HEADER CIRCADIAN CLOCK PROTEIN 03-APR-13 4K03 TITLE CRYSTAL STRUCTURE OF DROSOPHILA CRYPROCHROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DMCRY1, DCRY, BLUE LIGHT PHOTORECEPTOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CRY, CG3772; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ROSSMANN FOLD, PHOTORECEPTOR, FAD, CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BERNDT,E.WOLF REVDAT 1 26-JUN-13 4K03 0 JRNL AUTH A.CZARNA,A.BERNDT,H.R.SINGH,A.GRUDZIECKI,A.G.LADURNER, JRNL AUTH 2 G.TIMINSZKY,A.KRAMER,E.WOLF JRNL TITL STRUCTURES OF DROSOPHILA CRYPTOCHROME AND MOUSE JRNL TITL 2 CRYPTOCHROME1 PROVIDE INSIGHT INTO CIRCADIAN FUNCTION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1394 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23746849 JRNL DOI 10.1016/J.CELL.2013.05.011 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4888 - 6.1154 0.99 2789 159 0.1850 0.2553 REMARK 3 2 6.1154 - 4.8566 1.00 2761 158 0.2003 0.2942 REMARK 3 3 4.8566 - 4.2435 1.00 2755 159 0.1556 0.2281 REMARK 3 4 4.2435 - 3.8558 1.00 2792 115 0.1643 0.2299 REMARK 3 5 3.8558 - 3.5796 1.00 2725 155 0.1858 0.2977 REMARK 3 6 3.5796 - 3.3687 1.00 2748 151 0.2181 0.2844 REMARK 3 7 3.3687 - 3.2001 1.00 2746 144 0.2408 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 55.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25010 REMARK 3 B22 (A**2) : 1.15770 REMARK 3 B33 (A**2) : 0.09240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44990 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 8943 REMARK 3 ANGLE : 1.519 12192 REMARK 3 CHIRALITY : 0.093 1304 REMARK 3 PLANARITY : 0.007 1654 REMARK 3 DIHEDRAL : 18.887 3289 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20372 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRISHCL PH 8.0, 17% PEG 3350, REMARK 280 120 MM MG-ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.90500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 ALA A -17 REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 ILE A -12 REMARK 465 GLN A -11 REMARK 465 ARG A -10 REMARK 465 PRO A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 THR A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ASN A 214 REMARK 465 MET A 215 REMARK 465 GLY A 216 REMARK 465 PHE A 217 REMARK 465 LEU A 218 REMARK 465 ALA A 538 REMARK 465 ASP A 539 REMARK 465 VAL A 540 REMARK 465 VAL A 541 REMARK 465 VAL A 542 REMARK 465 GLY B -18 REMARK 465 ALA B -17 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 ILE B -12 REMARK 465 GLN B -11 REMARK 465 ARG B -10 REMARK 465 PRO B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 THR B -6 REMARK 465 ALA B 538 REMARK 465 ASP B 539 REMARK 465 VAL B 540 REMARK 465 VAL B 541 REMARK 465 VAL B 542 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 180 CG CD1 CD2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 ILE A 221 CG1 CG2 CD1 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 PHE A 249 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 SER B -5 OG REMARK 470 SER B -4 OG REMARK 470 LEU B -3 CG CD1 CD2 REMARK 470 VAL B -2 CG1 CG2 REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 ILE B 221 CG1 CG2 CD1 REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 PHE B 249 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 253 CG OD1 ND2 REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 298 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 VAL B 489 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 501 ND2 ASN A 505 2.16 REMARK 500 O ILE B 113 O HOH B 704 2.16 REMARK 500 O LEU B 486 O VAL B 489 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 21 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 LEU A 251 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 LEU A 393 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO A 440 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO B 21 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B 440 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO B 465 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -42.23 -132.91 REMARK 500 LEU A 15 22.04 35.69 REMARK 500 ASP A 19 46.06 37.58 REMARK 500 ASP A 29 52.93 -112.23 REMARK 500 GLN A 32 42.45 -76.48 REMARK 500 GLU A 45 -42.12 -138.35 REMARK 500 ASN A 51 75.84 -109.99 REMARK 500 ASP A 69 -76.14 -54.04 REMARK 500 GLN A 70 -54.53 -25.74 REMARK 500 ALA A 73 24.82 -70.24 REMARK 500 THR A 75 44.28 -144.19 REMARK 500 ASP A 76 72.89 10.26 REMARK 500 ARG A 78 -74.76 -74.92 REMARK 500 ALA A 89 -16.50 -46.71 REMARK 500 GLU A 116 -72.01 -72.80 REMARK 500 SER A 120 -60.90 -29.67 REMARK 500 SER A 137 8.30 -154.60 REMARK 500 TRP A 141 -167.62 -115.64 REMARK 500 PRO A 143 -14.07 -49.94 REMARK 500 ASN A 150 8.78 -66.45 REMARK 500 PRO A 172 161.87 -40.70 REMARK 500 ALA A 176 156.23 -43.81 REMARK 500 ASP A 189 109.59 -47.92 REMARK 500 LYS A 197 6.63 81.79 REMARK 500 PRO A 203 -179.28 -52.21 REMARK 500 ILE A 221 167.09 151.98 REMARK 500 GLU A 227 -27.09 -34.91 REMARK 500 HIS A 243 -34.66 -37.04 REMARK 500 TYR A 250 -64.56 -174.20 REMARK 500 PRO A 252 -147.44 30.67 REMARK 500 ASN A 253 25.12 82.99 REMARK 500 GLN A 254 39.17 158.74 REMARK 500 HIS A 260 52.42 -92.39 REMARK 500 SER A 262 -176.13 -61.65 REMARK 500 VAL A 284 -70.81 -70.21 REMARK 500 ASP A 286 -75.03 -52.37 REMARK 500 LEU A 287 -35.82 -27.93 REMARK 500 LYS A 289 51.07 23.83 REMARK 500 ASN A 290 159.20 69.78 REMARK 500 VAL A 291 134.79 119.94 REMARK 500 ALA A 295 146.95 159.23 REMARK 500 VAL A 297 -93.10 -105.03 REMARK 500 ARG A 298 58.00 -91.04 REMARK 500 GLN A 301 155.56 -44.67 REMARK 500 MET A 331 -63.51 -93.82 REMARK 500 ASN A 346 61.57 -117.27 REMARK 500 GLU A 347 -24.83 -32.74 REMARK 500 ASN A 382 -77.82 -54.55 REMARK 500 ARG A 390 -20.17 70.42 REMARK 500 LEU A 393 -36.84 -16.47 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 393 22.2 L L OUTSIDE RANGE REMARK 500 VAL B 297 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 720 DISTANCE = 14.13 ANGSTROMS REMARK 525 HOH A 723 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JZY RELATED DB: PDB REMARK 900 DROSOPHILA CRYPTOCHROME REMARK 900 RELATED ID: 4K0R RELATED DB: PDB REMARK 900 MOUSE CRYPTOCHROME1 DBREF 4K03 A 1 542 UNP O77059 CRY1_DROME 1 542 DBREF 4K03 B 1 542 UNP O77059 CRY1_DROME 1 542 SEQADV 4K03 GLY A -18 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA A -17 UNP O77059 EXPRESSION TAG SEQADV 4K03 MET A -16 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLY A -15 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER A -14 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLY A -13 UNP O77059 EXPRESSION TAG SEQADV 4K03 ILE A -12 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLN A -11 UNP O77059 EXPRESSION TAG SEQADV 4K03 ARG A -10 UNP O77059 EXPRESSION TAG SEQADV 4K03 PRO A -9 UNP O77059 EXPRESSION TAG SEQADV 4K03 THR A -8 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER A -7 UNP O77059 EXPRESSION TAG SEQADV 4K03 THR A -6 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER A -5 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER A -4 UNP O77059 EXPRESSION TAG SEQADV 4K03 LEU A -3 UNP O77059 EXPRESSION TAG SEQADV 4K03 VAL A -2 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA A -1 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA A 0 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLY B -18 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA B -17 UNP O77059 EXPRESSION TAG SEQADV 4K03 MET B -16 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLY B -15 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER B -14 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLY B -13 UNP O77059 EXPRESSION TAG SEQADV 4K03 ILE B -12 UNP O77059 EXPRESSION TAG SEQADV 4K03 GLN B -11 UNP O77059 EXPRESSION TAG SEQADV 4K03 ARG B -10 UNP O77059 EXPRESSION TAG SEQADV 4K03 PRO B -9 UNP O77059 EXPRESSION TAG SEQADV 4K03 THR B -8 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER B -7 UNP O77059 EXPRESSION TAG SEQADV 4K03 THR B -6 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER B -5 UNP O77059 EXPRESSION TAG SEQADV 4K03 SER B -4 UNP O77059 EXPRESSION TAG SEQADV 4K03 LEU B -3 UNP O77059 EXPRESSION TAG SEQADV 4K03 VAL B -2 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA B -1 UNP O77059 EXPRESSION TAG SEQADV 4K03 ALA B 0 UNP O77059 EXPRESSION TAG SEQRES 1 A 561 GLY ALA MET GLY SER GLY ILE GLN ARG PRO THR SER THR SEQRES 2 A 561 SER SER LEU VAL ALA ALA MET ALA THR ARG GLY ALA ASN SEQRES 3 A 561 VAL ILE TRP PHE ARG HIS GLY LEU ARG LEU HIS ASP ASN SEQRES 4 A 561 PRO ALA LEU LEU ALA ALA LEU ALA ASP LYS ASP GLN GLY SEQRES 5 A 561 ILE ALA LEU ILE PRO VAL PHE ILE PHE ASP GLY GLU SER SEQRES 6 A 561 ALA GLY THR LYS ASN VAL GLY TYR ASN ARG MET ARG PHE SEQRES 7 A 561 LEU LEU ASP SER LEU GLN ASP ILE ASP ASP GLN LEU GLN SEQRES 8 A 561 ALA ALA THR ASP GLY ARG GLY ARG LEU LEU VAL PHE GLU SEQRES 9 A 561 GLY GLU PRO ALA TYR ILE PHE ARG ARG LEU HIS GLU GLN SEQRES 10 A 561 VAL ARG LEU HIS ARG ILE CYS ILE GLU GLN ASP CYS GLU SEQRES 11 A 561 PRO ILE TRP ASN GLU ARG ASP GLU SER ILE ARG SER LEU SEQRES 12 A 561 CYS ARG GLU LEU ASN ILE ASP PHE VAL GLU LYS VAL SER SEQRES 13 A 561 HIS THR LEU TRP ASP PRO GLN LEU VAL ILE GLU THR ASN SEQRES 14 A 561 GLY GLY ILE PRO PRO LEU THR TYR GLN MET PHE LEU HIS SEQRES 15 A 561 THR VAL GLN ILE ILE GLY LEU PRO PRO ARG PRO THR ALA SEQRES 16 A 561 ASP ALA ARG LEU GLU ASP ALA THR PHE VAL GLU LEU ASP SEQRES 17 A 561 PRO GLU PHE CYS ARG SER LEU LYS LEU PHE GLU GLN LEU SEQRES 18 A 561 PRO THR PRO GLU HIS PHE ASN VAL TYR GLY ASP ASN MET SEQRES 19 A 561 GLY PHE LEU ALA LYS ILE ASN TRP ARG GLY GLY GLU THR SEQRES 20 A 561 GLN ALA LEU LEU LEU LEU ASP GLU ARG LEU LYS VAL GLU SEQRES 21 A 561 GLN HIS ALA PHE GLU ARG GLY PHE TYR LEU PRO ASN GLN SEQRES 22 A 561 ALA LEU PRO ASN ILE HIS ASP SER PRO LYS SER MET SER SEQRES 23 A 561 ALA HIS LEU ARG PHE GLY CYS LEU SER VAL ARG ARG PHE SEQRES 24 A 561 TYR TRP SER VAL HIS ASP LEU PHE LYS ASN VAL GLN LEU SEQRES 25 A 561 ARG ALA CYS VAL ARG GLY VAL GLN MET THR GLY GLY ALA SEQRES 26 A 561 HIS ILE THR GLY GLN LEU ILE TRP ARG GLU TYR PHE TYR SEQRES 27 A 561 THR MET SER VAL ASN ASN PRO ASN TYR ASP ARG MET GLU SEQRES 28 A 561 GLY ASN ASP ILE CYS LEU SER ILE PRO TRP ALA LYS PRO SEQRES 29 A 561 ASN GLU ASN LEU LEU GLN SER TRP ARG LEU GLY GLN THR SEQRES 30 A 561 GLY PHE PRO LEU ILE ASP GLY ALA MET ARG GLN LEU LEU SEQRES 31 A 561 ALA GLU GLY TRP LEU HIS HIS THR LEU ARG ASN THR VAL SEQRES 32 A 561 ALA THR PHE LEU THR ARG GLY GLY LEU TRP GLN SER TRP SEQRES 33 A 561 GLU HIS GLY LEU GLN HIS PHE LEU LYS TYR LEU LEU ASP SEQRES 34 A 561 ALA ASP TRP SER VAL CYS ALA GLY ASN TRP MET TRP VAL SEQRES 35 A 561 SER SER SER ALA PHE GLU ARG LEU LEU ASP SER SER LEU SEQRES 36 A 561 VAL THR CYS PRO VAL ALA LEU ALA LYS ARG LEU ASP PRO SEQRES 37 A 561 ASP GLY THR TYR ILE LYS GLN TYR VAL PRO GLU LEU MET SEQRES 38 A 561 ASN VAL PRO LYS GLU PHE VAL HIS GLU PRO TRP ARG MET SEQRES 39 A 561 SER ALA GLU GLN GLN GLU GLN TYR GLU CYS LEU ILE GLY SEQRES 40 A 561 VAL HIS TYR PRO GLU ARG ILE ILE ASP LEU SER MET ALA SEQRES 41 A 561 VAL LYS ARG ASN MET LEU ALA MET LYS SER LEU ARG ASN SEQRES 42 A 561 SER LEU ILE THR PRO PRO PRO HIS CYS ARG PRO SER ASN SEQRES 43 A 561 GLU GLU GLU VAL ARG GLN PHE PHE TRP LEU ALA ASP VAL SEQRES 44 A 561 VAL VAL SEQRES 1 B 561 GLY ALA MET GLY SER GLY ILE GLN ARG PRO THR SER THR SEQRES 2 B 561 SER SER LEU VAL ALA ALA MET ALA THR ARG GLY ALA ASN SEQRES 3 B 561 VAL ILE TRP PHE ARG HIS GLY LEU ARG LEU HIS ASP ASN SEQRES 4 B 561 PRO ALA LEU LEU ALA ALA LEU ALA ASP LYS ASP GLN GLY SEQRES 5 B 561 ILE ALA LEU ILE PRO VAL PHE ILE PHE ASP GLY GLU SER SEQRES 6 B 561 ALA GLY THR LYS ASN VAL GLY TYR ASN ARG MET ARG PHE SEQRES 7 B 561 LEU LEU ASP SER LEU GLN ASP ILE ASP ASP GLN LEU GLN SEQRES 8 B 561 ALA ALA THR ASP GLY ARG GLY ARG LEU LEU VAL PHE GLU SEQRES 9 B 561 GLY GLU PRO ALA TYR ILE PHE ARG ARG LEU HIS GLU GLN SEQRES 10 B 561 VAL ARG LEU HIS ARG ILE CYS ILE GLU GLN ASP CYS GLU SEQRES 11 B 561 PRO ILE TRP ASN GLU ARG ASP GLU SER ILE ARG SER LEU SEQRES 12 B 561 CYS ARG GLU LEU ASN ILE ASP PHE VAL GLU LYS VAL SER SEQRES 13 B 561 HIS THR LEU TRP ASP PRO GLN LEU VAL ILE GLU THR ASN SEQRES 14 B 561 GLY GLY ILE PRO PRO LEU THR TYR GLN MET PHE LEU HIS SEQRES 15 B 561 THR VAL GLN ILE ILE GLY LEU PRO PRO ARG PRO THR ALA SEQRES 16 B 561 ASP ALA ARG LEU GLU ASP ALA THR PHE VAL GLU LEU ASP SEQRES 17 B 561 PRO GLU PHE CYS ARG SER LEU LYS LEU PHE GLU GLN LEU SEQRES 18 B 561 PRO THR PRO GLU HIS PHE ASN VAL TYR GLY ASP ASN MET SEQRES 19 B 561 GLY PHE LEU ALA LYS ILE ASN TRP ARG GLY GLY GLU THR SEQRES 20 B 561 GLN ALA LEU LEU LEU LEU ASP GLU ARG LEU LYS VAL GLU SEQRES 21 B 561 GLN HIS ALA PHE GLU ARG GLY PHE TYR LEU PRO ASN GLN SEQRES 22 B 561 ALA LEU PRO ASN ILE HIS ASP SER PRO LYS SER MET SER SEQRES 23 B 561 ALA HIS LEU ARG PHE GLY CYS LEU SER VAL ARG ARG PHE SEQRES 24 B 561 TYR TRP SER VAL HIS ASP LEU PHE LYS ASN VAL GLN LEU SEQRES 25 B 561 ARG ALA CYS VAL ARG GLY VAL GLN MET THR GLY GLY ALA SEQRES 26 B 561 HIS ILE THR GLY GLN LEU ILE TRP ARG GLU TYR PHE TYR SEQRES 27 B 561 THR MET SER VAL ASN ASN PRO ASN TYR ASP ARG MET GLU SEQRES 28 B 561 GLY ASN ASP ILE CYS LEU SER ILE PRO TRP ALA LYS PRO SEQRES 29 B 561 ASN GLU ASN LEU LEU GLN SER TRP ARG LEU GLY GLN THR SEQRES 30 B 561 GLY PHE PRO LEU ILE ASP GLY ALA MET ARG GLN LEU LEU SEQRES 31 B 561 ALA GLU GLY TRP LEU HIS HIS THR LEU ARG ASN THR VAL SEQRES 32 B 561 ALA THR PHE LEU THR ARG GLY GLY LEU TRP GLN SER TRP SEQRES 33 B 561 GLU HIS GLY LEU GLN HIS PHE LEU LYS TYR LEU LEU ASP SEQRES 34 B 561 ALA ASP TRP SER VAL CYS ALA GLY ASN TRP MET TRP VAL SEQRES 35 B 561 SER SER SER ALA PHE GLU ARG LEU LEU ASP SER SER LEU SEQRES 36 B 561 VAL THR CYS PRO VAL ALA LEU ALA LYS ARG LEU ASP PRO SEQRES 37 B 561 ASP GLY THR TYR ILE LYS GLN TYR VAL PRO GLU LEU MET SEQRES 38 B 561 ASN VAL PRO LYS GLU PHE VAL HIS GLU PRO TRP ARG MET SEQRES 39 B 561 SER ALA GLU GLN GLN GLU GLN TYR GLU CYS LEU ILE GLY SEQRES 40 B 561 VAL HIS TYR PRO GLU ARG ILE ILE ASP LEU SER MET ALA SEQRES 41 B 561 VAL LYS ARG ASN MET LEU ALA MET LYS SER LEU ARG ASN SEQRES 42 B 561 SER LEU ILE THR PRO PRO PRO HIS CYS ARG PRO SER ASN SEQRES 43 B 561 GLU GLU GLU VAL ARG GLN PHE PHE TRP LEU ALA ASP VAL SEQRES 44 B 561 VAL VAL HET FAD A 601 53 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *52(H2 O) HELIX 1 1 ASN A 20 ALA A 26 1 7 HELIX 2 2 GLY A 53 ALA A 73 1 21 HELIX 3 3 GLU A 87 VAL A 99 1 13 HELIX 4 4 ILE A 113 ASN A 129 1 17 HELIX 5 5 ASP A 142 ASN A 150 1 9 HELIX 6 6 THR A 157 ILE A 168 1 12 HELIX 7 7 ASP A 189 LYS A 197 1 9 HELIX 8 8 THR A 204 ASN A 209 5 6 HELIX 9 9 GLY A 225 ARG A 247 1 23 HELIX 10 10 MET A 266 PHE A 272 1 7 HELIX 11 11 SER A 276 LYS A 289 1 14 HELIX 12 12 MET A 302 GLY A 304 5 3 HELIX 13 13 GLY A 305 SER A 322 1 18 HELIX 14 14 ASN A 346 GLY A 356 1 11 HELIX 15 15 PHE A 360 GLY A 374 1 15 HELIX 16 16 HIS A 377 THR A 389 1 13 HELIX 17 17 TRP A 397 LEU A 408 1 12 HELIX 18 18 ASP A 412 SER A 426 1 15 HELIX 19 19 GLU A 429 ASP A 433 5 5 HELIX 20 20 SER A 434 CYS A 439 1 6 HELIX 21 21 LEU A 443 ASP A 448 1 6 HELIX 22 22 GLY A 451 VAL A 458 1 8 HELIX 23 23 PRO A 459 MET A 462 5 4 HELIX 24 24 GLU A 471 MET A 475 5 5 HELIX 25 25 SER A 476 TYR A 483 1 8 HELIX 26 26 ASP A 497 SER A 515 1 19 HELIX 27 27 ASN A 527 TRP A 536 1 10 HELIX 28 28 VAL B -2 GLY B 5 1 8 HELIX 29 29 ASN B 20 ALA B 28 1 9 HELIX 30 30 GLY B 53 THR B 75 1 23 HELIX 31 31 GLU B 87 VAL B 99 1 13 HELIX 32 32 GLU B 111 ILE B 113 5 3 HELIX 33 33 TRP B 114 ASN B 129 1 16 HELIX 34 34 ASP B 142 ASN B 150 1 9 HELIX 35 35 THR B 157 ILE B 168 1 12 HELIX 36 36 ASP B 189 LEU B 196 1 8 HELIX 37 37 THR B 204 ASN B 209 5 6 HELIX 38 38 GLY B 226 ARG B 247 1 22 HELIX 39 39 MET B 266 PHE B 272 1 7 HELIX 40 40 SER B 276 LYS B 289 1 14 HELIX 41 41 MET B 302 GLY B 304 5 3 HELIX 42 42 GLY B 305 MET B 321 1 17 HELIX 43 43 ASN B 346 ARG B 354 1 9 HELIX 44 44 PHE B 360 GLY B 374 1 15 HELIX 45 45 HIS B 377 THR B 389 1 13 HELIX 46 46 SER B 396 LEU B 408 1 13 HELIX 47 47 ASP B 412 SER B 425 1 14 HELIX 48 48 GLU B 429 ASP B 433 5 5 HELIX 49 49 SER B 434 CYS B 439 1 6 HELIX 50 50 PRO B 440 ASP B 448 1 9 HELIX 51 51 GLY B 451 VAL B 458 1 8 HELIX 52 52 PRO B 459 MET B 462 5 4 HELIX 53 53 GLU B 471 MET B 475 5 5 HELIX 54 54 SER B 476 TYR B 483 1 8 HELIX 55 55 ASP B 497 SER B 515 1 19 HELIX 56 56 ASN B 527 PHE B 535 1 9 SHEET 1 A 5 LEU A 82 GLU A 85 0 SHEET 2 A 5 ALA A 35 PHE A 42 1 N PHE A 42 O PHE A 84 SHEET 3 A 5 ALA A 6 PHE A 11 1 N ASN A 7 O ALA A 35 SHEET 4 A 5 ARG A 103 GLU A 107 1 O CYS A 105 N VAL A 8 SHEET 5 A 5 ASP A 131 LYS A 135 1 O ASP A 131 N ILE A 104 SHEET 1 B 5 LEU B 82 GLU B 85 0 SHEET 2 B 5 ALA B 35 PHE B 42 1 N PRO B 38 O LEU B 82 SHEET 3 B 5 ALA B 6 PHE B 11 1 N ASN B 7 O ILE B 37 SHEET 4 B 5 ARG B 103 GLU B 107 1 O CYS B 105 N VAL B 8 SHEET 5 B 5 ASP B 131 LYS B 135 1 O ASP B 131 N ILE B 104 SSBOND 1 CYS A 296 CYS B 296 1555 1555 2.02 CISPEP 1 PRO A 252 ASN A 253 0 -7.90 CISPEP 2 GLY A 392 LEU A 393 0 15.58 CISPEP 3 VAL B 297 ARG B 298 0 22.97 SITE 1 AC1 20 SER A 265 SER A 267 LEU A 270 GLN A 311 SITE 2 AC1 20 LEU A 312 TRP A 314 ARG A 315 PHE A 318 SITE 3 AC1 20 TRP A 375 HIS A 378 ARG A 381 ASN A 382 SITE 4 AC1 20 ASP A 410 ALA A 411 ASP A 412 VAL A 415 SITE 5 AC1 20 CYS A 416 ASN A 419 HOH A 707 HOH A 710 SITE 1 AC2 20 ARG B 237 SER B 265 SER B 267 LEU B 270 SITE 2 AC2 20 GLN B 311 LEU B 312 TRP B 314 ARG B 315 SITE 3 AC2 20 TRP B 375 HIS B 378 ARG B 381 ASN B 382 SITE 4 AC2 20 LEU B 408 ASP B 410 ALA B 411 ASP B 412 SITE 5 AC2 20 VAL B 415 CYS B 416 ASN B 419 PHE B 534 CRYST1 71.120 121.810 79.720 90.00 114.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014061 0.000000 0.006491 0.00000 SCALE2 0.000000 0.008210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013816 0.00000