HEADER TRANSFERASE 28-MAR-13 4JXJ TITLE CRYSTAL STRUCTURE OF RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A TITLE 2 FROM RICKETTSIA BELLII DETERMINED BY IODIDE SAD PHASING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 16S RRNA (ADENINE(1518)-N(6)/ADENINE(1519)-N(6))- COMPND 5 DIMETHYLTRANSFERASE, 16S RRNA DIMETHYLADENOSINE TRANSFERASE, 16S RRNA COMPND 6 DIMETHYLASE, S-ADENOSYLMETHIONINE-6-N', N'-ADENOSYL(RRNA) COMPND 7 DIMETHYLTRANSFERASE; COMPND 8 EC: 2.1.1.182; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA BELLII; SOURCE 3 ORGANISM_TAXID: 336407; SOURCE 4 STRAIN: RML369-C; SOURCE 5 GENE: KSGA, RBE_0204, RSMA, YP_537374; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 28-FEB-24 4JXJ 1 REMARK SEQADV REVDAT 1 01-MAY-13 4JXJ 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,T.E.EDWARDS,D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF RIBOSOMAL RNA SMALL SUBUNIT JRNL TITL 2 METHYLTRANSFERASE A FROM RICKETTSIA BELLII DETERMINED BY JRNL TITL 3 IODIDE SAD PHASING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1896 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2584 ; 1.510 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4351 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 6.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;40.485 ;25.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;13.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2117 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 369 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 998 ; 0.920 ; 1.458 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 997 ; 0.912 ; 1.456 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1248 ; 1.514 ; 2.180 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0508 3.9333 27.8898 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.0521 REMARK 3 T33: 0.0608 T12: 0.0340 REMARK 3 T13: 0.0067 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.2910 L22: 0.4814 REMARK 3 L33: 2.3648 L12: -0.2074 REMARK 3 L13: 0.3538 L23: -0.4270 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0911 S13: -0.1755 REMARK 3 S21: -0.0441 S22: -0.0251 S23: -0.0044 REMARK 3 S31: 0.1917 S32: 0.2631 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6836 11.1452 12.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.0670 REMARK 3 T33: 0.0656 T12: 0.0022 REMARK 3 T13: 0.0160 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.5053 L22: 0.4649 REMARK 3 L33: 1.3120 L12: -0.4572 REMARK 3 L13: 1.1653 L23: -0.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0372 S13: 0.0174 REMARK 3 S21: -0.0348 S22: -0.0067 S23: 0.0434 REMARK 3 S31: -0.0306 S32: 0.0672 S33: -0.0160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF REMARK 200 OPTICS : RIGAKU VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD3/4(F6): 25% PEG-1500, 0.1M SPG REMARK 280 BUFFER, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.19000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 HIS A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 ILE A 14 REMARK 465 HIS A 15 REMARK 465 PRO A 16 REMARK 465 LEU A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 GLY A 21 REMARK 465 GLN A 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LEU A 101 CG CD1 CD2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 TYR A 119 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 SER A 156 OG REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 TYR A 185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 26 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 214 I IOD A 310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 26 -77.20 -84.17 REMARK 500 ASP A 27 105.78 -41.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 26 ASP A 27 -138.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-RIBEA.01122.A RELATED DB: TARGETTRACK DBREF 4JXJ A 1 268 UNP Q1RK29 RSMA_RICBR 1 268 SEQADV 4JXJ MET A -7 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ ALA A -6 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A -5 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A -4 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A -3 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A -2 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A -1 UNP Q1RK29 EXPRESSION TAG SEQADV 4JXJ HIS A 0 UNP Q1RK29 EXPRESSION TAG SEQRES 1 A 276 MET ALA HIS HIS HIS HIS HIS HIS MET LEU PRO SER ILE SEQRES 2 A 276 ALA LYS HIS ALA ALA SER HIS GLN ILE HIS PRO LEU LYS SEQRES 3 A 276 LYS HIS GLY GLN ASN PHE ILE PHE ASP GLY SER LEU CYS SEQRES 4 A 276 ASP LYS ILE VAL ARG ALA SER GLY LEU GLU GLU ASN SER SEQRES 5 A 276 ASN VAL LEU GLU ILE GLY PRO GLY THR GLY GLY LEU THR SEQRES 6 A 276 ARG SER ILE LEU HIS LYS ASN PRO LYS LEU LEU THR VAL SEQRES 7 A 276 ILE GLU THR ASP GLU ARG CYS ILE PRO LEU LEU ASN GLU SEQRES 8 A 276 ILE LYS GLN TYR HIS PRO ASN LEU ASN ILE ILE LYS GLN SEQRES 9 A 276 ASP ALA LEU LYS LEU LYS LEU SER ASP LEU ASN THR ASN SEQRES 10 A 276 LYS ILE THR ILE ILE SER ASN LEU PRO TYR HIS ILE GLY SEQRES 11 A 276 THR GLU LEU VAL ILE ARG TRP LEU LYS GLU SER SER LEU SEQRES 12 A 276 VAL ALA SER MET THR LEU MET LEU GLN LYS GLU VAL VAL SEQRES 13 A 276 GLU ARG ILE CYS ALA LYS PRO SER THR LYS ALA TYR GLY SEQRES 14 A 276 ARG LEU SER VAL ILE CYS SER LEU ILE ALA THR VAL GLU SEQRES 15 A 276 LYS CYS PHE ASP VAL ALA PRO THR ALA PHE TYR PRO PRO SEQRES 16 A 276 PRO LYS VAL TYR SER ALA ILE VAL LYS LEU THR PRO LEU SEQRES 17 A 276 GLU ASN ILE PRO ASN SER ASP LEU ILE SER LYS VAL GLU SEQRES 18 A 276 LEU ILE THR LYS MET ALA PHE ALA GLY ARG ARG LYS MET SEQRES 19 A 276 ILE LYS SER SER LEU LYS ASN LEU ALA PRO ASN ILE SER SEQRES 20 A 276 GLU LEU LEU ALA LYS LEU ASN ILE SER ASP ASN CYS ARG SEQRES 21 A 276 ALA GLU ASN LEU THR PRO ASN ASP TYR LEU SER LEU ALA SEQRES 22 A 276 SER LEU ILE HET EDO A 301 4 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET IOD A 309 1 HET IOD A 310 1 HET IOD A 311 1 HET IOD A 312 1 HET IOD A 313 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 IOD 12(I 1-) FORMUL 15 HOH *153(H2 O) HELIX 1 1 ASP A 27 GLY A 39 1 13 HELIX 2 2 GLY A 54 HIS A 62 1 9 HELIX 3 3 ASP A 74 ARG A 76 5 3 HELIX 4 4 CYS A 77 HIS A 88 1 12 HELIX 5 5 ASP A 97 LEU A 101 5 5 HELIX 6 6 LYS A 102 ASN A 107 5 6 HELIX 7 7 ILE A 121 GLU A 132 1 12 HELIX 8 8 LYS A 145 ALA A 153 1 9 HELIX 9 9 GLY A 161 ILE A 170 1 10 HELIX 10 10 ALA A 180 THR A 182 5 3 HELIX 11 11 ASN A 205 PHE A 220 1 16 HELIX 12 12 MET A 226 LEU A 231 1 6 HELIX 13 13 ASN A 237 LEU A 245 1 9 HELIX 14 14 ARG A 252 LEU A 256 5 5 HELIX 15 15 THR A 257 SER A 266 1 10 SHEET 1 A 2 PHE A 24 ILE A 25 0 SHEET 2 A 2 PHE A 184 TYR A 185 -1 O TYR A 185 N PHE A 24 SHEET 1 B 7 LEU A 91 ILE A 94 0 SHEET 2 B 7 LEU A 67 ILE A 71 1 N VAL A 70 O ILE A 94 SHEET 3 B 7 ASN A 45 ILE A 49 1 N VAL A 46 O LEU A 67 SHEET 4 B 7 ILE A 111 ASN A 116 1 O THR A 112 N ASN A 45 SHEET 5 B 7 VAL A 136 GLN A 144 1 O ALA A 137 N ILE A 111 SHEET 6 B 7 SER A 192 PRO A 199 -1 O LEU A 197 N MET A 139 SHEET 7 B 7 ALA A 171 VAL A 179 -1 N GLU A 174 O LYS A 196 CISPEP 1 TYR A 185 PRO A 186 0 -12.37 SITE 1 AC1 3 ARG A 36 SER A 248 HOH A 485 SITE 1 AC2 1 ILE A 84 SITE 1 AC3 3 ASN A 45 LYS A 110 THR A 112 SITE 1 AC4 1 ARG A 162 SITE 1 AC5 1 ARG A 162 SITE 1 AC6 2 PRO A 204 HOH A 442 SITE 1 AC7 1 LEU A 214 SITE 1 AC8 2 ARG A 223 HOH A 450 SITE 1 AC9 1 ASN A 255 CRYST1 80.380 81.330 38.490 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012441 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025981 0.00000