HEADER TRANSFERASE 28-MAR-13 4JXQ TITLE CRYSTAL STRUCTURE OF A GNAT SUPERFAMILY PHOSPHINOTHRICIN TITLE 2 ACETYLTRANSFERASE (PAT) FROM SINORHIZOBIUM MELILOTI 1021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R03223, SMC03840; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, GNAT, PHOSPHINOTHRICIN KEYWDS 3 ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.MAJOREK,D.R.COOPER,T.OSINSKI,M.AHMED,M.STEAD,B.HILLERICH, AUTHOR 2 R.SEIDEL,J.B.BONANNO,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL GENOMICS AUTHOR 3 RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 16-OCT-24 4JXQ 1 REMARK REVDAT 3 13-APR-22 4JXQ 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 15-MAY-13 4JXQ 1 TITLE REVDAT 1 08-MAY-13 4JXQ 0 JRNL AUTH K.A.MAJOREK,D.R.COOPER,M.AHMED,M.STEAD,B.HILLERICH,R.SEIDEL, JRNL AUTH 2 J.B.BONANNO,S.C.ALMO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF A GNAT SUPERFAMILY PHOSPHINOTHRICIN JRNL TITL 2 ACETYLTRANSFERASE (PAT) FROM SINORHIZOBIUM MELILOTI 1021 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 114953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7027 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.967 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3320 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3221 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4553 ; 1.983 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7460 ; 1.099 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;33.585 ;21.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;12.568 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3837 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 785 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3318 ; 8.034 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 132 ;31.075 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3751 ;14.319 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 32.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 46.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : 0.62800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 SOLVE/RESOLVE, SHELXD, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-AMMONIUM CITRATE PH 5.0, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.73050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.80550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.24050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.80550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.73050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.24050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 51.46100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -40.24050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 125.41650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 32 CD GLU A 32 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 145 CG - SE - CE ANGL. DEV. = -35.3 DEGREES REMARK 500 MSE A 145 CG - SE - CE ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 163 CG - CD - NE ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG B 163 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 33.39 -86.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FLC B 203 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 604 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-022848 RELATED DB: TARGETTRACK DBREF 4JXQ A 1 185 UNP Q92L60 Q92L60_RHIME 1 185 DBREF 4JXQ B 1 185 UNP Q92L60 Q92L60_RHIME 1 185 SEQADV 4JXQ SER A 0 UNP Q92L60 EXPRESSION TAG SEQADV 4JXQ SER B 0 UNP Q92L60 EXPRESSION TAG SEQRES 1 A 186 SER MSE THR ALA THR LEU ARG ASP ALA VAL ALA ALA ASP SEQRES 2 A 186 LEU ARG SER ILE THR GLU ILE TYR ARG GLU SER VAL LEU SEQRES 3 A 186 ASN GLY VAL ALA THR TYR GLU GLU THR PRO PRO SER GLU SEQRES 4 A 186 ALA GLU MSE ALA LEU ARG PHE SER THR ILE THR GLY ASN SEQRES 5 A 186 GLY TYR PRO TYR VAL VAL ALA LEU ASP GLU ARG GLY ALA SEQRES 6 A 186 VAL ILE GLY TYR ALA TYR ALA SER ALA PHE ARG ASN ARG SEQRES 7 A 186 THR ALA TYR ARG PHE LEU VAL GLU ASP SER ILE TYR LEU SEQRES 8 A 186 SER PRO GLU ALA ARG GLY LYS GLY ILE GLY LYS ALA LEU SEQRES 9 A 186 LEU SER GLU LEU VAL GLY ARG CYS THR ALA LEU GLY PHE SEQRES 10 A 186 ARG GLN MSE ILE ALA VAL ILE GLY GLY ALA HIS PRO SER SEQRES 11 A 186 SER ILE ALA LEU HIS ARG ALA LEU GLY PHE GLU LEU GLN SEQRES 12 A 186 GLY LEU MSE LYS ALA THR GLY PHE LYS HIS GLY ARG TRP SEQRES 13 A 186 LEU ASP THR ALA PHE MSE GLN ARG PRO LEU GLY GLU GLY SEQRES 14 A 186 THR ALA THR LYS PRO THR GLU GLY VAL TYR PRO ASP THR SEQRES 15 A 186 LEU TYR ARG SER SEQRES 1 B 186 SER MSE THR ALA THR LEU ARG ASP ALA VAL ALA ALA ASP SEQRES 2 B 186 LEU ARG SER ILE THR GLU ILE TYR ARG GLU SER VAL LEU SEQRES 3 B 186 ASN GLY VAL ALA THR TYR GLU GLU THR PRO PRO SER GLU SEQRES 4 B 186 ALA GLU MSE ALA LEU ARG PHE SER THR ILE THR GLY ASN SEQRES 5 B 186 GLY TYR PRO TYR VAL VAL ALA LEU ASP GLU ARG GLY ALA SEQRES 6 B 186 VAL ILE GLY TYR ALA TYR ALA SER ALA PHE ARG ASN ARG SEQRES 7 B 186 THR ALA TYR ARG PHE LEU VAL GLU ASP SER ILE TYR LEU SEQRES 8 B 186 SER PRO GLU ALA ARG GLY LYS GLY ILE GLY LYS ALA LEU SEQRES 9 B 186 LEU SER GLU LEU VAL GLY ARG CYS THR ALA LEU GLY PHE SEQRES 10 B 186 ARG GLN MSE ILE ALA VAL ILE GLY GLY ALA HIS PRO SER SEQRES 11 B 186 SER ILE ALA LEU HIS ARG ALA LEU GLY PHE GLU LEU GLN SEQRES 12 B 186 GLY LEU MSE LYS ALA THR GLY PHE LYS HIS GLY ARG TRP SEQRES 13 B 186 LEU ASP THR ALA PHE MSE GLN ARG PRO LEU GLY GLU GLY SEQRES 14 B 186 THR ALA THR LYS PRO THR GLU GLY VAL TYR PRO ASP THR SEQRES 15 B 186 LEU TYR ARG SER MODRES 4JXQ MSE A 1 MET SELENOMETHIONINE MODRES 4JXQ MSE A 41 MET SELENOMETHIONINE MODRES 4JXQ MSE A 119 MET SELENOMETHIONINE MODRES 4JXQ MSE A 145 MET SELENOMETHIONINE MODRES 4JXQ MSE A 161 MET SELENOMETHIONINE MODRES 4JXQ MSE B 1 MET SELENOMETHIONINE MODRES 4JXQ MSE B 41 MET SELENOMETHIONINE MODRES 4JXQ MSE B 119 MET SELENOMETHIONINE MODRES 4JXQ MSE B 145 MET SELENOMETHIONINE MODRES 4JXQ MSE B 161 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 41 8 HET MSE A 119 8 HET MSE A 145 23 HET MSE A 161 8 HET MSE B 1 16 HET MSE B 41 13 HET MSE B 119 8 HET MSE B 145 13 HET MSE B 161 8 HET EDO A 201 8 HET FLC A 202 13 HET 2PE A 203 28 HET PEG B 201 7 HET EDO B 202 4 HET FLC B 203 9 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 5 2PE C18 H38 O10 FORMUL 6 PEG C4 H10 O3 FORMUL 9 HOH *669(H2 O) HELIX 1 1 VAL A 9 ALA A 11 5 3 HELIX 2 2 ASP A 12 GLY A 27 1 16 HELIX 3 3 SER A 37 ASN A 51 1 15 HELIX 4 4 ARG A 77 ARG A 81 5 5 HELIX 5 5 PRO A 92 ARG A 95 5 4 HELIX 6 6 GLY A 98 GLY A 115 1 18 HELIX 7 7 HIS A 127 LEU A 137 1 11 HELIX 8 8 VAL B 9 ALA B 11 5 3 HELIX 9 9 ASP B 12 GLY B 27 1 16 HELIX 10 10 SER B 37 ASN B 51 1 15 HELIX 11 11 ARG B 77 ARG B 81 5 5 HELIX 12 12 PRO B 92 ARG B 95 5 4 HELIX 13 13 GLY B 98 GLY B 115 1 18 HELIX 14 14 HIS B 127 LEU B 137 1 11 SHEET 1 A 7 THR A 4 ASP A 7 0 SHEET 2 A 7 TYR A 55 LEU A 59 -1 O VAL A 57 N ARG A 6 SHEET 3 A 7 VAL A 65 ALA A 73 -1 O ALA A 69 N VAL A 56 SHEET 4 A 7 LEU A 83 LEU A 90 -1 O GLU A 85 N SER A 72 SHEET 5 A 7 GLN A 118 GLY A 124 1 O ILE A 120 N VAL A 84 SHEET 6 A 7 ARG A 154 PRO A 164 -1 O ALA A 159 N ILE A 123 SHEET 7 A 7 GLU A 140 LYS A 151 -1 N GLY A 149 O LEU A 156 SHEET 1 B 7 THR B 4 ASP B 7 0 SHEET 2 B 7 TYR B 55 LEU B 59 -1 O VAL B 57 N ARG B 6 SHEET 3 B 7 VAL B 65 ALA B 73 -1 O ALA B 69 N VAL B 56 SHEET 4 B 7 LEU B 83 LEU B 90 -1 O TYR B 89 N TYR B 68 SHEET 5 B 7 GLN B 118 GLY B 124 1 O ILE B 120 N VAL B 84 SHEET 6 B 7 ARG B 154 PRO B 164 -1 O ALA B 159 N ILE B 123 SHEET 7 B 7 GLU B 140 LYS B 151 -1 N GLN B 142 O PHE B 160 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C GLU A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N ALA A 42 1555 1555 1.34 LINK C GLN A 118 N MSE A 119 1555 1555 1.35 LINK C MSE A 119 N ILE A 120 1555 1555 1.32 LINK C LEU A 144 N MSE A 145 1555 1555 1.35 LINK C MSE A 145 N LYS A 146 1555 1555 1.33 LINK C PHE A 160 N MSE A 161 1555 1555 1.32 LINK C MSE A 161 N GLN A 162 1555 1555 1.33 LINK C AMSE B 1 N ATHR B 2 1555 1555 1.32 LINK C BMSE B 1 N BTHR B 2 1555 1555 1.32 LINK C GLU B 40 N MSE B 41 1555 1555 1.34 LINK C MSE B 41 N ALA B 42 1555 1555 1.36 LINK C GLN B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N ILE B 120 1555 1555 1.32 LINK C LEU B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N LYS B 146 1555 1555 1.33 LINK C PHE B 160 N MSE B 161 1555 1555 1.32 LINK C MSE B 161 N GLN B 162 1555 1555 1.32 CISPEP 1 TYR A 178 PRO A 179 0 7.55 CISPEP 2 TYR B 178 PRO B 179 0 4.02 SITE 1 AC1 10 PRO A 164 GLY A 166 GLU A 167 GLY A 168 SITE 2 AC1 10 THR A 169 HOH A 366 HOH A 520 HOH A 568 SITE 3 AC1 10 HOH A 635 HOH B 492 SITE 1 AC2 17 LEU A 90 ARG A 95 GLY A 96 GLY A 100 SITE 2 AC2 17 SER A 129 SER A 130 LEU A 133 HOH A 322 SITE 3 AC2 17 HOH A 331 HOH A 361 HOH A 381 HOH A 450 SITE 4 AC2 17 HOH A 482 HOH A 523 HOH A 598 HOH A 639 SITE 5 AC2 17 ARG B 135 SITE 1 AC3 7 GLY A 52 HOH A 379 HOH A 452 HOH A 461 SITE 2 AC3 7 HOH A 472 HOH A 619 HOH A 626 SITE 1 AC4 6 ARG A 62 HOH A 621 GLY B 50 ASN B 51 SITE 2 AC4 6 TYR B 178 THR B 181 SITE 1 AC5 3 HOH B 510 HOH B 585 HOH B 601 SITE 1 AC6 13 ARG B 95 GLY B 96 LYS B 97 GLY B 98 SITE 2 AC6 13 ILE B 99 GLY B 100 LYS B 101 HOH B 347 SITE 3 AC6 13 HOH B 463 HOH B 529 HOH B 582 HOH B 602 SITE 4 AC6 13 HOH B 630 CRYST1 51.461 80.481 83.611 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011960 0.00000 HETATM 1 N MSE A 1 37.733 1.745 98.372 1.00 54.53 N ANISOU 1 N MSE A 1 7656 9419 3641 -59 -4635 -1480 N HETATM 2 CA MSE A 1 37.466 3.218 98.198 1.00 59.77 C ANISOU 2 CA MSE A 1 5196 8816 8697 1352 -2320 -306 C HETATM 3 C MSE A 1 36.204 3.411 97.403 1.00 57.28 C ANISOU 3 C MSE A 1 6313 9038 6413 583 -3147 -1139 C HETATM 4 O MSE A 1 35.867 2.601 96.518 1.00 70.98 O ANISOU 4 O MSE A 1 8509 9272 9188 1382 -1896 -4208 O HETATM 5 CB MSE A 1 38.601 3.967 97.476 1.00 66.40 C ANISOU 5 CB MSE A 1 6980 10182 8063 735 -1035 207 C