HEADER TRANSFERASE 03-APR-13 4JZK TITLE CRYSTAL STRUCTURE OF ADENYLATE KINASE OF E. COLI WITH ADP/AMP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O104:H4; SOURCE 3 ORGANISM_TAXID: 1133853; SOURCE 4 STRAIN: 2009EL-2071; SOURCE 5 GENE: ADK, O3O_06175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, PHOSPHORYL TRANSFER REACTION, CONFORMATIONAL CHANGES OF KEYWDS 2 LIDS DOMAINS, ATP BINDING, AMP BINDING, PHOSPHORYL TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.CHO,R.AGAFONOV,D.KERN REVDAT 2 28-FEB-24 4JZK 1 REMARK REVDAT 1 30-APR-14 4JZK 0 JRNL AUTH Y.-J.CHO,R.AGAFONOV,D.KERN JRNL TITL CRYSTAL STRUCTURE OF E. COLI ADENYLATE KINASE WITH ADP AND JRNL TITL 2 AMP BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 56588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8862 - 3.5091 0.99 5968 333 0.1769 0.1984 REMARK 3 2 3.5091 - 2.7863 1.00 5778 284 0.1950 0.2245 REMARK 3 3 2.7863 - 2.4344 1.00 5730 312 0.2005 0.2394 REMARK 3 4 2.4344 - 2.2120 0.97 5503 345 0.2401 0.3026 REMARK 3 5 2.2120 - 2.0535 1.00 5719 273 0.2107 0.2453 REMARK 3 6 2.0535 - 1.9325 0.97 5536 273 0.2250 0.2821 REMARK 3 7 1.9325 - 1.8357 0.90 5145 260 0.3247 0.4005 REMARK 3 8 1.8357 - 1.7558 0.96 5470 305 0.2730 0.3108 REMARK 3 9 1.7558 - 1.6883 0.87 4910 249 0.2912 0.3418 REMARK 3 10 1.6883 - 1.6300 0.71 3965 230 0.3225 0.3483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 33.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40540 REMARK 3 B22 (A**2) : -1.86730 REMARK 3 B33 (A**2) : 5.27270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3468 REMARK 3 ANGLE : 1.181 4694 REMARK 3 CHIRALITY : 0.066 524 REMARK 3 PLANARITY : 0.005 602 REMARK 3 DIHEDRAL : 16.841 1344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8459 10.7113 -12.1189 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1284 REMARK 3 T33: 0.0676 T12: -0.0096 REMARK 3 T13: -0.0272 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 3.9049 L22: 0.6242 REMARK 3 L33: 0.7521 L12: -0.2689 REMARK 3 L13: 1.1432 L23: -0.5924 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: -0.1049 S13: 0.6657 REMARK 3 S21: -0.1001 S22: -0.0221 S23: -0.0864 REMARK 3 S31: -0.0456 S32: 0.1377 S33: -0.1072 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:110) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8571 5.2967 -16.1773 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1721 REMARK 3 T33: 0.0082 T12: -0.0114 REMARK 3 T13: -0.0355 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.1325 L22: 0.5982 REMARK 3 L33: 0.6407 L12: 0.1082 REMARK 3 L13: -1.0855 L23: -0.4735 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.2539 S13: 0.1722 REMARK 3 S21: -0.0123 S22: -0.1010 S23: -0.1577 REMARK 3 S31: -0.0951 S32: 0.1184 S33: 0.0481 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 111:168) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4422 8.5089 -28.2667 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1215 REMARK 3 T33: 0.0742 T12: -0.0067 REMARK 3 T13: -0.0387 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6941 L22: 1.0938 REMARK 3 L33: 0.6029 L12: -0.4993 REMARK 3 L13: 0.5427 L23: -0.8340 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: 0.0511 S13: 0.1009 REMARK 3 S21: -0.1075 S22: 0.0594 S23: 0.0307 REMARK 3 S31: -0.0137 S32: -0.0282 S33: 0.0405 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 169:214) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1095 0.6236 -8.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.1862 REMARK 3 T33: 0.0027 T12: -0.0226 REMARK 3 T13: -0.0040 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.1446 L22: 1.2417 REMARK 3 L33: 0.0163 L12: 0.6313 REMARK 3 L13: 0.1275 L23: -0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: -0.3538 S13: -0.0310 REMARK 3 S21: 0.0684 S22: -0.0679 S23: 0.0657 REMARK 3 S31: 0.0323 S32: -0.0172 S33: 0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:69) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4044 45.4252 -24.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.0434 REMARK 3 T33: 0.5777 T12: 0.0108 REMARK 3 T13: 0.0108 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6019 L22: 1.5245 REMARK 3 L33: 0.5298 L12: 0.2190 REMARK 3 L13: -0.5399 L23: -0.1636 REMARK 3 S TENSOR REMARK 3 S11: 0.2177 S12: -0.2897 S13: 0.4519 REMARK 3 S21: -0.0370 S22: -0.0573 S23: 1.0458 REMARK 3 S31: -0.1168 S32: -0.0573 S33: -0.1276 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 70:109) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1027 40.8542 -34.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.4088 T22: 0.1239 REMARK 3 T33: 0.8478 T12: -0.0248 REMARK 3 T13: -0.3241 T23: 0.1289 REMARK 3 L TENSOR REMARK 3 L11: 0.4930 L22: 0.6035 REMARK 3 L33: 0.7530 L12: 0.3735 REMARK 3 L13: -0.0886 L23: 0.1770 REMARK 3 S TENSOR REMARK 3 S11: -0.2931 S12: 0.3306 S13: 0.5085 REMARK 3 S21: -0.8039 S22: 0.1301 S23: 1.2972 REMARK 3 S31: -0.1353 S32: -0.1869 S33: 0.0868 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 110:158) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6996 51.2264 -18.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.1115 REMARK 3 T33: 0.2546 T12: -0.0388 REMARK 3 T13: 0.0213 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.6279 L22: 0.9182 REMARK 3 L33: 0.1432 L12: 0.2722 REMARK 3 L13: 0.3683 L23: 0.1988 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.2485 S13: -0.2676 REMARK 3 S21: -0.0014 S22: -0.0831 S23: -0.0087 REMARK 3 S31: 0.0888 S32: -0.0924 S33: 0.0019 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 159:214) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0698 35.9004 -28.4285 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.0519 REMARK 3 T33: 0.3554 T12: 0.0421 REMARK 3 T13: -0.0201 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.3388 L22: 2.5521 REMARK 3 L33: 0.9918 L12: 0.7585 REMARK 3 L13: -0.3154 L23: -0.4912 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: -0.0359 S13: -0.2178 REMARK 3 S21: -0.4697 S22: -0.0787 S23: 0.2102 REMARK 3 S31: 0.1979 S32: 0.1241 S33: -0.0148 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 26.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M AMMONIUM SULFATE AND 100 MM REMARK 280 IMIDAZOLE AT PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.48000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.51500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 640 O HOH A 842 1.88 REMARK 500 O HOH A 796 O HOH A 797 1.89 REMARK 500 O HOH A 775 O HOH A 777 1.93 REMARK 500 O HOH A 724 O HOH A 828 1.95 REMARK 500 O HOH A 671 O HOH A 672 1.99 REMARK 500 O HOH A 556 O HOH A 804 1.99 REMARK 500 NZ LYS A 47 O HOH A 794 2.00 REMARK 500 O HOH B 514 O HOH B 540 2.02 REMARK 500 O HOH B 512 O HOH B 631 2.02 REMARK 500 O HOH B 506 O HOH B 584 2.03 REMARK 500 O HOH B 467 O HOH B 607 2.03 REMARK 500 O HOH A 705 O HOH A 761 2.04 REMARK 500 O HOH A 728 O HOH A 776 2.04 REMARK 500 O HOH B 542 O HOH B 575 2.05 REMARK 500 O HOH A 637 O HOH A 693 2.06 REMARK 500 O HOH B 611 O HOH B 624 2.06 REMARK 500 O HOH A 561 O HOH A 840 2.06 REMARK 500 O HOH A 788 O HOH A 813 2.06 REMARK 500 O HOH B 503 O HOH B 600 2.06 REMARK 500 O HOH A 774 O HOH A 802 2.07 REMARK 500 OE1 GLU A 187 O HOH A 447 2.07 REMARK 500 O HOH B 599 O HOH B 620 2.07 REMARK 500 O HOH A 815 O HOH B 615 2.08 REMARK 500 O HOH A 471 O HOH A 753 2.08 REMARK 500 O HOH A 609 O HOH A 653 2.09 REMARK 500 N GLY B 122 O HOH B 634 2.10 REMARK 500 O HOH A 618 O HOH A 834 2.11 REMARK 500 O HOH A 769 O HOH A 809 2.12 REMARK 500 O HOH B 591 O HOH B 619 2.13 REMARK 500 O HOH A 721 O HOH A 814 2.14 REMARK 500 O HOH A 630 O HOH A 670 2.14 REMARK 500 OD1 ASP A 94 O HOH A 836 2.15 REMARK 500 O HOH B 527 O HOH B 596 2.16 REMARK 500 O HOH A 666 O HOH A 787 2.17 REMARK 500 O HOH A 698 O HOH A 823 2.17 REMARK 500 O HOH B 532 O HOH B 610 2.18 REMARK 500 O HOH A 808 O HOH A 846 2.18 REMARK 500 OE1 GLU A 70 O HOH A 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 748 O HOH B 570 1545 1.93 REMARK 500 O HOH A 565 O HOH A 579 4454 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 58.31 -113.12 REMARK 500 ASN A 138 64.10 -162.17 REMARK 500 GLN B 48 34.27 -84.28 REMARK 500 ALA B 73 25.10 -68.47 REMARK 500 ASN B 138 65.81 -158.93 REMARK 500 THR B 191 -179.39 -179.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 302 DBREF 4JZK A 1 214 UNP K0BFA4 K0BFA4_ECO1E 1 214 DBREF 4JZK B 1 214 UNP K0BFA4 K0BFA4_ECO1E 1 214 SEQRES 1 A 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 A 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 A 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 A 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 A 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 A 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 A 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 A 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 A 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 A 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 A 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 A 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 A 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 A 214 GLU TYR HIS GLN MET THR ALA PRO LEU ILE GLY TYR TYR SEQRES 15 A 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 A 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 A 214 LEU GLU LYS ILE LEU GLY SEQRES 1 B 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 B 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 B 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 B 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 B 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 B 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 B 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 B 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 B 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 B 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 B 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 B 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 B 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 B 214 GLU TYR HIS GLN MET THR ALA PRO LEU ILE GLY TYR TYR SEQRES 15 B 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 B 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 B 214 LEU GLU LYS ILE LEU GLY HET ADP A 301 27 HET AMP A 302 23 HET ADP B 301 27 HET AMP B 302 23 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *697(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLY A 42 1 12 HELIX 3 3 GLY A 46 GLN A 48 5 3 HELIX 4 4 ALA A 49 ALA A 55 1 7 HELIX 5 5 THR A 60 GLN A 74 1 15 HELIX 6 6 GLU A 75 ARG A 78 5 4 HELIX 7 7 THR A 89 ALA A 99 1 11 HELIX 8 8 PRO A 112 GLU A 114 5 3 HELIX 9 9 LEU A 115 GLY A 122 1 8 HELIX 10 10 GLN A 160 THR A 175 1 16 HELIX 11 11 ALA A 176 ALA A 188 1 13 HELIX 12 12 PRO A 201 GLY A 214 1 14 HELIX 13 13 GLY B 12 GLY B 25 1 14 HELIX 14 14 THR B 31 GLY B 42 1 12 HELIX 15 15 GLY B 46 GLN B 48 5 3 HELIX 16 16 ALA B 49 GLY B 56 1 8 HELIX 17 17 THR B 60 ALA B 73 1 14 HELIX 18 18 GLN B 74 GLY B 80 5 7 HELIX 19 19 THR B 89 GLU B 98 1 10 HELIX 20 20 PRO B 112 VAL B 121 1 10 HELIX 21 21 GLN B 160 THR B 175 1 16 HELIX 22 22 ALA B 176 GLY B 189 1 14 HELIX 23 23 PRO B 201 GLY B 214 1 14 SHEET 1 A 5 GLN A 28 SER A 30 0 SHEET 2 A 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 A 5 ARG A 2 GLY A 7 1 N ILE A 3 O LEU A 83 SHEET 4 A 5 TYR A 105 ASP A 110 1 O PHE A 109 N LEU A 6 SHEET 5 A 5 LYS A 192 ASP A 197 1 O VAL A 196 N GLU A 108 SHEET 1 B 2 ARG A 123 VAL A 125 0 SHEET 2 B 2 VAL A 132 HIS A 134 -1 O TYR A 133 N ARG A 124 SHEET 1 C 5 GLN B 28 SER B 30 0 SHEET 2 C 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 C 5 ARG B 2 GLY B 7 1 N ILE B 3 O LEU B 83 SHEET 4 C 5 TYR B 105 ASP B 110 1 O LEU B 107 N LEU B 6 SHEET 5 C 5 LYS B 192 ASP B 197 1 O VAL B 196 N GLU B 108 SHEET 1 D 2 ARG B 123 VAL B 125 0 SHEET 2 D 2 VAL B 132 HIS B 134 -1 O TYR B 133 N ARG B 124 CISPEP 1 PHE A 86 PRO A 87 0 -4.93 CISPEP 2 PHE B 86 PRO B 87 0 -2.69 SITE 1 AC1 21 GLY A 10 ALA A 11 GLY A 12 LYS A 13 SITE 2 AC1 21 GLY A 14 THR A 15 ARG A 119 ARG A 123 SITE 3 AC1 21 VAL A 132 TYR A 133 HIS A 134 PHE A 137 SITE 4 AC1 21 GLY A 198 LYS A 200 VAL A 202 HOH A 401 SITE 5 AC1 21 HOH A 404 HOH A 418 HOH A 433 HOH A 443 SITE 6 AC1 21 HOH A 503 SITE 1 AC2 21 THR A 31 GLY A 32 LEU A 35 ARG A 36 SITE 2 AC2 21 MET A 53 LYS A 57 VAL A 59 VAL A 64 SITE 3 AC2 21 GLY A 85 PHE A 86 ARG A 88 GLN A 92 SITE 4 AC2 21 ARG A 156 ASP A 158 ARG A 167 HOH A 402 SITE 5 AC2 21 HOH A 419 HOH A 423 HOH A 476 HOH A 489 SITE 6 AC2 21 HOH A 503 SITE 1 AC3 22 GLY B 10 ALA B 11 GLY B 12 LYS B 13 SITE 2 AC3 22 GLY B 14 THR B 15 GLU B 62 ARG B 119 SITE 3 AC3 22 ARG B 123 VAL B 132 TYR B 133 HIS B 134 SITE 4 AC3 22 PHE B 137 GLY B 198 LYS B 200 VAL B 202 SITE 5 AC3 22 HOH B 405 HOH B 418 HOH B 419 HOH B 425 SITE 6 AC3 22 HOH B 472 HOH B 516 SITE 1 AC4 22 THR B 31 GLY B 32 LEU B 35 ARG B 36 SITE 2 AC4 22 MET B 53 LYS B 57 VAL B 59 VAL B 64 SITE 3 AC4 22 GLY B 85 PHE B 86 ARG B 88 GLN B 92 SITE 4 AC4 22 ARG B 156 ASP B 158 ARG B 167 HOH B 417 SITE 5 AC4 22 HOH B 418 HOH B 431 HOH B 433 HOH B 448 SITE 6 AC4 22 HOH B 469 HOH B 470 CRYST1 72.960 78.800 83.030 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012044 0.00000