HEADER OXIDOREDUCTASE 03-APR-13 4JZR TITLE STRUCTURE OF PROLYL HYDROXYLASE DOMAIN-CONTAINING PROTEIN (PHD) WITH TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 189-399; COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2, HIF-PH2, HIF- COMPND 6 PROLYL HYDROXYLASE 2, HPH-2, PROLYL HYDROXYLASE DOMAIN-CONTAINING COMPND 7 PROTEIN 2, PHD2, SM-20; COMPND 8 EC: 1.14.11.29; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C1ORF12, EGLN1, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROLYL HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MA,L.YANG REVDAT 1 30-OCT-13 4JZR 0 JRNL AUTH G.DENG,B.ZHAO,Y.MA,Q.XU,H.WANG,L.YANG,Q.ZHANG,T.B.GUO, JRNL AUTH 2 W.ZHANG,Y.JIAO,X.CAI,J.ZHANG,H.LIU,X.GUAN,H.LU,J.XIANG, JRNL AUTH 3 J.D.ELLIOTT,X.LIN,F.REN JRNL TITL NOVEL COMPLEX CRYSTAL STRUCTURE OF PROLYL HYDROXYLASE JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 2 (PHD2): JRNL TITL 3 2,8-DIAZASPIRO[4.5]DECAN-1-ONES AS POTENT, ORALLY JRNL TITL 4 BIOAVAILABLE PHD2 INHIBITORS JRNL REF BIOORG.MED.CHEM. V. 21 6349 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 24055079 JRNL DOI 10.1016/J.BMC.2013.08.046 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1661 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1129 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2254 ; 1.388 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2691 ; 0.900 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 6.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;30.821 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 254 ;14.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1875 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 349 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1010 ; 0.665 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 423 ; 0.060 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1615 ; 1.276 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 651 ; 1.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 2.230 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3350, 200MM AMMONIUM SULFATE, REMARK 280 100MM SODIUM ACETATE, PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.98700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.98700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.98700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 184 REMARK 465 SER A 185 REMARK 465 PHE A 186 REMARK 465 THR A 187 REMARK 465 MET A 188 REMARK 465 GLN A 243 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 ASP A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 LYS A 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 LYS A 286 CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 350 CD CE NZ REMARK 470 GLU A 357 CD OE1 OE2 REMARK 470 ARG A 370 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -63.87 -122.81 REMARK 500 ASN A 284 -134.27 57.92 REMARK 500 PHE A 346 71.59 -118.03 REMARK 500 ALA A 351 58.65 -97.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 ASP A 315 OD2 91.1 REMARK 620 3 HIS A 313 NE2 88.9 92.9 REMARK 620 4 HOH A 537 O 92.7 90.4 176.3 REMARK 620 5 4JR A 402 N2 95.9 172.1 90.9 85.6 REMARK 620 6 4JR A 402 N3 171.7 89.1 82.8 95.5 84.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4JR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 DBREF 4JZR A 189 399 UNP Q9GZT9 EGLN1_HUMAN 189 399 SEQADV 4JZR GLY A 184 UNP Q9GZT9 EXPRESSION TAG SEQADV 4JZR SER A 185 UNP Q9GZT9 EXPRESSION TAG SEQADV 4JZR PHE A 186 UNP Q9GZT9 EXPRESSION TAG SEQADV 4JZR THR A 187 UNP Q9GZT9 EXPRESSION TAG SEQADV 4JZR MET A 188 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 216 GLY SER PHE THR MET PRO ALA LEU LYS LEU ALA LEU GLU SEQRES 2 A 216 TYR ILE VAL PRO CYS MET ASN LYS HIS GLY ILE CYS VAL SEQRES 3 A 216 VAL ASP ASP PHE LEU GLY LYS GLU THR GLY GLN GLN ILE SEQRES 4 A 216 GLY ASP GLU VAL ARG ALA LEU HIS ASP THR GLY LYS PHE SEQRES 5 A 216 THR ASP GLY GLN LEU VAL SER GLN LYS SER ASP SER SER SEQRES 6 A 216 LYS ASP ILE ARG GLY ASP LYS ILE THR TRP ILE GLU GLY SEQRES 7 A 216 LYS GLU PRO GLY CYS GLU THR ILE GLY LEU LEU MET SER SEQRES 8 A 216 SER MET ASP ASP LEU ILE ARG HIS CYS ASN GLY LYS LEU SEQRES 9 A 216 GLY SER TYR LYS ILE ASN GLY ARG THR LYS ALA MET VAL SEQRES 10 A 216 ALA CYS TYR PRO GLY ASN GLY THR GLY TYR VAL ARG HIS SEQRES 11 A 216 VAL ASP ASN PRO ASN GLY ASP GLY ARG CYS VAL THR CYS SEQRES 12 A 216 ILE TYR TYR LEU ASN LYS ASP TRP ASP ALA LYS VAL SER SEQRES 13 A 216 GLY GLY ILE LEU ARG ILE PHE PRO GLU GLY LYS ALA GLN SEQRES 14 A 216 PHE ALA ASP ILE GLU PRO LYS PHE ASP ARG LEU LEU PHE SEQRES 15 A 216 PHE TRP SER ASP ARG ARG ASN PRO HIS GLU VAL GLN PRO SEQRES 16 A 216 ALA TYR ALA THR ARG TYR ALA ILE THR VAL TRP TYR PHE SEQRES 17 A 216 ASP ALA ASP GLU ARG ALA ARG ALA HET NI A 401 1 HET 4JR A 402 30 HET EDO A 403 4 HETNAM NI NICKEL (II) ION HETNAM 4JR 2-(BIPHENYL-4-YL)-8-[(1-METHYL-1H-IMIDAZOL-2-YL) HETNAM 2 4JR METHYL]-2,8-DIAZASPIRO[4.5]DECAN-1-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NI NI 2+ FORMUL 3 4JR C25 H28 N4 O FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *49(H2 O) HELIX 1 1 PRO A 189 TYR A 197 1 9 HELIX 2 2 TYR A 197 GLY A 206 1 10 HELIX 3 3 GLY A 215 THR A 232 1 18 HELIX 4 4 CYS A 266 HIS A 282 1 17 HELIX 5 5 ASP A 335 GLY A 340 1 6 HELIX 6 6 ALA A 393 ARG A 398 1 6 SHEET 1 A 6 ILE A 207 VAL A 210 0 SHEET 2 A 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 A 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 A 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 A 6 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 6 A 6 LYS A 255 ILE A 259 -1 N ILE A 259 O ALA A 298 SHEET 1 B 5 ILE A 207 VAL A 210 0 SHEET 2 B 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 B 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 B 5 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 B 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 C 4 TYR A 310 HIS A 313 0 SHEET 2 C 4 HIS A 374 VAL A 376 -1 O HIS A 374 N HIS A 313 SHEET 3 C 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 C 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.04 LINK NE2 HIS A 374 NI NI A 401 1555 1555 2.01 LINK OD2 ASP A 315 NI NI A 401 1555 1555 2.09 LINK NE2 HIS A 313 NI NI A 401 1555 1555 2.14 LINK NI NI A 401 O HOH A 537 1555 1555 2.26 LINK NI NI A 401 N2 4JR A 402 1555 1555 1.94 LINK NI NI A 401 N3 4JR A 402 1555 1555 2.28 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 4JR A 402 SITE 2 AC1 5 HOH A 537 SITE 1 AC2 13 TYR A 303 TYR A 310 HIS A 313 ASP A 315 SITE 2 AC2 13 ARG A 322 HIS A 374 VAL A 376 TRP A 389 SITE 3 AC2 13 PHE A 391 ARG A 396 NI A 401 EDO A 403 SITE 4 AC2 13 HOH A 537 SITE 1 AC3 5 TYR A 329 LEU A 343 ARG A 383 4JR A 402 SITE 2 AC3 5 HOH A 539 CRYST1 111.455 111.455 39.974 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008972 0.005180 0.000000 0.00000 SCALE2 0.000000 0.010360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025016 0.00000