 206 ILE A 208 ASP A 210 ASN A 212 SITE 3 AC2 18 TYR A 214 LEU A 217 CYS A 218 LEU A 232 SITE 4 AC2 18 ARG A 244 LEU A 246 VAL A 251 HOH A 403 SITE 5 AC2 18 HOH A 405 HOH A 410 SITE 1 AC3 4 ARG A 85 SER A 124 ARG A 127 ARG A 128 SITE 1 AC4 4 PRO A 228 ARG A 230 HOH A 447 HOH A 566 SITE 1 AC5 3 ASN A 161 HIS A 162 HOH A 505 SITE 1 AC6 20 LEU B 186 THR B 187 ALA B 188 VAL B 205 SITE 2 AC6 20 GLY B 206 ILE B 208 ASP B 210 ASN B 212 SITE 3 AC6 20 TYR B 214 LEU B 217 CYS B 218 LEU B 232 SITE 4 AC6 20 ARG B 244 VAL B 245 LEU B 246 THR B 248 SITE 5 AC6 20 VAL B 251 HOH B 403 HOH B 404 HOH B 409 SITE 1 AC7 6 ASP B 141 LYS B 142 LYS B 145 HOH B 435 SITE 2 AC7 6 HOH B 466 HOH B 548 SITE 1 AC8 7 VAL B 88 ASN B 89 ASN B 159 TRP B 160 SITE 2 AC8 7 ASN B 161 HIS B 162 LYS B 164 SITE 1 AC9 5 ARG B 85 SER B 124 ARG B 127 ARG B 128 SITE 2 AC9 5 HOH B 558 CRYST1 131.583 58.861 99.767 90.00 131.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007600 0.000000 0.006638 0.00000 SCALE2 0.000000 0.016989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013308 0.00000