HEADER TRANSFERASE 27-MAR-13 4JWP TITLE CRYSTAL STRUCTURE OF RIBOSOMAL-PROTEIN-ALANINE N-ACETYLTRANSFERASE TITLE 2 FROM BRUCELLA MELITENSIS IN COMPLEX WITH ACETYL COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: BAB1_1664; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, RIBOSOMAL-PROTEIN-ALANINE N-ACETYLTRANSFERASE, ACETYL COA, KEYWDS 2 COENZYME A, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SSGCID,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 3 20-SEP-23 4JWP 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4JWP 1 AUTHOR REVDAT 1 01-MAY-13 4JWP 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,T.ARAKAKI,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF RIBOSOMAL-PROTEIN-ALANINE JRNL TITL 2 N-ACETYLTRANSFERASE FROM BRUCELLA MELITENSIS IN COMPLEX WITH JRNL TITL 3 ACETYL COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2624 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2477 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3571 ; 1.444 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5634 ; 0.734 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.353 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;12.401 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3027 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 641 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1313 ; 0.955 ; 1.086 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1312 ; 0.952 ; 1.086 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 1.555 ; 1.621 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 164 REMARK 3 RESIDUE RANGE : A 201 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0790 35.9380 13.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.0246 REMARK 3 T33: 0.0609 T12: 0.0224 REMARK 3 T13: -0.0544 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.2812 L22: 1.1395 REMARK 3 L33: 0.9279 L12: 0.1139 REMARK 3 L13: 0.1817 L23: -0.1190 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0497 S13: -0.0283 REMARK 3 S21: 0.0307 S22: -0.0073 S23: -0.0031 REMARK 3 S31: 0.0464 S32: -0.0543 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 164 REMARK 3 RESIDUE RANGE : B 201 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6890 64.3410 19.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.0583 REMARK 3 T33: 0.0936 T12: 0.0559 REMARK 3 T13: -0.0805 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.8828 L22: 0.3374 REMARK 3 L33: 2.6126 L12: -0.2210 REMARK 3 L13: 1.2504 L23: 0.1961 REMARK 3 S TENSOR REMARK 3 S11: -0.1728 S12: -0.3150 S13: 0.1758 REMARK 3 S21: -0.0329 S22: 0.0367 S23: -0.0186 REMARK 3 S31: -0.3693 S32: -0.2775 S33: 0.1361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4JWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NATIVE STRUCTURE, PDB ENTRY 4J3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MCSG1, C7: 200MM CACL2, REMARK 280 100MM TRIS PH 8.5, 25% PEG 4000G 3350, BRABA.17352.A.A1.PS01094 REMARK 280 AT 20MG/ML, 2.5MM COA, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 PHE A 151 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 GLN B 63 CG CD OE1 NE2 REMARK 470 PHE B 76 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 434 O HOH B 435 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 76 168.48 79.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD2 REMARK 620 2 HOH A 310 O 79.8 REMARK 620 3 HOH A 426 O 79.7 86.2 REMARK 620 4 HOH A 444 O 150.0 77.6 79.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE2 REMARK 620 2 GLU A 112 OE2 119.5 REMARK 620 3 GLU A 112 OE1 77.5 55.4 REMARK 620 4 HOH A 325 O 87.7 97.5 132.8 REMARK 620 5 HOH A 335 O 64.7 170.7 120.7 90.9 REMARK 620 6 HOH A 369 O 100.5 100.9 74.6 152.7 69.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 25 OE2 REMARK 620 2 GLU B 25 OE1 46.5 REMARK 620 3 HOH B 334 O 87.8 77.2 REMARK 620 4 HOH B 384 O 104.2 57.7 74.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 121 O REMARK 620 2 HOH B 308 O 87.0 REMARK 620 3 HOH B 398 O 168.1 81.1 REMARK 620 4 HOH B 432 O 72.2 85.9 105.7 REMARK 620 5 HOH B 433 O 91.2 170.6 100.4 84.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J3G RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: BRABA.17352.A RELATED DB: TARGETTRACK DBREF 4JWP A 1 164 UNP Q2YRK4 Q2YRK4_BRUA2 1 164 DBREF 4JWP B 1 164 UNP Q2YRK4 Q2YRK4_BRUA2 1 164 SEQADV 4JWP MET A -20 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP ALA A -19 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -18 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -17 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -16 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -15 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -14 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS A -13 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP MET A -12 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY A -11 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP THR A -10 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP LEU A -9 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLU A -8 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP ALA A -7 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLN A -6 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP THR A -5 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLN A -4 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY A -3 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP PRO A -2 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY A -1 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP SER A 0 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP MET B -20 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP ALA B -19 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -18 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -17 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -16 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -15 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -14 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP HIS B -13 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP MET B -12 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY B -11 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP THR B -10 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP LEU B -9 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLU B -8 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP ALA B -7 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLN B -6 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP THR B -5 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLN B -4 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY B -3 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP PRO B -2 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP GLY B -1 UNP Q2YRK4 EXPRESSION TAG SEQADV 4JWP SER B 0 UNP Q2YRK4 EXPRESSION TAG SEQRES 1 A 185 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 185 ALA GLN THR GLN GLY PRO GLY SER MET THR LEU LEU ILE SEQRES 3 A 185 ARG HIS ALA THR GLU ALA ASP LEU PRO ALA LEU LEU ALA SEQRES 4 A 185 ILE TYR ASN ASP ALA VAL GLU ASN THR LEU ALA ILE TRP SEQRES 5 A 185 ASN GLU THR LEU VAL ASP LEU GLU ASN ARG HIS GLN TRP SEQRES 6 A 185 LEU GLU ASN ARG ASN ARG ASP GLY PHE PRO VAL LEU VAL SEQRES 7 A 185 ALA GLU ARG GLU GLY GLN VAL VAL GLY TYR ALA SER TYR SEQRES 8 A 185 GLY PRO PHE ARG PRO PHE GLU GLY PHE ARG HIS SER SER SEQRES 9 A 185 GLU LEU SER VAL TYR VAL ALA SER ASN ALA ARG GLY GLY SEQRES 10 A 185 GLY ILE GLY ARG THR LEU LEU ALA GLU LEU ILE GLU GLU SEQRES 11 A 185 ALA ARG GLU ARG LYS VAL HIS VAL LEU ILE ALA GLY ILE SEQRES 12 A 185 GLU ALA GLY ASN ALA ALA SER ILE ALA LEU HIS ARG SER SEQRES 13 A 185 GLN GLY PHE GLU GLU CYS GLY THR LEU LYS GLN VAL GLY SEQRES 14 A 185 GLN LYS PHE GLY ARG TRP LEU ASP LEU LEU PHE MET GLN SEQRES 15 A 185 LYS ILE LEU SEQRES 1 B 185 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 185 ALA GLN THR GLN GLY PRO GLY SER MET THR LEU LEU ILE SEQRES 3 B 185 ARG HIS ALA THR GLU ALA ASP LEU PRO ALA LEU LEU ALA SEQRES 4 B 185 ILE TYR ASN ASP ALA VAL GLU ASN THR LEU ALA ILE TRP SEQRES 5 B 185 ASN GLU THR LEU VAL ASP LEU GLU ASN ARG HIS GLN TRP SEQRES 6 B 185 LEU GLU ASN ARG ASN ARG ASP GLY PHE PRO VAL LEU VAL SEQRES 7 B 185 ALA GLU ARG GLU GLY GLN VAL VAL GLY TYR ALA SER TYR SEQRES 8 B 185 GLY PRO PHE ARG PRO PHE GLU GLY PHE ARG HIS SER SER SEQRES 9 B 185 GLU LEU SER VAL TYR VAL ALA SER ASN ALA ARG GLY GLY SEQRES 10 B 185 GLY ILE GLY ARG THR LEU LEU ALA GLU LEU ILE GLU GLU SEQRES 11 B 185 ALA ARG GLU ARG LYS VAL HIS VAL LEU ILE ALA GLY ILE SEQRES 12 B 185 GLU ALA GLY ASN ALA ALA SER ILE ALA LEU HIS ARG SER SEQRES 13 B 185 GLN GLY PHE GLU GLU CYS GLY THR LEU LYS GLN VAL GLY SEQRES 14 B 185 GLN LYS PHE GLY ARG TRP LEU ASP LEU LEU PHE MET GLN SEQRES 15 B 185 LYS ILE LEU HET ACO A 201 51 HET CA A 202 1 HET CA A 203 1 HET CL A 204 1 HET CA B 201 1 HET CA B 202 1 HETNAM ACO ACETYL COENZYME *A HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 ACO C23 H38 N7 O17 P3 S FORMUL 4 CA 4(CA 2+) FORMUL 6 CL CL 1- FORMUL 9 HOH *303(H2 O) HELIX 1 1 THR A 9 ALA A 11 5 3 HELIX 2 2 ASP A 12 THR A 27 1 16 HELIX 3 3 ASP A 37 ASP A 51 1 15 HELIX 4 4 PHE A 76 ARG A 80 5 5 HELIX 5 5 GLY A 97 ARG A 113 1 17 HELIX 6 6 ASN A 126 GLN A 136 1 11 HELIX 7 7 THR B 9 ALA B 11 5 3 HELIX 8 8 ASP B 12 THR B 27 1 16 HELIX 9 9 ASP B 37 GLY B 52 1 16 HELIX 10 10 PHE B 76 ARG B 80 5 5 HELIX 11 11 SER B 91 ARG B 94 5 4 HELIX 12 12 GLY B 97 ARG B 113 1 17 HELIX 13 13 ASN B 126 SER B 135 1 10 SHEET 1 A 7 LEU A 4 HIS A 7 0 SHEET 2 A 7 VAL A 55 ARG A 60 -1 O VAL A 57 N ARG A 6 SHEET 3 A 7 GLN A 63 PRO A 72 -1 O GLN A 63 N ARG A 60 SHEET 4 A 7 SER A 82 VAL A 89 -1 O SER A 86 N SER A 69 SHEET 5 A 7 VAL A 117 GLU A 123 1 O ILE A 119 N SER A 83 SHEET 6 A 7 ARG A 153 ILE A 163 -1 O LEU A 158 N ILE A 122 SHEET 7 A 7 GLU A 139 LYS A 150 -1 N LYS A 150 O ARG A 153 SHEET 1 B 7 LEU B 4 HIS B 7 0 SHEET 2 B 7 VAL B 55 ARG B 60 -1 O VAL B 57 N ARG B 6 SHEET 3 B 7 GLN B 63 PRO B 72 -1 O VAL B 65 N ALA B 58 SHEET 4 B 7 SER B 82 VAL B 89 -1 O TYR B 88 N TYR B 67 SHEET 5 B 7 VAL B 117 GLU B 123 1 O ILE B 119 N SER B 83 SHEET 6 B 7 ARG B 153 ILE B 163 -1 O LEU B 158 N ILE B 122 SHEET 7 B 7 GLU B 139 LYS B 150 -1 N CYS B 141 O PHE B 159 LINK OD2 ASP A 37 CA CA A 202 1555 1555 2.25 LINK OE2 GLU A 109 CA CA A 203 1555 1555 3.05 LINK OE2 GLU A 112 CA CA A 203 1555 1555 2.32 LINK OE1 GLU A 112 CA CA A 203 1555 1555 2.51 LINK CA CA A 202 O HOH A 310 1555 1555 2.32 LINK CA CA A 202 O HOH A 426 1555 1555 2.24 LINK CA CA A 202 O HOH A 444 1555 1555 2.36 LINK CA CA A 203 O HOH A 325 1555 1555 2.22 LINK CA CA A 203 O HOH A 335 1555 1555 2.29 LINK CA CA A 203 O HOH A 369 1555 1555 2.35 LINK OE2 GLU B 25 CA CA B 201 1555 1555 2.29 LINK OE1 GLU B 25 CA CA B 201 1555 1555 2.95 LINK O GLY B 121 CA CA B 202 1555 1555 2.25 LINK CA CA B 201 O HOH B 334 1555 1555 2.56 LINK CA CA B 201 O HOH B 384 1555 1555 2.81 LINK CA CA B 202 O HOH B 308 1555 1555 2.60 LINK CA CA B 202 O HOH B 398 1555 1555 2.28 LINK CA CA B 202 O HOH B 432 1555 1555 2.34 LINK CA CA B 202 O HOH B 433 1555 1555 2.33 SITE 1 AC1 38 ALA A 29 VAL A 87 TYR A 88 VAL A 89 SITE 2 AC1 38 ARG A 94 GLY A 95 GLY A 96 GLY A 97 SITE 3 AC1 38 ILE A 98 GLY A 99 ARG A 100 GLY A 121 SITE 4 AC1 38 ILE A 122 ASN A 126 ALA A 128 SER A 129 SITE 5 AC1 38 ALA A 131 HIS A 133 SER A 135 HOH A 305 SITE 6 AC1 38 HOH A 340 HOH A 352 HOH A 379 HOH A 383 SITE 7 AC1 38 HOH A 389 HOH A 390 HOH A 391 HOH A 392 SITE 8 AC1 38 HOH A 408 HOH A 410 HOH A 413 HOH A 414 SITE 9 AC1 38 HOH A 454 ASN B 21 GLU B 25 LEU B 35 SITE 10 AC1 38 HOH B 319 HOH B 358 SITE 1 AC2 6 ASP A 37 HOH A 310 HOH A 426 HOH A 444 SITE 2 AC2 6 GLU B 109 GLU B 112 SITE 1 AC3 6 GLU A 109 GLU A 112 HOH A 325 HOH A 335 SITE 2 AC3 6 HOH A 369 GLY B 125 SITE 1 AC4 1 ARG B 74 SITE 1 AC5 6 GLY A 95 HOH A 391 HOH A 415 GLU B 25 SITE 2 AC5 6 HOH B 334 HOH B 384 SITE 1 AC6 5 GLY B 121 HOH B 308 HOH B 398 HOH B 432 SITE 2 AC6 5 HOH B 433 CRYST1 72.420 74.380 67.550 90.00 91.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013808 0.000000 0.000391 0.00000 SCALE2 0.000000 0.013444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014810 0.00000