HEADER HYDROLASE 28-MAR-13 4JXE TITLE CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMSH-LIKE PROTEASE SST2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (245-435); COMPND 5 SYNONYM: SUPPRESSOR OF STE12 DELETION PROTEIN 2; COMPND 6 EC: 3.4.19.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SST2, SPAC19B12.10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS HELIX-BETA-HELIX SANDWICH, UBIQUITIN, DEQUBIQUITINATION, ZINC KEYWDS 2 METALLOPROTEASE, DEUBIQUITINATION, CYTOSOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.SHRESTHA,C.DAS REVDAT 3 20-SEP-23 4JXE 1 REMARK SEQADV LINK REVDAT 2 18-JUN-14 4JXE 1 JRNL REVDAT 1 30-APR-14 4JXE 0 JRNL AUTH R.K.SHRESTHA,J.A.RONAU,C.W.DAVIES,R.G.GUENETTE,E.R.STRIETER, JRNL AUTH 2 L.N.PAUL,C.DAS JRNL TITL INSIGHTS INTO THE MECHANISM OF DEUBIQUITINATION BY JAMM JRNL TITL 2 DEUBIQUITINASES FROM COCRYSTAL STRUCTURES OF THE ENZYME WITH JRNL TITL 3 THE SUBSTRATE AND PRODUCT. JRNL REF BIOCHEMISTRY V. 53 3199 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24787148 JRNL DOI 10.1021/BI5003162 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 80642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6547 - 4.4538 0.99 2699 146 0.1597 0.1720 REMARK 3 2 4.4538 - 3.5369 1.00 2688 157 0.1551 0.1812 REMARK 3 3 3.5369 - 3.0904 1.00 2679 141 0.1789 0.1986 REMARK 3 4 3.0904 - 2.8081 1.00 2671 147 0.1889 0.2190 REMARK 3 5 2.8081 - 2.6069 1.00 2688 128 0.1768 0.1959 REMARK 3 6 2.6069 - 2.4533 1.00 2670 134 0.1719 0.1886 REMARK 3 7 2.4533 - 2.3305 1.00 2671 131 0.1727 0.1979 REMARK 3 8 2.3305 - 2.2291 1.00 2679 139 0.1604 0.1874 REMARK 3 9 2.2291 - 2.1433 1.00 2649 149 0.1553 0.1894 REMARK 3 10 2.1433 - 2.0694 1.00 2650 147 0.1617 0.1941 REMARK 3 11 2.0694 - 2.0047 1.00 2623 155 0.1547 0.1725 REMARK 3 12 2.0047 - 1.9474 1.00 2654 146 0.1519 0.1962 REMARK 3 13 1.9474 - 1.8961 1.00 2650 151 0.1486 0.1994 REMARK 3 14 1.8961 - 1.8499 1.00 2640 140 0.1462 0.1827 REMARK 3 15 1.8499 - 1.8078 1.00 2661 130 0.1386 0.1702 REMARK 3 16 1.8078 - 1.7693 0.99 2629 144 0.1353 0.2043 REMARK 3 17 1.7693 - 1.7340 0.99 2659 150 0.1368 0.1486 REMARK 3 18 1.7340 - 1.7012 0.99 2615 147 0.1391 0.1864 REMARK 3 19 1.7012 - 1.6709 0.99 2612 142 0.1427 0.2170 REMARK 3 20 1.6709 - 1.6425 0.99 2598 151 0.1430 0.1973 REMARK 3 21 1.6425 - 1.6160 0.99 2627 149 0.1425 0.2074 REMARK 3 22 1.6160 - 1.5912 0.99 2644 124 0.1479 0.1853 REMARK 3 23 1.5912 - 1.5678 0.99 2625 121 0.1504 0.1999 REMARK 3 24 1.5678 - 1.5457 0.99 2677 108 0.1646 0.2266 REMARK 3 25 1.5457 - 1.5248 0.98 2632 133 0.1704 0.2707 REMARK 3 26 1.5248 - 1.5050 0.99 2600 134 0.1803 0.2284 REMARK 3 27 1.5050 - 1.4862 0.98 2603 146 0.1847 0.2399 REMARK 3 28 1.4862 - 1.4683 0.98 2596 131 0.2007 0.2584 REMARK 3 29 1.4683 - 1.4512 0.95 2518 114 0.1897 0.2445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3134 REMARK 3 ANGLE : 1.052 4259 REMARK 3 CHIRALITY : 0.067 499 REMARK 3 PLANARITY : 0.005 531 REMARK 3 DIHEDRAL : 13.467 1185 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP (CCP4) REMARK 200 STARTING MODEL: 2ZNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC, 20 % REMARK 280 W/V POLYETHYLENE GLYCOL 3,350 , 30% W/V 1,6- HEXANEDIOL , VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.71800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 MET A 244 REMARK 465 ALA A 245 REMARK 465 GLY A 246 REMARK 465 LYS A 435 REMARK 465 GLY B 239 REMARK 465 PRO B 240 REMARK 465 LEU B 241 REMARK 465 GLY B 242 REMARK 465 SER B 243 REMARK 465 MET B 244 REMARK 465 ALA B 245 REMARK 465 GLY B 246 REMARK 465 THR B 247 REMARK 465 VAL B 434 REMARK 465 LYS B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 311 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 638 O HOH A 706 2.12 REMARK 500 O ASN B 298 O3 TRS B 507 2.13 REMARK 500 OE1 GLN B 346 O HOH B 608 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 317 48.29 -155.43 REMARK 500 THR A 320 -74.12 -106.84 REMARK 500 GLN B 297 64.55 37.94 REMARK 500 ASN B 298 12.17 58.80 REMARK 500 CYS B 317 49.91 -155.63 REMARK 500 ASP B 321 80.11 40.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 341 NE2 REMARK 620 2 HIS A 343 NE2 104.6 REMARK 620 3 ASP A 354 OD2 104.0 119.0 REMARK 620 4 HOH A 634 O 114.1 102.2 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 356 NE2 REMARK 620 2 CYS A 397 SG 117.8 REMARK 620 3 HIS A 404 NE2 108.4 104.2 REMARK 620 4 HIS A 406 NE2 110.1 115.2 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 341 NE2 REMARK 620 2 HIS B 343 NE2 103.5 REMARK 620 3 ASP B 354 OD2 104.0 119.8 REMARK 620 4 HOH B 636 O 112.5 107.9 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 356 NE2 REMARK 620 2 CYS B 397 SG 116.1 REMARK 620 3 HIS B 404 NE2 111.8 103.9 REMARK 620 4 HIS B 406 NE2 111.8 112.2 99.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RZU RELATED DB: PDB REMARK 900 STRUCTURE OF CATALYTIC DOMAIN, HUMAN PROTEIN AMSH DBREF 4JXE A 245 435 UNP Q9P371 SST2_SCHPO 245 435 DBREF 4JXE B 245 435 UNP Q9P371 SST2_SCHPO 245 435 SEQADV 4JXE GLY A 239 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE PRO A 240 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE LEU A 241 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE GLY A 242 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE SER A 243 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE MET A 244 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE GLY B 239 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE PRO B 240 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE LEU B 241 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE GLY B 242 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE SER B 243 UNP Q9P371 EXPRESSION TAG SEQADV 4JXE MET B 244 UNP Q9P371 EXPRESSION TAG SEQRES 1 A 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 A 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 A 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 A 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 A 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 A 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 A 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 A 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 A 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 A 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 A 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 A 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 A 197 VAL LYS CYS ARG LYS PRO GLY LEU PHE HIS PRO HIS GLU SEQRES 14 A 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 A 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 A 197 VAL LYS SEQRES 1 B 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 B 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 B 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 B 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 B 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 B 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 B 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 B 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 B 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 B 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 B 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 B 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 B 197 VAL LYS CYS ARG LYS PRO GLY LEU PHE HIS PRO HIS GLU SEQRES 14 B 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 B 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 B 197 VAL LYS HET ZN A 501 1 HET ZN A 502 1 HET EDO A 503 4 HET EDO A 504 4 HET ZN B 501 1 HET ZN B 502 1 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET TRS B 507 8 HET TRS B 508 8 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 3 ZN 4(ZN 2+) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 13 TRS 2(C4 H12 N O3 1+) FORMUL 15 HOH *213(H2 O) HELIX 1 1 LEU A 268 LYS A 283 1 16 HELIX 2 2 GLU A 322 HIS A 332 1 11 HELIX 3 3 SER A 351 LEU A 365 1 15 HELIX 4 4 PRO A 388 CYS A 397 1 10 HELIX 5 5 LEU B 268 VAL B 277 1 10 HELIX 6 6 VAL B 277 LYS B 283 1 7 HELIX 7 7 GLU B 322 HIS B 332 1 11 HELIX 8 8 SER B 351 LEU B 365 1 15 HELIX 9 9 PRO B 388 CYS B 397 1 10 SHEET 1 A 8 TYR A 411 MET A 413 0 SHEET 2 A 8 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 A 8 ILE A 369 ALA A 374 -1 N ALA A 370 O PHE A 383 SHEET 4 A 8 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 A 8 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 A 8 ALA A 299 ILE A 307 -1 O VAL A 306 N ILE A 290 SHEET 7 A 8 ILE A 263 PRO A 266 1 N TYR A 264 O PHE A 300 SHEET 8 A 8 VAL A 420 ILE A 423 1 O ARG A 421 N LEU A 265 SHEET 1 B 7 TYR A 411 MET A 413 0 SHEET 2 B 7 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 B 7 ILE A 369 ALA A 374 -1 N ALA A 370 O PHE A 383 SHEET 4 B 7 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 B 7 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 B 7 ALA A 299 ILE A 307 -1 O VAL A 306 N ILE A 290 SHEET 7 B 7 GLN A 428 ASP A 431 1 O VAL A 430 N ILE A 307 SHEET 1 C 2 ALA B 252 TYR B 253 0 SHEET 2 C 2 PRO B 259 LEU B 260 -1 O LEU B 260 N ALA B 252 SHEET 1 D 8 TYR B 411 MET B 413 0 SHEET 2 D 8 THR B 379 LEU B 385 -1 N ARG B 384 O THR B 412 SHEET 3 D 8 ILE B 369 ALA B 374 -1 N ALA B 370 O PHE B 383 SHEET 4 D 8 LEU B 335 THR B 342 1 N TRP B 339 O ILE B 371 SHEET 5 D 8 CYS B 288 ARG B 296 -1 N GLY B 293 O LEU B 335 SHEET 6 D 8 ALA B 299 ILE B 307 -1 O ALA B 299 N ARG B 296 SHEET 7 D 8 ILE B 263 PRO B 266 1 N TYR B 264 O PHE B 300 SHEET 8 D 8 VAL B 420 ILE B 423 1 O ARG B 421 N LEU B 265 SHEET 1 E 7 TYR B 411 MET B 413 0 SHEET 2 E 7 THR B 379 LEU B 385 -1 N ARG B 384 O THR B 412 SHEET 3 E 7 ILE B 369 ALA B 374 -1 N ALA B 370 O PHE B 383 SHEET 4 E 7 LEU B 335 THR B 342 1 N TRP B 339 O ILE B 371 SHEET 5 E 7 CYS B 288 ARG B 296 -1 N GLY B 293 O LEU B 335 SHEET 6 E 7 ALA B 299 ILE B 307 -1 O ALA B 299 N ARG B 296 SHEET 7 E 7 GLN B 428 ASP B 431 1 O GLN B 428 N LEU B 305 LINK NE2 HIS A 341 ZN ZN A 501 1555 1555 2.04 LINK NE2 HIS A 343 ZN ZN A 501 1555 1555 2.02 LINK OD2 ASP A 354 ZN ZN A 501 1555 1555 1.89 LINK NE2 HIS A 356 ZN ZN A 502 1555 1555 2.01 LINK SG CYS A 397 ZN ZN A 502 1555 1555 2.30 LINK NE2 HIS A 404 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 406 ZN ZN A 502 1555 1555 1.89 LINK ZN ZN A 501 O HOH A 634 1555 1555 1.89 LINK NE2 HIS B 341 ZN ZN B 501 1555 1555 2.00 LINK NE2 HIS B 343 ZN ZN B 501 1555 1555 2.02 LINK OD2 ASP B 354 ZN ZN B 501 1555 1555 1.95 LINK NE2 HIS B 356 ZN ZN B 502 1555 1555 2.00 LINK SG CYS B 397 ZN ZN B 502 1555 1555 2.28 LINK NE2 HIS B 404 ZN ZN B 502 1555 1555 2.01 LINK NE2 HIS B 406 ZN ZN B 502 1555 1555 1.96 LINK ZN ZN B 501 O HOH B 636 1555 1555 2.23 CISPEP 1 ASP A 387 PRO A 388 0 10.18 CISPEP 2 GLN A 416 PRO A 417 0 4.40 CISPEP 3 ASP B 387 PRO B 388 0 13.51 CISPEP 4 GLN B 416 PRO B 417 0 8.18 SITE 1 AC1 4 HIS A 341 HIS A 343 ASP A 354 HOH A 634 SITE 1 AC2 4 HIS A 356 CYS A 397 HIS A 404 HIS A 406 SITE 1 AC3 3 GLY A 318 THR A 319 TYR A 361 SITE 1 AC4 2 LYS A 426 LEU A 427 SITE 1 AC5 4 HIS B 341 HIS B 343 ASP B 354 HOH B 636 SITE 1 AC6 4 HIS B 356 CYS B 397 HIS B 404 HIS B 406 SITE 1 AC7 4 PHE B 403 HIS B 404 HOH B 635 HOH B 674 SITE 1 AC8 3 VAL B 429 VAL B 430 ASP B 431 SITE 1 AC9 4 GLU B 255 LEU B 386 PRO B 388 GLU B 389 SITE 1 BC1 5 CYS B 288 CYS B 317 GLY B 318 THR B 319 SITE 2 BC1 5 TYR B 361 SITE 1 BC2 5 LYS B 249 ARG B 261 THR B 262 ASN B 298 SITE 2 BC2 5 HOH B 631 SITE 1 BC3 3 HIS B 304 HIS B 332 GLN B 428 CRYST1 56.139 69.436 62.018 90.00 104.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017813 0.000000 0.004721 0.00000 SCALE2 0.000000 0.014402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016681 0.00000