HEADER TRANSFERASE 02-APR-13 4JZ7 TITLE CARBAMATE KINASE FROM GIARDIA LAMBLIA BOUND TO AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAMATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA LAMBLIA; SOURCE 3 ORGANISM_TAXID: 184922; SOURCE 4 STRAIN: ATCC 50803 / WB CLONE C6; SOURCE 5 GENE: GL50803_16453; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-HISMBP KEYWDS MODIFIED ROSSMANN FOLD, ATP CARBAMATE PHOSPHOTRANSFERASE, ADP, MG2+, KEYWDS 2 CARBAMOYL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.LIM,O.HERZBERG REVDAT 2 20-SEP-23 4JZ7 1 REMARK SEQADV REVDAT 1 05-JUN-13 4JZ7 0 JRNL AUTH K.LIM,L.KULAKOVA,A.GALKIN,O.HERZBERG JRNL TITL CRYSTAL STRUCTURES OF CARBAMATE KINASE FROM GIARDIA LAMBLIA JRNL TITL 2 BOUND WITH CITRIC ACID AND AMP-PNP. JRNL REF PLOS ONE V. 8 64004 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23700444 JRNL DOI 10.1371/JOURNAL.PONE.0064004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.GALKIN,L.KULAKOVA,R.WU,T.E.NASH,D.DUNAWAY-MARIANO, REMARK 1 AUTH 2 O.HERZBERG REMARK 1 TITL X-RAY STRUCTURE AND CHARACTERIZATION OF CARBAMATE KINASE REMARK 1 TITL 2 FROM THE HUMAN PARASITE GIARDIA LAMBLIA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 386 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20383005 REMARK 1 DOI 10.1107/S1744309110004665 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.7300 - 2.6000 0.99 0 226 0.2600 0.3320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.200 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3KZF AND 2WE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM CITRATE DIBASIC, PH REMARK 280 5.0, 21% PEG 3350, CRYSTAL SOAKED IN 50MM AMP-PNP FOR 4 HOURS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 VAL A 133 REMARK 465 GLY A 134 REMARK 465 ARG A 135 REMARK 465 PHE A 136 REMARK 465 TYR A 137 REMARK 465 THR A 138 REMARK 465 GLU A 139 REMARK 465 GLN A 140 REMARK 465 GLU A 141 REMARK 465 ALA A 142 REMARK 465 LYS A 143 REMARK 465 ASP A 144 REMARK 465 LEU A 145 REMARK 465 MET A 146 REMARK 465 ALA A 147 REMARK 465 ALA A 148 REMARK 465 ASN A 149 REMARK 465 PRO A 150 REMARK 465 GLY A 151 REMARK 465 LYS A 152 REMARK 465 ILE A 153 REMARK 465 LEU A 154 REMARK 465 ARG A 155 REMARK 465 GLU A 156 REMARK 465 ASP A 157 REMARK 465 ALA A 158 REMARK 465 GLY A 159 REMARK 465 ARG A 160 REMARK 465 GLY A 161 REMARK 465 TRP A 162 REMARK 465 ARG A 163 REMARK 465 GLY B 0 REMARK 465 VAL B 133 REMARK 465 GLY B 134 REMARK 465 ARG B 135 REMARK 465 PHE B 136 REMARK 465 TYR B 137 REMARK 465 THR B 138 REMARK 465 GLU B 139 REMARK 465 GLN B 140 REMARK 465 GLU B 141 REMARK 465 ALA B 142 REMARK 465 LYS B 143 REMARK 465 ASP B 144 REMARK 465 LEU B 145 REMARK 465 MET B 146 REMARK 465 ALA B 147 REMARK 465 ALA B 148 REMARK 465 ASN B 149 REMARK 465 PRO B 150 REMARK 465 GLY B 151 REMARK 465 LYS B 152 REMARK 465 ILE B 153 REMARK 465 LEU B 154 REMARK 465 ARG B 155 REMARK 465 GLU B 156 REMARK 465 ASP B 157 REMARK 465 ALA B 158 REMARK 465 GLY B 159 REMARK 465 ARG B 160 REMARK 465 GLY B 161 REMARK 465 TRP B 162 REMARK 465 ARG B 163 REMARK 465 GLY C 0 REMARK 465 GLY D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS B 131 O VAL B 166 2.17 REMARK 500 OH TYR B 40 OE2 GLU B 106 2.17 REMARK 500 OE2 GLU B 75 OE2 GLU D 141 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 129 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 16 -30.06 -137.59 REMARK 500 SER A 73 130.60 -178.12 REMARK 500 ASN A 109 60.65 -155.28 REMARK 500 LYS A 122 28.33 -75.45 REMARK 500 PRO A 129 -178.76 -46.08 REMARK 500 THR A 130 -131.82 -143.34 REMARK 500 VAL A 165 116.28 -161.29 REMARK 500 ASN A 204 60.17 26.34 REMARK 500 LYS A 246 78.91 45.78 REMARK 500 PRO A 248 -74.44 -62.89 REMARK 500 ASP A 249 22.37 -69.80 REMARK 500 GLU A 254 -123.87 -112.07 REMARK 500 ALA A 272 -6.40 -59.32 REMARK 500 SER A 274 -84.57 -124.04 REMARK 500 THR A 300 64.56 -119.97 REMARK 500 ASN A 306 5.22 -69.26 REMARK 500 CYS A 309 179.42 161.57 REMARK 500 ILE A 314 -168.92 -113.13 REMARK 500 ASN B 55 -4.85 -145.52 REMARK 500 ALA B 70 4.85 -48.29 REMARK 500 ASN B 109 65.13 -151.27 REMARK 500 ASN B 128 87.21 -161.61 REMARK 500 THR B 130 30.54 -167.81 REMARK 500 SER B 168 79.30 -153.55 REMARK 500 ASP B 211 64.34 -102.82 REMARK 500 THR B 236 -152.78 -134.43 REMARK 500 ASP B 249 50.07 -103.32 REMARK 500 GLU B 254 -101.48 -116.12 REMARK 500 SER B 274 -75.41 -132.42 REMARK 500 ALA C 70 -5.73 -50.33 REMARK 500 SER C 73 134.66 -175.83 REMARK 500 ASN C 187 39.66 70.12 REMARK 500 ASP C 249 39.02 -84.20 REMARK 500 GLU C 254 -131.32 -103.30 REMARK 500 SER C 274 -89.66 -108.74 REMARK 500 CYS C 309 178.14 168.57 REMARK 500 ALA D 70 22.36 -55.02 REMARK 500 PRO D 150 104.12 -58.58 REMARK 500 ARG D 160 28.75 -59.33 REMARK 500 SER D 168 73.32 -117.54 REMARK 500 THR D 193 18.34 57.74 REMARK 500 THR D 236 -150.59 -129.39 REMARK 500 LYS D 246 -6.99 56.63 REMARK 500 PRO D 248 31.55 -63.03 REMARK 500 ASP D 249 35.19 -144.77 REMARK 500 GLU D 254 -112.89 -103.52 REMARK 500 ALA D 272 -2.51 -58.69 REMARK 500 SER D 274 -89.55 -107.86 REMARK 500 CYS D 309 -167.09 -177.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 315 ASP A 316 144.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KZF RELATED DB: PDB REMARK 900 CARBAMATE KINASE FROM GIARDIA LAMBLIA AT 3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 4JZ8 RELATED DB: PDB REMARK 900 RELATED ID: 4JZ9 RELATED DB: PDB DBREF 4JZ7 A 1 316 UNP A8BB85 A8BB85_GIAIC 1 316 DBREF 4JZ7 B 1 316 UNP A8BB85 A8BB85_GIAIC 1 316 DBREF 4JZ7 C 1 316 UNP A8BB85 A8BB85_GIAIC 1 316 DBREF 4JZ7 D 1 316 UNP A8BB85 A8BB85_GIAIC 1 316 SEQADV 4JZ7 GLY A 0 UNP A8BB85 INSERTION SEQADV 4JZ7 GLY B 0 UNP A8BB85 INSERTION SEQADV 4JZ7 GLY C 0 UNP A8BB85 INSERTION SEQADV 4JZ7 GLY D 0 UNP A8BB85 INSERTION SEQRES 1 A 317 GLY MET SER ALA GLY LYS THR VAL VAL ILE ALA LEU GLY SEQRES 2 A 317 GLY ASN ALA MET LEU GLN ALA LYS GLU LYS GLY ASP TYR SEQRES 3 A 317 ASP THR GLN ARG LYS ASN VAL GLU ILE ALA ALA SER GLU SEQRES 4 A 317 ILE TYR LYS ILE HIS LYS ALA GLY TYR LYS VAL VAL LEU SEQRES 5 A 317 THR SER GLY ASN GLY PRO GLN VAL GLY ALA ILE LYS LEU SEQRES 6 A 317 GLN ASN GLN ALA ALA ALA GLY VAL SER PRO GLU MET PRO SEQRES 7 A 317 LEU HIS VAL CYS GLY ALA MET SER GLN GLY PHE ILE GLY SEQRES 8 A 317 TYR MET MET SER GLN ALA MET ASP ASN VAL PHE CYS ALA SEQRES 9 A 317 ASN ASN GLU PRO ALA ASN CYS VAL THR CYS VAL THR GLN SEQRES 10 A 317 THR LEU VAL ASP PRO LYS ASP GLN ALA PHE THR ASN PRO SEQRES 11 A 317 THR LYS PRO VAL GLY ARG PHE TYR THR GLU GLN GLU ALA SEQRES 12 A 317 LYS ASP LEU MET ALA ALA ASN PRO GLY LYS ILE LEU ARG SEQRES 13 A 317 GLU ASP ALA GLY ARG GLY TRP ARG VAL VAL VAL PRO SER SEQRES 14 A 317 PRO ARG PRO LEU GLU ILE VAL GLU TYR GLY VAL ILE LYS SEQRES 15 A 317 THR LEU ILE ASP ASN ASN VAL LEU VAL ILE CYS THR ASN SEQRES 16 A 317 GLY GLY GLY ILE PRO CYS LYS ARG GLU ASN LYS VAL ILE SEQRES 17 A 317 SER GLY VAL ASP ALA VAL ILE ASP LYS ASP LEU ALA THR SEQRES 18 A 317 SER LEU LEU ALA LYS THR LEU ASN SER ASP TYR LEU MET SEQRES 19 A 317 ILE LEU THR ASP VAL LEU ASN ALA CYS ILE ASN TYR LYS SEQRES 20 A 317 LYS PRO ASP GLU ARG LYS LEU GLU GLU ILE LYS LEU SER SEQRES 21 A 317 GLU ILE LEU ALA LEU GLU LYS ASP GLY HIS PHE ALA ALA SEQRES 22 A 317 GLY SER MET GLY PRO LYS VAL ARG ALA ALA ILE GLU PHE SEQRES 23 A 317 THR GLN ALA THR GLY LYS MET SER ILE ILE THR SER LEU SEQRES 24 A 317 SER THR ALA VAL ASP ALA LEU ASN GLY LYS CYS GLY THR SEQRES 25 A 317 ARG ILE ILE LYS ASP SEQRES 1 B 317 GLY MET SER ALA GLY LYS THR VAL VAL ILE ALA LEU GLY SEQRES 2 B 317 GLY ASN ALA MET LEU GLN ALA LYS GLU LYS GLY ASP TYR SEQRES 3 B 317 ASP THR GLN ARG LYS ASN VAL GLU ILE ALA ALA SER GLU SEQRES 4 B 317 ILE TYR LYS ILE HIS LYS ALA GLY TYR LYS VAL VAL LEU SEQRES 5 B 317 THR SER GLY ASN GLY PRO GLN VAL GLY ALA ILE LYS LEU SEQRES 6 B 317 GLN ASN GLN ALA ALA ALA GLY VAL SER PRO GLU MET PRO SEQRES 7 B 317 LEU HIS VAL CYS GLY ALA MET SER GLN GLY PHE ILE GLY SEQRES 8 B 317 TYR MET MET SER GLN ALA MET ASP ASN VAL PHE CYS ALA SEQRES 9 B 317 ASN ASN GLU PRO ALA ASN CYS VAL THR CYS VAL THR GLN SEQRES 10 B 317 THR LEU VAL ASP PRO LYS ASP GLN ALA PHE THR ASN PRO SEQRES 11 B 317 THR LYS PRO VAL GLY ARG PHE TYR THR GLU GLN GLU ALA SEQRES 12 B 317 LYS ASP LEU MET ALA ALA ASN PRO GLY LYS ILE LEU ARG SEQRES 13 B 317 GLU ASP ALA GLY ARG GLY TRP ARG VAL VAL VAL PRO SER SEQRES 14 B 317 PRO ARG PRO LEU GLU ILE VAL GLU TYR GLY VAL ILE LYS SEQRES 15 B 317 THR LEU ILE ASP ASN ASN VAL LEU VAL ILE CYS THR ASN SEQRES 16 B 317 GLY GLY GLY ILE PRO CYS LYS ARG GLU ASN LYS VAL ILE SEQRES 17 B 317 SER GLY VAL ASP ALA VAL ILE ASP LYS ASP LEU ALA THR SEQRES 18 B 317 SER LEU LEU ALA LYS THR LEU ASN SER ASP TYR LEU MET SEQRES 19 B 317 ILE LEU THR ASP VAL LEU ASN ALA CYS ILE ASN TYR LYS SEQRES 20 B 317 LYS PRO ASP GLU ARG LYS LEU GLU GLU ILE LYS LEU SER SEQRES 21 B 317 GLU ILE LEU ALA LEU GLU LYS ASP GLY HIS PHE ALA ALA SEQRES 22 B 317 GLY SER MET GLY PRO LYS VAL ARG ALA ALA ILE GLU PHE SEQRES 23 B 317 THR GLN ALA THR GLY LYS MET SER ILE ILE THR SER LEU SEQRES 24 B 317 SER THR ALA VAL ASP ALA LEU ASN GLY LYS CYS GLY THR SEQRES 25 B 317 ARG ILE ILE LYS ASP SEQRES 1 C 317 GLY MET SER ALA GLY LYS THR VAL VAL ILE ALA LEU GLY SEQRES 2 C 317 GLY ASN ALA MET LEU GLN ALA LYS GLU LYS GLY ASP TYR SEQRES 3 C 317 ASP THR GLN ARG LYS ASN VAL GLU ILE ALA ALA SER GLU SEQRES 4 C 317 ILE TYR LYS ILE HIS LYS ALA GLY TYR LYS VAL VAL LEU SEQRES 5 C 317 THR SER GLY ASN GLY PRO GLN VAL GLY ALA ILE LYS LEU SEQRES 6 C 317 GLN ASN GLN ALA ALA ALA GLY VAL SER PRO GLU MET PRO SEQRES 7 C 317 LEU HIS VAL CYS GLY ALA MET SER GLN GLY PHE ILE GLY SEQRES 8 C 317 TYR MET MET SER GLN ALA MET ASP ASN VAL PHE CYS ALA SEQRES 9 C 317 ASN ASN GLU PRO ALA ASN CYS VAL THR CYS VAL THR GLN SEQRES 10 C 317 THR LEU VAL ASP PRO LYS ASP GLN ALA PHE THR ASN PRO SEQRES 11 C 317 THR LYS PRO VAL GLY ARG PHE TYR THR GLU GLN GLU ALA SEQRES 12 C 317 LYS ASP LEU MET ALA ALA ASN PRO GLY LYS ILE LEU ARG SEQRES 13 C 317 GLU ASP ALA GLY ARG GLY TRP ARG VAL VAL VAL PRO SER SEQRES 14 C 317 PRO ARG PRO LEU GLU ILE VAL GLU TYR GLY VAL ILE LYS SEQRES 15 C 317 THR LEU ILE ASP ASN ASN VAL LEU VAL ILE CYS THR ASN SEQRES 16 C 317 GLY GLY GLY ILE PRO CYS LYS ARG GLU ASN LYS VAL ILE SEQRES 17 C 317 SER GLY VAL ASP ALA VAL ILE ASP LYS ASP LEU ALA THR SEQRES 18 C 317 SER LEU LEU ALA LYS THR LEU ASN SER ASP TYR LEU MET SEQRES 19 C 317 ILE LEU THR ASP VAL LEU ASN ALA CYS ILE ASN TYR LYS SEQRES 20 C 317 LYS PRO ASP GLU ARG LYS LEU GLU GLU ILE LYS LEU SER SEQRES 21 C 317 GLU ILE LEU ALA LEU GLU LYS ASP GLY HIS PHE ALA ALA SEQRES 22 C 317 GLY SER MET GLY PRO LYS VAL ARG ALA ALA ILE GLU PHE SEQRES 23 C 317 THR GLN ALA THR GLY LYS MET SER ILE ILE THR SER LEU SEQRES 24 C 317 SER THR ALA VAL ASP ALA LEU ASN GLY LYS CYS GLY THR SEQRES 25 C 317 ARG ILE ILE LYS ASP SEQRES 1 D 317 GLY MET SER ALA GLY LYS THR VAL VAL ILE ALA LEU GLY SEQRES 2 D 317 GLY ASN ALA MET LEU GLN ALA LYS GLU LYS GLY ASP TYR SEQRES 3 D 317 ASP THR GLN ARG LYS ASN VAL GLU ILE ALA ALA SER GLU SEQRES 4 D 317 ILE TYR LYS ILE HIS LYS ALA GLY TYR LYS VAL VAL LEU SEQRES 5 D 317 THR SER GLY ASN GLY PRO GLN VAL GLY ALA ILE LYS LEU SEQRES 6 D 317 GLN ASN GLN ALA ALA ALA GLY VAL SER PRO GLU MET PRO SEQRES 7 D 317 LEU HIS VAL CYS GLY ALA MET SER GLN GLY PHE ILE GLY SEQRES 8 D 317 TYR MET MET SER GLN ALA MET ASP ASN VAL PHE CYS ALA SEQRES 9 D 317 ASN ASN GLU PRO ALA ASN CYS VAL THR CYS VAL THR GLN SEQRES 10 D 317 THR LEU VAL ASP PRO LYS ASP GLN ALA PHE THR ASN PRO SEQRES 11 D 317 THR LYS PRO VAL GLY ARG PHE TYR THR GLU GLN GLU ALA SEQRES 12 D 317 LYS ASP LEU MET ALA ALA ASN PRO GLY LYS ILE LEU ARG SEQRES 13 D 317 GLU ASP ALA GLY ARG GLY TRP ARG VAL VAL VAL PRO SER SEQRES 14 D 317 PRO ARG PRO LEU GLU ILE VAL GLU TYR GLY VAL ILE LYS SEQRES 15 D 317 THR LEU ILE ASP ASN ASN VAL LEU VAL ILE CYS THR ASN SEQRES 16 D 317 GLY GLY GLY ILE PRO CYS LYS ARG GLU ASN LYS VAL ILE SEQRES 17 D 317 SER GLY VAL ASP ALA VAL ILE ASP LYS ASP LEU ALA THR SEQRES 18 D 317 SER LEU LEU ALA LYS THR LEU ASN SER ASP TYR LEU MET SEQRES 19 D 317 ILE LEU THR ASP VAL LEU ASN ALA CYS ILE ASN TYR LYS SEQRES 20 D 317 LYS PRO ASP GLU ARG LYS LEU GLU GLU ILE LYS LEU SER SEQRES 21 D 317 GLU ILE LEU ALA LEU GLU LYS ASP GLY HIS PHE ALA ALA SEQRES 22 D 317 GLY SER MET GLY PRO LYS VAL ARG ALA ALA ILE GLU PHE SEQRES 23 D 317 THR GLN ALA THR GLY LYS MET SER ILE ILE THR SER LEU SEQRES 24 D 317 SER THR ALA VAL ASP ALA LEU ASN GLY LYS CYS GLY THR SEQRES 25 D 317 ARG ILE ILE LYS ASP HET ANP A1001 31 HET ANP B 401 31 HET ANP C 401 31 HET ANP D 401 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 5 ANP 4(C10 H17 N6 O12 P3) FORMUL 9 HOH *475(H2 O) HELIX 1 1 GLY A 12 MET A 16 5 5 HELIX 2 2 ASP A 24 ALA A 45 1 22 HELIX 3 3 ASN A 55 ALA A 68 1 14 HELIX 4 4 PRO A 77 ASN A 104 1 28 HELIX 5 5 ASP A 123 THR A 127 5 5 HELIX 6 6 GLU A 176 ASP A 185 1 10 HELIX 7 7 ASP A 215 LEU A 227 1 13 HELIX 8 8 LEU A 258 ASP A 267 1 10 HELIX 9 9 SER A 274 GLY A 290 1 17 HELIX 10 10 THR A 300 ASN A 306 1 7 HELIX 11 11 GLY B 12 MET B 16 5 5 HELIX 12 12 ASP B 24 GLY B 46 1 23 HELIX 13 13 ASN B 55 ALA B 69 1 15 HELIX 14 14 PRO B 77 ASN B 104 1 28 HELIX 15 15 ASP B 123 THR B 127 5 5 HELIX 16 16 GLU B 176 ASN B 186 1 11 HELIX 17 17 ASP B 215 LEU B 227 1 13 HELIX 18 18 LEU B 258 GLY B 268 1 11 HELIX 19 19 SER B 274 GLY B 290 1 17 HELIX 20 20 THR B 300 ASN B 306 1 7 HELIX 21 21 GLY C 12 MET C 16 5 5 HELIX 22 22 ASP C 24 ALA C 45 1 22 HELIX 23 23 ASN C 55 ALA C 68 1 14 HELIX 24 24 PRO C 77 ASN C 104 1 28 HELIX 25 25 ASP C 123 THR C 127 5 5 HELIX 26 26 GLU C 176 ASN C 186 1 11 HELIX 27 27 ASN C 194 GLY C 197 5 4 HELIX 28 28 ASP C 215 ASN C 228 1 14 HELIX 29 29 LEU C 258 GLU C 265 1 8 HELIX 30 30 SER C 274 GLY C 290 1 17 HELIX 31 31 THR C 300 ASN C 306 1 7 HELIX 32 32 GLY D 13 MET D 16 5 4 HELIX 33 33 ASP D 24 GLY D 46 1 23 HELIX 34 34 ASN D 55 ALA D 69 1 15 HELIX 35 35 PRO D 77 ASN D 104 1 28 HELIX 36 36 ASP D 123 THR D 127 5 5 HELIX 37 37 THR D 138 LYS D 143 1 6 HELIX 38 38 ASP D 144 ASN D 149 1 6 HELIX 39 39 GLU D 176 ASN D 186 1 11 HELIX 40 40 ASN D 194 GLY D 197 5 4 HELIX 41 41 ASP D 215 ASN D 228 1 14 HELIX 42 42 LEU D 258 ASP D 267 1 10 HELIX 43 43 SER D 274 GLY D 290 1 17 HELIX 44 44 THR D 300 ASN D 306 1 7 SHEET 1 A 8 CYS A 110 THR A 112 0 SHEET 2 A 8 LEU A 189 ILE A 191 1 O ILE A 191 N VAL A 111 SHEET 3 A 8 LYS A 48 THR A 52 1 N LEU A 51 O VAL A 190 SHEET 4 A 8 THR A 6 ALA A 10 1 N ILE A 9 O VAL A 50 SHEET 5 A 8 LEU A 232 THR A 236 1 O MET A 233 N VAL A 8 SHEET 6 A 8 SER A 293 SER A 297 1 O ILE A 294 N ILE A 234 SHEET 7 A 8 THR A 311 ILE A 314 -1 O THR A 311 N ILE A 295 SHEET 8 A 8 GLU A 255 LYS A 257 1 N ILE A 256 O ARG A 312 SHEET 1 B 4 PRO A 171 ILE A 174 0 SHEET 2 B 4 GLN A 116 VAL A 119 -1 N LEU A 118 O LEU A 172 SHEET 3 B 4 ILE A 198 GLU A 203 1 O CYS A 200 N VAL A 119 SHEET 4 B 4 VAL A 206 GLY A 209 -1 O VAL A 206 N GLU A 203 SHEET 1 C 2 CYS A 242 ILE A 243 0 SHEET 2 C 2 ARG A 251 LYS A 252 -1 O ARG A 251 N ILE A 243 SHEET 1 D 8 CYS B 110 THR B 112 0 SHEET 2 D 8 LEU B 189 ASN B 194 1 O ILE B 191 N VAL B 111 SHEET 3 D 8 LYS B 48 SER B 53 1 N LEU B 51 O VAL B 190 SHEET 4 D 8 THR B 6 ALA B 10 1 N ILE B 9 O THR B 52 SHEET 5 D 8 TYR B 231 THR B 236 1 O MET B 233 N ALA B 10 SHEET 6 D 8 MET B 292 SER B 297 1 O THR B 296 N THR B 236 SHEET 7 D 8 THR B 311 ILE B 314 -1 O THR B 311 N ILE B 295 SHEET 8 D 8 GLU B 255 LYS B 257 1 N ILE B 256 O ARG B 312 SHEET 1 E 4 GLU B 173 ILE B 174 0 SHEET 2 E 4 GLN B 116 LEU B 118 -1 N LEU B 118 O GLU B 173 SHEET 3 E 4 ILE B 198 GLU B 203 1 O CYS B 200 N THR B 117 SHEET 4 E 4 VAL B 206 GLY B 209 -1 O SER B 208 N LYS B 201 SHEET 1 F 2 CYS B 242 ILE B 243 0 SHEET 2 F 2 ARG B 251 LYS B 252 -1 O ARG B 251 N ILE B 243 SHEET 1 G 8 CYS C 110 CYS C 113 0 SHEET 2 G 8 LEU C 189 CYS C 192 1 O ILE C 191 N VAL C 111 SHEET 3 G 8 LYS C 48 THR C 52 1 N LEU C 51 O VAL C 190 SHEET 4 G 8 THR C 6 ALA C 10 1 N ILE C 9 O VAL C 50 SHEET 5 G 8 TYR C 231 THR C 236 1 O MET C 233 N VAL C 8 SHEET 6 G 8 MET C 292 SER C 297 1 O ILE C 294 N ILE C 234 SHEET 7 G 8 THR C 311 ILE C 314 -1 O THR C 311 N ILE C 295 SHEET 8 G 8 GLU C 255 LYS C 257 1 N ILE C 256 O ARG C 312 SHEET 1 H 4 PRO C 171 ILE C 174 0 SHEET 2 H 4 GLN C 116 VAL C 119 -1 N LEU C 118 O LEU C 172 SHEET 3 H 4 ILE C 198 GLU C 203 1 O CYS C 200 N VAL C 119 SHEET 4 H 4 VAL C 206 GLY C 209 -1 O VAL C 206 N GLU C 203 SHEET 1 I 3 PRO C 132 VAL C 133 0 SHEET 2 I 3 TRP C 162 VAL C 165 -1 O VAL C 164 N VAL C 133 SHEET 3 I 3 LEU C 154 GLU C 156 -1 N ARG C 155 O ARG C 163 SHEET 1 J 2 CYS C 242 ILE C 243 0 SHEET 2 J 2 ARG C 251 LYS C 252 -1 O ARG C 251 N ILE C 243 SHEET 1 K 8 CYS D 110 CYS D 113 0 SHEET 2 K 8 LEU D 189 CYS D 192 1 O ILE D 191 N VAL D 111 SHEET 3 K 8 LYS D 48 THR D 52 1 N LEU D 51 O VAL D 190 SHEET 4 K 8 THR D 6 LEU D 11 1 N VAL D 7 O LYS D 48 SHEET 5 K 8 TYR D 231 THR D 236 1 O MET D 233 N ALA D 10 SHEET 6 K 8 MET D 292 SER D 297 1 O ILE D 294 N LEU D 232 SHEET 7 K 8 THR D 311 ILE D 314 -1 O ILE D 313 N SER D 293 SHEET 8 K 8 GLU D 255 LYS D 257 1 N ILE D 256 O ARG D 312 SHEET 1 L 4 PRO D 171 ILE D 174 0 SHEET 2 L 4 GLN D 116 VAL D 119 -1 N LEU D 118 O LEU D 172 SHEET 3 L 4 ILE D 198 ARG D 202 1 O ILE D 198 N THR D 117 SHEET 4 L 4 ILE D 207 GLY D 209 -1 O SER D 208 N LYS D 201 SHEET 1 M 3 LYS D 131 TYR D 137 0 SHEET 2 M 3 TRP D 162 VAL D 166 -1 O TRP D 162 N TYR D 137 SHEET 3 M 3 LEU D 154 GLU D 156 -1 N ARG D 155 O ARG D 163 SHEET 1 N 2 CYS D 242 ILE D 243 0 SHEET 2 N 2 ARG D 251 LYS D 252 -1 O ARG D 251 N ILE D 243 SITE 1 AC1 21 GLY A 12 GLY A 13 LYS A 216 THR A 236 SITE 2 AC1 21 ASP A 237 CYS A 242 TYR A 245 HIS A 269 SITE 3 AC1 21 PHE A 270 ALA A 271 SER A 274 MET A 275 SITE 4 AC1 21 LYS A 278 HOH A1104 HOH A1128 HOH A1132 SITE 5 AC1 21 HOH A1155 HOH A1163 HOH A1183 HOH A1186 SITE 6 AC1 21 HOH A1199 SITE 1 AC2 15 GLY B 12 GLY B 13 LYS B 216 THR B 236 SITE 2 AC2 15 ASP B 237 VAL B 238 CYS B 242 HIS B 269 SITE 3 AC2 15 SER B 274 MET B 275 LYS B 278 HOH B 501 SITE 4 AC2 15 HOH B 521 HOH B 547 HOH B 549 SITE 1 AC3 14 GLY C 12 GLY C 13 LYS C 216 THR C 236 SITE 2 AC3 14 ASP C 237 CYS C 242 TYR C 245 HIS C 269 SITE 3 AC3 14 SER C 274 MET C 275 LYS C 278 HOH C 502 SITE 4 AC3 14 HOH C 512 HOH C 582 SITE 1 AC4 17 GLY D 12 GLY D 13 LYS D 216 THR D 236 SITE 2 AC4 17 ASP D 237 VAL D 238 CYS D 242 TYR D 245 SITE 3 AC4 17 SER D 274 MET D 275 LYS D 278 HOH D 514 SITE 4 AC4 17 HOH D 555 HOH D 581 HOH D 609 HOH D 610 SITE 5 AC4 17 HOH D 619 CRYST1 70.630 97.050 102.120 90.00 106.69 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014158 0.000000 0.004245 0.00000 SCALE2 0.000000 0.010304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010223 0.00000