HEADER IMMUNE SYSTEM 29-MAR-13 4JY5 TITLE CRYSTAL STRUCTURE OF HUMAN FAB PGT122, A BROADLY REACTIVE AND POTENT TITLE 2 HIV-1 NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGT122 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PGT122 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS BROADLY NEUTRALIZING ANTIBODY AGAINST HIV-1, HIV-1 ENV GP120 SUBUNIT, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-P.JULIEN,D.C.DIWANJI,D.R.BURTON,I.A.WILSON REVDAT 4 20-SEP-23 4JY5 1 REMARK REVDAT 3 05-FEB-14 4JY5 1 JRNL REVDAT 2 15-MAY-13 4JY5 1 JRNL REVDAT 1 08-MAY-13 4JY5 0 JRNL AUTH J.P.JULIEN,D.SOK,R.KHAYAT,J.H.LEE,K.J.DOORES,L.M.WALKER, JRNL AUTH 2 A.RAMOS,D.C.DIWANJI,R.PEJCHAL,A.CUPO,U.KATPALLY, JRNL AUTH 3 R.S.DEPETRIS,R.L.STANFIELD,R.MCBRIDE,A.J.MAROZSAN, JRNL AUTH 4 J.C.PAULSON,R.W.SANDERS,J.P.MOORE,D.R.BURTON,P.POIGNARD, JRNL AUTH 5 A.B.WARD,I.A.WILSON JRNL TITL BROADLY NEUTRALIZING ANTIBODY PGT121 ALLOSTERICALLY JRNL TITL 2 MODULATES CD4 BINDING VIA RECOGNITION OF THE HIV-1 GP120 V3 JRNL TITL 3 BASE AND MULTIPLE SURROUNDING GLYCANS. JRNL REF PLOS PATHOG. V. 9 03342 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23658524 JRNL DOI 10.1371/JOURNAL.PPAT.1003342 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 38556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3410 - 5.1805 0.97 2708 139 0.2120 0.2670 REMARK 3 2 5.1805 - 4.1134 0.98 2716 153 0.1646 0.1710 REMARK 3 3 4.1134 - 3.5939 0.94 2682 134 0.1613 0.2306 REMARK 3 4 3.5939 - 3.2655 0.98 2699 139 0.1735 0.2115 REMARK 3 5 3.2655 - 3.0316 0.98 2719 164 0.1820 0.2137 REMARK 3 6 3.0316 - 2.8529 0.97 2769 122 0.1826 0.2245 REMARK 3 7 2.8529 - 2.7100 0.92 2567 130 0.1838 0.2141 REMARK 3 8 2.7100 - 2.5921 0.97 2743 127 0.1949 0.2925 REMARK 3 9 2.5921 - 2.4923 0.97 2663 136 0.1947 0.2792 REMARK 3 10 2.4923 - 2.4063 0.97 2742 165 0.1974 0.2161 REMARK 3 11 2.4063 - 2.3311 0.97 2689 133 0.2025 0.2580 REMARK 3 12 2.3311 - 2.2645 0.97 2712 153 0.2107 0.2898 REMARK 3 13 2.2645 - 2.2049 0.97 2667 139 0.1981 0.2468 REMARK 3 14 2.2049 - 2.1511 0.89 2536 142 0.1984 0.2262 REMARK 3 15 2.1511 - 2.1022 0.95 2616 139 0.1973 0.2475 REMARK 3 16 2.1022 - 2.0575 0.94 2663 132 0.1962 0.2677 REMARK 3 17 2.0575 - 2.0163 0.97 2716 150 0.2132 0.2502 REMARK 3 18 2.0163 - 1.9783 0.94 2596 151 0.2205 0.2692 REMARK 3 19 1.9783 - 1.9429 0.95 2674 141 0.2349 0.2586 REMARK 3 20 1.9429 - 1.9100 0.97 2665 151 0.2417 0.2943 REMARK 3 21 1.9100 - 1.8792 0.94 2691 115 0.2478 0.3032 REMARK 3 22 1.8792 - 1.8503 0.97 2713 158 0.2511 0.3021 REMARK 3 23 1.8503 - 1.8231 0.96 2690 148 0.2799 0.2853 REMARK 3 24 1.8231 - 1.7974 0.89 2520 117 0.2984 0.3489 REMARK 3 25 1.7974 - 1.7731 0.93 2623 157 0.3284 0.3782 REMARK 3 26 1.7731 - 1.7500 0.95 2625 126 0.3583 0.3933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 46.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78890 REMARK 3 B22 (A**2) : -2.71810 REMARK 3 B33 (A**2) : 0.92920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.11840 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3348 REMARK 3 ANGLE : 1.171 4565 REMARK 3 CHIRALITY : 0.079 519 REMARK 3 PLANARITY : 0.005 576 REMARK 3 DIHEDRAL : 14.796 1174 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.6247 11.2911 -5.0793 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.0975 REMARK 3 T33: 0.1168 T12: 0.0141 REMARK 3 T13: -0.0100 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.7032 L22: 0.5903 REMARK 3 L33: 0.7119 L12: 0.3887 REMARK 3 L13: -0.2142 L23: -0.4882 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.1139 S13: -0.0227 REMARK 3 S21: 0.0907 S22: -0.0969 S23: -0.1055 REMARK 3 S31: -0.0467 S32: 0.1338 S33: 0.0723 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS, PH 10.5, 0.2 M SODIUM REMARK 280 CHLORIDE, 20% W/V PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 105.17000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 105.17000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO L 110 REMARK 465 LYS L 111 REMARK 465 GLN L 168 REMARK 465 SER L 169 REMARK 465 ASN L 170 REMARK 465 ASN L 171 REMARK 465 LYS L 172 REMARK 465 THR L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 LYS H 127 REMARK 465 SER H 128 REMARK 465 THR H 129 REMARK 465 SER H 130 REMARK 465 SER H 186 REMARK 465 LEU H 187 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 435 O HOH L 456 2.08 REMARK 500 O ALA H 156 O HOH H 529 2.16 REMARK 500 O HOH L 463 O HOH L 469 2.18 REMARK 500 O HOH H 548 O HOH H 549 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 136 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 28 -51.58 -120.50 REMARK 500 ASN L 51 -49.08 73.02 REMARK 500 ASN L 52 23.74 -148.68 REMARK 500 SER L 67A -102.00 -126.00 REMARK 500 ASP L 152 -110.60 52.90 REMARK 500 SER H 15 -13.19 85.61 REMARK 500 TYR H 100B -164.54 -116.37 REMARK 500 SER H 125 -31.95 -148.42 REMARK 500 LEU H 136 135.31 -173.08 REMARK 500 THR H 189 -106.39 -71.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY L 67 SER L 67A -150.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JY4 RELATED DB: PDB REMARK 900 RELATED ID: 4JY6 RELATED DB: PDB DBREF 4JY5 L 8 213 PDB 4JY5 4JY5 8 213 DBREF 4JY5 H 1 214 PDB 4JY5 4JY5 1 214 SEQRES 1 L 211 THR PHE VAL SER VAL ALA PRO GLY GLN THR ALA ARG ILE SEQRES 2 L 211 THR CYS GLY GLU GLU SER LEU GLY SER ARG SER VAL ILE SEQRES 3 L 211 TRP TYR GLN GLN ARG PRO GLY GLN ALA PRO SER LEU ILE SEQRES 4 L 211 ILE TYR ASN ASN ASN ASP ARG PRO SER GLY ILE PRO ASP SEQRES 5 L 211 ARG PHE SER GLY SER PRO GLY SER THR PHE GLY THR THR SEQRES 6 L 211 ALA THR LEU THR ILE THR SER VAL GLU ALA GLY ASP GLU SEQRES 7 L 211 ALA ASP TYR TYR CYS HIS ILE TRP ASP SER ARG ARG PRO SEQRES 8 L 211 THR ASN TRP VAL PHE GLY GLU GLY THR THR LEU ILE VAL SEQRES 9 L 211 LEU SER GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE SEQRES 10 L 211 PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR SEQRES 11 L 211 LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL SEQRES 12 L 211 THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA SEQRES 13 L 211 GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN SEQRES 14 L 211 LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU SEQRES 15 L 211 GLN TRP LYS SER HIS LYS SER TYR SER CYS GLN VAL THR SEQRES 16 L 211 HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR SEQRES 17 L 211 GLU CYS SER SEQRES 1 H 235 GLN VAL HIS LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 235 PRO SER GLU THR LEU SER LEU THR CYS ASN VAL SER GLY SEQRES 3 H 235 THR LEU VAL ARG ASP ASN TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 235 PRO LEU GLY LYS GLN PRO GLU TRP ILE GLY TYR VAL HIS SEQRES 5 H 235 ASP SER GLY ASP THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 H 235 ARG VAL HIS LEU SER LEU ASP LYS SER LYS ASN LEU VAL SEQRES 7 H 235 SER LEU ARG LEU THR GLY VAL THR ALA ALA ASP SER ALA SEQRES 8 H 235 ILE TYR TYR CYS ALA THR THR LYS HIS GLY ARG ARG ILE SEQRES 9 H 235 TYR GLY VAL VAL ALA PHE LYS GLU TRP PHE THR TYR PHE SEQRES 10 H 235 TYR MET ASP VAL TRP GLY LYS GLY THR SER VAL THR VAL SEQRES 11 H 235 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 235 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 235 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 235 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 235 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 235 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 235 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 235 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 19 H 235 CYS HET GOL L 301 6 HET GOL H 301 6 HET GOL H 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *248(H2 O) HELIX 1 1 GLU L 79 GLU L 83 5 5 HELIX 2 2 SER L 122 ALA L 128 1 7 HELIX 3 3 THR L 182 HIS L 189 1 8 HELIX 4 4 LEU H 28 ASN H 32 5 5 HELIX 5 5 PRO H 61 LYS H 64 5 4 HELIX 6 6 THR H 83 SER H 87 5 5 HELIX 7 7 GLY H 100C TRP H 100J 5 8 HELIX 8 8 SER H 154 ALA H 156 5 3 HELIX 9 9 LYS H 199 ASN H 202 5 4 SHEET 1 A 5 PHE L 9 VAL L 13 0 SHEET 2 A 5 THR L 102 VAL L 106 1 O ILE L 105 N VAL L 11 SHEET 3 A 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 A 5 ARG L 31 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 A 5 SER L 45 ILE L 48 -1 O ILE L 47 N TRP L 35 SHEET 1 B 3 ALA L 19 CYS L 23 0 SHEET 2 B 3 ALA L 71 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 B 3 PHE L 62 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 C 4 SER L 115 PHE L 119 0 SHEET 2 C 4 ALA L 131 SER L 138 -1 O LEU L 136 N THR L 117 SHEET 3 C 4 ALA L 174 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 C 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 D 4 SER L 154 PRO L 155 0 SHEET 2 D 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 D 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 D 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 E 4 HIS H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 O ASN H 23 N GLN H 5 SHEET 3 E 4 LEU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 E 4 VAL H 67 ASP H 72 -1 N ASP H 72 O LEU H 77 SHEET 1 F 6 LEU H 11 VAL H 12 0 SHEET 2 F 6 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 F 6 ALA H 88 ARG H 100 -1 N TYR H 90 O THR H 105 SHEET 4 F 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 F 6 GLU H 46 VAL H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 F 6 ASN H 58 TYR H 59 -1 O ASN H 58 N TYR H 50 SHEET 1 G 4 LEU H 11 VAL H 12 0 SHEET 2 G 4 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 G 4 ALA H 88 ARG H 100 -1 N TYR H 90 O THR H 105 SHEET 4 G 4 PHE H 100K TRP H 101 -1 O TYR H 100O N LYS H 96 SHEET 1 H 4 SER H 118 LEU H 122 0 SHEET 2 H 4 THR H 133 TYR H 143 -1 O LYS H 141 N SER H 118 SHEET 3 H 4 TYR H 174 PRO H 183 -1 O LEU H 176 N VAL H 140 SHEET 4 H 4 VAL H 161 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 I 4 SER H 118 LEU H 122 0 SHEET 2 I 4 THR H 133 TYR H 143 -1 O LYS H 141 N SER H 118 SHEET 3 I 4 TYR H 174 PRO H 183 -1 O LEU H 176 N VAL H 140 SHEET 4 I 4 VAL H 167 LEU H 168 -1 N VAL H 167 O SER H 175 SHEET 1 J 3 THR H 149 TRP H 152 0 SHEET 2 J 3 ILE H 193 HIS H 198 -1 O ASN H 195 N SER H 151 SHEET 3 J 3 THR H 203 ARG H 208 -1 O VAL H 205 N VAL H 196 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 138 CYS H 194 1555 1555 2.03 CISPEP 1 TYR L 141 PRO L 142 0 -4.15 CISPEP 2 PHE H 144 PRO H 145 0 -6.06 CISPEP 3 GLU H 146 PRO H 147 0 1.01 SITE 1 AC1 6 THR L 95B ASN L 95C TRP L 96 VAL L 97 SITE 2 AC1 6 HOH L 415 HOH L 439 SITE 1 AC2 7 LEU H 41 ALA H 88 SER H 106 VAL H 107 SITE 2 AC2 7 THR H 108 HOH H 480 HOH H 541 SITE 1 AC3 6 PRO H 183 SER H 184 SER H 185 GLY H 188 SITE 2 AC3 6 THR H 189 TYR H 192 CRYST1 210.340 42.040 45.050 90.00 100.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004754 0.000000 0.000866 0.00000 SCALE2 0.000000 0.023787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022562 0.00000