HEADER TRANSFERASE 28-MAR-13 4JXU TITLE STRUCTURE OF AMINOTRANSFERASE ILVE2 FROM SINORHIZOBIUM MELILOTI TITLE 2 COMPLEXED WITH PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.42; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: ILVE2, R00971, SMC00042; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PFAM AMINOTRAN_4, AMINOTRANSFERASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,M.T.CYMBOROWSKI,K.A.MAJOREK,E.NIEDZIALKOWSKA,P.J.POREBSKI, AUTHOR 2 M.STEAD,J.HAMMONDS,R.SEIDEL,M.AHMED,J.B.BONANNO,S.C.ALMO,W.MINOR,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 13-APR-22 4JXU 1 AUTHOR JRNL SEQADV LINK REVDAT 3 24-JAN-18 4JXU 1 AUTHOR REVDAT 2 15-NOV-17 4JXU 1 REMARK REVDAT 1 29-MAY-13 4JXU 0 JRNL AUTH D.R.COOPER,M.T.CYMBOROWSKI,K.A MAJOREK,E.NIEDZIALKOWSKA, JRNL AUTH 2 P.J.POREBSKI,M.STEAD,J.HAMMONDS,R.SEIDEL,M.AHMED, JRNL AUTH 3 J.B.BONANNO,S.C.ALMO,W.MINOR JRNL TITL STRUCTURE OF AMINOTRANSFERASE ILVE2 FROM SINORHIZOBIUM JRNL TITL 2 MELILOTI COMPLEXED WITH PLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 24472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.401 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4469 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4134 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6081 ; 1.690 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9508 ; 1.066 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 6.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;29.097 ;23.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;15.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.730 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5067 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1025 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 289 B 2 289 15933 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0523 28.1592 52.1573 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0487 REMARK 3 T33: 0.0109 T12: 0.0223 REMARK 3 T13: -0.0124 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8368 L22: 1.6804 REMARK 3 L33: 0.9141 L12: -0.3469 REMARK 3 L13: -0.2387 L23: -0.1619 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.0192 S13: -0.0217 REMARK 3 S21: 0.1121 S22: 0.0700 S23: -0.0362 REMARK 3 S31: 0.0753 S32: 0.0068 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9949 18.3530 30.2651 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0393 REMARK 3 T33: 0.0441 T12: 0.0055 REMARK 3 T13: 0.0026 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.6287 L22: 1.2090 REMARK 3 L33: 0.2823 L12: -0.1600 REMARK 3 L13: -0.1378 L23: 0.2709 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.0112 S13: -0.1082 REMARK 3 S21: -0.0023 S22: 0.0257 S23: 0.0610 REMARK 3 S31: 0.0142 S32: 0.0139 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8658 27.3901 -11.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0694 REMARK 3 T33: 0.0200 T12: 0.0386 REMARK 3 T13: -0.0025 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4427 L22: 0.6193 REMARK 3 L33: 0.8838 L12: -0.2321 REMARK 3 L13: -0.1859 L23: -0.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.0304 S13: 0.0214 REMARK 3 S21: -0.0916 S22: -0.0396 S23: -0.0191 REMARK 3 S31: 0.2046 S32: 0.0423 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 132 B 286 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8975 30.6206 11.2725 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.1022 REMARK 3 T33: 0.0330 T12: 0.0175 REMARK 3 T13: 0.0092 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.5520 L22: 1.0792 REMARK 3 L33: 0.9490 L12: -0.4119 REMARK 3 L13: 0.0431 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0225 S13: 0.0630 REMARK 3 S21: -0.0418 S22: -0.0776 S23: -0.1434 REMARK 3 S31: 0.0773 S32: 0.1301 S33: 0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4JXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM PHOSPHATE-CITRATE REMARK 280 PH 4.2, 20 % PEG 8000, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.39950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.39950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH MONOMER IN THE ASU IS HALF OF 2 DISTINCT DIMERS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.00600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.00600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 MSE A 130 REMARK 465 GLY A 131 REMARK 465 ASN A 132 REMARK 465 GLY A 133 REMARK 465 HIS A 134 REMARK 465 THR A 290 REMARK 465 GLU A 291 REMARK 465 ARG A 292 REMARK 465 GLU A 293 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 129 REMARK 465 MSE B 130 REMARK 465 GLY B 131 REMARK 465 ASN B 132 REMARK 465 GLY B 133 REMARK 465 HIS B 134 REMARK 465 ALA B 135 REMARK 465 GLY B 136 REMARK 465 ARG B 292 REMARK 465 GLU B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 93 CE NZ REMARK 470 ASP B 48 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 120 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 155 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 71.26 -118.41 REMARK 500 ASP A 53 25.68 49.50 REMARK 500 SER A 108 -143.24 -130.82 REMARK 500 GLU A 191 -168.00 -172.07 REMARK 500 SER A 194 11.89 -146.38 REMARK 500 GLU A 266 -114.92 50.65 REMARK 500 ASP B 53 24.44 49.60 REMARK 500 SER B 108 -142.31 -135.06 REMARK 500 GLU B 191 -162.03 -170.88 REMARK 500 SER B 194 15.80 -149.35 REMARK 500 TYR B 256 62.34 66.26 REMARK 500 GLU B 266 -114.81 51.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-021705 RELATED DB: TARGETTRACK DBREF 4JXU A 2 293 UNP Q92RC2 Q92RC2_RHIME 2 293 DBREF 4JXU B 2 293 UNP Q92RC2 Q92RC2_RHIME 2 293 SEQADV 4JXU GLN A -1 UNP Q92RC2 EXPRESSION TAG SEQADV 4JXU SER A 0 UNP Q92RC2 EXPRESSION TAG SEQADV 4JXU MSE A 1 UNP Q92RC2 EXPRESSION TAG SEQADV 4JXU GLN B -1 UNP Q92RC2 EXPRESSION TAG SEQADV 4JXU SER B 0 UNP Q92RC2 EXPRESSION TAG SEQADV 4JXU MSE B 1 UNP Q92RC2 EXPRESSION TAG SEQRES 1 A 295 GLN SER MSE ALA VAL ASP THR SER PRO ARG SER THR THR SEQRES 2 A 295 TRP THR PHE VAL ASP GLY GLU TRP LEU ALA GLY ASN PRO SEQRES 3 A 295 PRO LEU ILE GLY PRO THR SER HIS ALA MSE TRP LEU GLY SEQRES 4 A 295 SER THR VAL PHE ASP GLY ALA ARG TRP PHE ASP GLY ILE SEQRES 5 A 295 ALA PRO ASP LEU ASP LEU HIS CYS GLN ARG VAL ASN ARG SEQRES 6 A 295 SER ALA GLU ALA LEU GLY LEU LYS PRO THR MSE SER ALA SEQRES 7 A 295 GLU GLU ILE GLU GLY LEU ALA TRP GLU GLY VAL LYS LYS SEQRES 8 A 295 PHE ASP GLY LYS THR ALA ILE TYR VAL LYS PRO MSE TYR SEQRES 9 A 295 TRP GLY GLU HIS GLY SER TRP SER VAL VAL ALA VAL ASP SEQRES 10 A 295 PRO GLU SER THR ARG PHE ALA LEU CYS LEU PHE GLU ALA SEQRES 11 A 295 PRO MSE GLY ASN GLY HIS ALA GLY SER SER LEU THR LEU SEQRES 12 A 295 SER PRO PHE ARG ARG PRO THR LEU GLU CYS MSE PRO THR SEQRES 13 A 295 ASP ALA LLP ALA GLY CYS LEU TYR PRO ASN ASN ALA ARG SEQRES 14 A 295 ILE LEU ASN GLU ALA ARG SER ARG GLY PHE ASP ASN ALA SEQRES 15 A 295 LEU VAL ARG ASP MSE LEU GLY ASN ILE ALA GLU THR GLY SEQRES 16 A 295 SER SER ASN ILE PHE MSE VAL LYS ASP GLY VAL VAL PHE SEQRES 17 A 295 THR PRO ALA ALA ASN ARG THR PHE LEU ALA GLY ILE THR SEQRES 18 A 295 ARG SER ARG VAL MSE GLY LEU LEU SER GLU ALA GLY PHE SEQRES 19 A 295 GLU VAL ILE GLU THR SER LEU THR MSE ALA ASP PHE GLU SEQRES 20 A 295 GLY ALA ASP GLU ILE PHE THR SER GLY ASN TYR SER LYS SEQRES 21 A 295 VAL LEU PRO VAL THR ARG LEU GLU GLN ARG GLU LEU GLN SEQRES 22 A 295 ALA GLY PRO VAL THR ALA LYS ALA ARG ASP LEU TYR MSE SEQRES 23 A 295 ASP TRP ALA HIS ALA THR GLU ARG GLU SEQRES 1 B 295 GLN SER MSE ALA VAL ASP THR SER PRO ARG SER THR THR SEQRES 2 B 295 TRP THR PHE VAL ASP GLY GLU TRP LEU ALA GLY ASN PRO SEQRES 3 B 295 PRO LEU ILE GLY PRO THR SER HIS ALA MSE TRP LEU GLY SEQRES 4 B 295 SER THR VAL PHE ASP GLY ALA ARG TRP PHE ASP GLY ILE SEQRES 5 B 295 ALA PRO ASP LEU ASP LEU HIS CYS GLN ARG VAL ASN ARG SEQRES 6 B 295 SER ALA GLU ALA LEU GLY LEU LYS PRO THR MSE SER ALA SEQRES 7 B 295 GLU GLU ILE GLU GLY LEU ALA TRP GLU GLY VAL LYS LYS SEQRES 8 B 295 PHE ASP GLY LYS THR ALA ILE TYR VAL LYS PRO MSE TYR SEQRES 9 B 295 TRP GLY GLU HIS GLY SER TRP SER VAL VAL ALA VAL ASP SEQRES 10 B 295 PRO GLU SER THR ARG PHE ALA LEU CYS LEU PHE GLU ALA SEQRES 11 B 295 PRO MSE GLY ASN GLY HIS ALA GLY SER SER LEU THR LEU SEQRES 12 B 295 SER PRO PHE ARG ARG PRO THR LEU GLU CYS MSE PRO THR SEQRES 13 B 295 ASP ALA LLP ALA GLY CYS LEU TYR PRO ASN ASN ALA ARG SEQRES 14 B 295 ILE LEU ASN GLU ALA ARG SER ARG GLY PHE ASP ASN ALA SEQRES 15 B 295 LEU VAL ARG ASP MSE LEU GLY ASN ILE ALA GLU THR GLY SEQRES 16 B 295 SER SER ASN ILE PHE MSE VAL LYS ASP GLY VAL VAL PHE SEQRES 17 B 295 THR PRO ALA ALA ASN ARG THR PHE LEU ALA GLY ILE THR SEQRES 18 B 295 ARG SER ARG VAL MSE GLY LEU LEU SER GLU ALA GLY PHE SEQRES 19 B 295 GLU VAL ILE GLU THR SER LEU THR MSE ALA ASP PHE GLU SEQRES 20 B 295 GLY ALA ASP GLU ILE PHE THR SER GLY ASN TYR SER LYS SEQRES 21 B 295 VAL LEU PRO VAL THR ARG LEU GLU GLN ARG GLU LEU GLN SEQRES 22 B 295 ALA GLY PRO VAL THR ALA LYS ALA ARG ASP LEU TYR MSE SEQRES 23 B 295 ASP TRP ALA HIS ALA THR GLU ARG GLU MODRES 4JXU MSE A 34 MET SELENOMETHIONINE MODRES 4JXU MSE A 74 MET SELENOMETHIONINE MODRES 4JXU MSE A 101 MET SELENOMETHIONINE MODRES 4JXU MSE A 152 MET SELENOMETHIONINE MODRES 4JXU LLP A 157 LYS MODRES 4JXU MSE A 185 MET SELENOMETHIONINE MODRES 4JXU MSE A 199 MET SELENOMETHIONINE MODRES 4JXU MSE A 224 MET SELENOMETHIONINE MODRES 4JXU MSE A 241 MET SELENOMETHIONINE MODRES 4JXU MSE A 284 MET SELENOMETHIONINE MODRES 4JXU MSE B 34 MET SELENOMETHIONINE MODRES 4JXU MSE B 74 MET SELENOMETHIONINE MODRES 4JXU MSE B 101 MET SELENOMETHIONINE MODRES 4JXU MSE B 152 MET SELENOMETHIONINE MODRES 4JXU LLP B 157 LYS MODRES 4JXU MSE B 185 MET SELENOMETHIONINE MODRES 4JXU MSE B 199 MET SELENOMETHIONINE MODRES 4JXU MSE B 224 MET SELENOMETHIONINE MODRES 4JXU MSE B 241 MET SELENOMETHIONINE MODRES 4JXU MSE B 284 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 74 8 HET MSE A 101 8 HET MSE A 152 8 HET LLP A 157 24 HET MSE A 185 8 HET MSE A 199 8 HET MSE A 224 8 HET MSE A 241 8 HET MSE A 284 8 HET MSE B 34 8 HET MSE B 74 8 HET MSE B 101 8 HET MSE B 152 8 HET LLP B 157 24 HET MSE B 185 8 HET MSE B 199 8 HET MSE B 224 8 HET MSE B 241 8 HET MSE B 284 8 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *162(H2 O) HELIX 1 1 SER A 31 GLY A 37 1 7 HELIX 2 2 ASP A 53 LEU A 68 1 16 HELIX 3 3 SER A 75 LYS A 88 1 14 HELIX 4 4 ASP A 115 GLU A 117 5 3 HELIX 5 5 ALA A 158 CYS A 160 5 3 HELIX 6 6 LEU A 161 ARG A 175 1 15 HELIX 7 7 GLY A 217 ALA A 230 1 14 HELIX 8 8 THR A 240 GLY A 246 1 7 HELIX 9 9 GLY A 273 ALA A 289 1 17 HELIX 10 10 SER B 31 LEU B 36 1 6 HELIX 11 11 ASP B 53 LEU B 68 1 16 HELIX 12 12 SER B 75 LYS B 88 1 14 HELIX 13 13 ASP B 115 GLU B 117 5 3 HELIX 14 14 ALA B 158 CYS B 160 5 3 HELIX 15 15 LEU B 161 ARG B 175 1 15 HELIX 16 16 GLY B 217 ALA B 230 1 14 HELIX 17 17 THR B 240 GLY B 246 1 7 HELIX 18 18 GLY B 273 GLU B 291 1 19 SHEET 1 A 5 GLU A 18 ALA A 21 0 SHEET 2 A 5 THR A 11 VAL A 15 -1 N THR A 13 O LEU A 20 SHEET 3 A 5 THR A 119 GLU A 127 -1 O LEU A 125 N TRP A 12 SHEET 4 A 5 ILE A 96 GLY A 104 -1 N TYR A 97 O PHE A 126 SHEET 5 A 5 THR A 39 PHE A 41 -1 N VAL A 40 O TYR A 102 SHEET 1 B 5 GLU A 18 ALA A 21 0 SHEET 2 B 5 THR A 11 VAL A 15 -1 N THR A 13 O LEU A 20 SHEET 3 B 5 THR A 119 GLU A 127 -1 O LEU A 125 N TRP A 12 SHEET 4 B 5 ILE A 96 GLY A 104 -1 N TYR A 97 O PHE A 126 SHEET 5 B 5 ALA A 44 TRP A 46 -1 N ALA A 44 O VAL A 98 SHEET 1 C 8 ILE A 189 THR A 192 0 SHEET 2 C 8 ASN A 179 ARG A 183 -1 N VAL A 182 O GLU A 191 SHEET 3 C 8 SER A 137 ARG A 145 1 N THR A 140 O LEU A 181 SHEET 4 C 8 LYS A 258 LEU A 265 1 O ARG A 264 N LEU A 139 SHEET 5 C 8 GLU A 249 GLY A 254 -1 N THR A 252 O LEU A 260 SHEET 6 C 8 SER A 195 LYS A 201 -1 N VAL A 200 O GLU A 249 SHEET 7 C 8 VAL A 204 PRO A 208 -1 O PHE A 206 N MSE A 199 SHEET 8 C 8 VAL A 234 THR A 237 1 O ILE A 235 N VAL A 205 SHEET 1 D 5 ILE A 189 THR A 192 0 SHEET 2 D 5 ASN A 179 ARG A 183 -1 N VAL A 182 O GLU A 191 SHEET 3 D 5 SER A 137 ARG A 145 1 N THR A 140 O LEU A 181 SHEET 4 D 5 LYS A 258 LEU A 265 1 O ARG A 264 N LEU A 139 SHEET 5 D 5 ARG A 268 GLU A 269 -1 O ARG A 268 N LEU A 265 SHEET 1 E 5 GLU B 18 ALA B 21 0 SHEET 2 E 5 THR B 11 VAL B 15 -1 N THR B 13 O LEU B 20 SHEET 3 E 5 THR B 119 GLU B 127 -1 O LEU B 123 N PHE B 14 SHEET 4 E 5 ILE B 96 GLY B 104 -1 N TYR B 97 O PHE B 126 SHEET 5 E 5 THR B 39 PHE B 41 -1 N VAL B 40 O TYR B 102 SHEET 1 F 5 GLU B 18 ALA B 21 0 SHEET 2 F 5 THR B 11 VAL B 15 -1 N THR B 13 O LEU B 20 SHEET 3 F 5 THR B 119 GLU B 127 -1 O LEU B 123 N PHE B 14 SHEET 4 F 5 ILE B 96 GLY B 104 -1 N TYR B 97 O PHE B 126 SHEET 5 F 5 ALA B 44 TRP B 46 -1 N ALA B 44 O VAL B 98 SHEET 1 G 5 ILE B 189 THR B 192 0 SHEET 2 G 5 ASN B 179 ARG B 183 -1 N VAL B 182 O ALA B 190 SHEET 3 G 5 SER B 138 ARG B 145 1 N THR B 140 O LEU B 181 SHEET 4 G 5 ARG B 264 LEU B 265 1 O ARG B 264 N LEU B 139 SHEET 5 G 5 ARG B 268 GLU B 269 -1 O ARG B 268 N LEU B 265 SHEET 1 H 5 VAL B 234 THR B 237 0 SHEET 2 H 5 VAL B 204 PRO B 208 1 N VAL B 205 O ILE B 235 SHEET 3 H 5 SER B 195 LYS B 201 -1 N MSE B 199 O PHE B 206 SHEET 4 H 5 GLU B 249 GLY B 254 -1 O GLU B 249 N VAL B 200 SHEET 5 H 5 LYS B 258 PRO B 261 -1 O LYS B 258 N GLY B 254 LINK C ALA A 33 N MSE A 34 1555 1555 1.32 LINK C MSE A 34 N TRP A 35 1555 1555 1.34 LINK C THR A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N SER A 75 1555 1555 1.32 LINK C PRO A 100 N MSE A 101 1555 1555 1.35 LINK C MSE A 101 N TYR A 102 1555 1555 1.33 LINK C CYS A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N PRO A 153 1555 1555 1.33 LINK C ALA A 156 N LLP A 157 1555 1555 1.34 LINK C LLP A 157 N ALA A 158 1555 1555 1.33 LINK C ASP A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N LEU A 186 1555 1555 1.33 LINK C PHE A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N VAL A 200 1555 1555 1.33 LINK C VAL A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N GLY A 225 1555 1555 1.33 LINK C THR A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N ALA A 242 1555 1555 1.34 LINK C TYR A 283 N MSE A 284 1555 1555 1.32 LINK C MSE A 284 N ASP A 285 1555 1555 1.35 LINK C ALA B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N TRP B 35 1555 1555 1.33 LINK C THR B 73 N MSE B 74 1555 1555 1.32 LINK C MSE B 74 N SER B 75 1555 1555 1.33 LINK C PRO B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N TYR B 102 1555 1555 1.34 LINK C CYS B 151 N MSE B 152 1555 1555 1.32 LINK C MSE B 152 N PRO B 153 1555 1555 1.34 LINK C ALA B 156 N LLP B 157 1555 1555 1.34 LINK C LLP B 157 N ALA B 158 1555 1555 1.32 LINK C ASP B 184 N MSE B 185 1555 1555 1.32 LINK C MSE B 185 N LEU B 186 1555 1555 1.34 LINK C PHE B 198 N MSE B 199 1555 1555 1.31 LINK C MSE B 199 N VAL B 200 1555 1555 1.32 LINK C VAL B 223 N MSE B 224 1555 1555 1.32 LINK C MSE B 224 N GLY B 225 1555 1555 1.34 LINK C THR B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N ALA B 242 1555 1555 1.34 LINK C TYR B 283 N MSE B 284 1555 1555 1.33 LINK C MSE B 284 N ASP B 285 1555 1555 1.34 CRYST1 98.799 76.006 93.669 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010676 0.00000