HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-APR-13 4K05 TITLE CRYSTAL STRUCTURE OF A DUF1343 FAMILY PROTEIN (BF0371) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL EXPORTED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 GENE: BF0371, BF9343_0362; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF07075 FAMILY PROTEIN, DUF1343, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4K05 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4K05 1 JRNL REVDAT 3 15-NOV-17 4K05 1 REMARK REVDAT 2 24-DEC-14 4K05 1 TITLE REVDAT 1 17-APR-13 4K05 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BF0371) FROM JRNL TITL 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.65 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 91455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4574 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5860 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2114 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5541 REMARK 3 BIN R VALUE (WORKING SET) : 0.2099 REMARK 3 BIN FREE R VALUE : 0.2376 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.44 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 319 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 1182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.43920 REMARK 3 B22 (A**2) : -0.49150 REMARK 3 B33 (A**2) : 1.93060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.149 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6703 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9142 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3166 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 159 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1024 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6703 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 844 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9034 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 3. POTASSIUM IONS, FORMATE, PEG ARE PRESENT IN REMARK 3 CRYSTALLIZATION/CRYO CONDITIONS. 4.NCS RESTRAINTS WERE IMPOSED REMARK 3 BY AUTOBUSTER'S LSSR PROCEDURE (-AUTONCS). REMARK 4 REMARK 4 4K05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96109,0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 29.469 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FORMATE, 20% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.04000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.04000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 102 REMARK 465 GLY A 103 REMARK 465 ASP A 104 REMARK 465 LYS A 105 REMARK 465 VAL A 106 REMARK 465 ASP A 107 REMARK 465 ASN A 108 REMARK 465 GLY B 0 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 PRO B 29 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 ARG B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 102 REMARK 465 GLY B 103 REMARK 465 ASP B 104 REMARK 465 LYS B 105 REMARK 465 VAL B 106 REMARK 465 ASP B 107 REMARK 465 ASN B 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 TYR B 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 191 OH TYR A 405 2.13 REMARK 500 OD1 ASN B 305 O HOH B 1195 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 92 -156.37 -87.60 REMARK 500 HIS A 94 -10.12 84.36 REMARK 500 VAL A 100 -62.70 -101.49 REMARK 500 LEU A 121 62.62 -101.79 REMARK 500 ASP A 145 -169.69 -101.22 REMARK 500 SER A 199 59.42 -163.06 REMARK 500 TYR A 285 -167.87 -129.57 REMARK 500 PHE A 289 -3.30 77.09 REMARK 500 SER A 326 -139.91 56.66 REMARK 500 SER A 386 145.43 -171.30 REMARK 500 ARG A 396 19.03 -146.45 REMARK 500 LEU B 121 65.58 -102.33 REMARK 500 SER B 199 58.26 -163.94 REMARK 500 PHE B 289 -0.55 76.70 REMARK 500 SER B 326 -139.94 56.34 REMARK 500 SER B 386 142.77 -173.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 78 O REMARK 620 2 HIS A 79 O 78.3 REMARK 620 3 ALA A 81 O 86.8 107.0 REMARK 620 4 VAL A 84 O 99.1 168.4 84.0 REMARK 620 5 HOH A 794 O 103.7 95.1 157.1 74.4 REMARK 620 6 HOH A 952 O 158.0 83.3 87.3 101.3 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 78 O REMARK 620 2 HIS B 79 O 74.9 REMARK 620 3 ALA B 81 O 84.2 102.8 REMARK 620 4 VAL B 84 O 93.8 164.2 86.8 REMARK 620 5 HOH B 963 O 148.0 80.4 81.6 113.8 REMARK 620 6 HOH B 994 O 103.3 94.4 162.6 77.1 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 222 OE1 REMARK 620 2 1PE B 504 OH6 90.2 REMARK 620 3 1PE B 504 OH4 83.0 117.6 REMARK 620 4 1PE B 504 OH5 107.1 64.7 58.8 REMARK 620 5 1PE B 504 OH7 66.3 59.7 148.8 123.7 REMARK 620 6 HOH B 670 O 143.0 126.7 77.5 89.3 130.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419363 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (27-424) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4K05 A 27 424 UNP Q5LI85 Q5LI85_BACFN 27 424 DBREF 4K05 B 27 424 UNP Q5LI85 Q5LI85_BACFN 27 424 SEQADV 4K05 GLY A 0 UNP Q5LI85 EXPRESSION TAG SEQADV 4K05 GLY B 0 UNP Q5LI85 EXPRESSION TAG SEQRES 1 A 399 GLY ALA GLU PRO GLY ALA ARG PRO PRO ARG ILE ARG ILE SEQRES 2 A 399 LYS THR GLY ILE GLU VAL LEU LYS GLU GLN ASN PHE LYS SEQRES 3 A 399 CYS LEU GLU GLY LYS ARG VAL GLY LEU ILE THR ASN PRO SEQRES 4 A 399 THR GLY VAL ASP ASN HIS LEU ILE SER THR ILE ASP ILE SEQRES 5 A 399 LEU HIS GLU ALA PRO ASN VAL ASN LEU VAL ALA LEU TYR SEQRES 6 A 399 GLY PRO GLU HIS GLY VAL ARG GLY ASP VAL HIS ALA GLY SEQRES 7 A 399 ASP LYS VAL ASP ASN ALA ASN ASP SER SER THR GLY LEU SEQRES 8 A 399 PRO VAL TYR SER LEU TYR GLY LYS THR ARG LYS PRO THR SEQRES 9 A 399 PRO GLU MSE LEU LYS ASP ILE ASP VAL LEU VAL TYR ASP SEQRES 10 A 399 ILE GLN ASP ILE GLY CYS ARG SER PHE THR TYR ILE SER SEQRES 11 A 399 THR MSE GLY VAL ALA MSE GLU ALA ALA ALA GLU ASN ASN SEQRES 12 A 399 LYS GLU PHE ILE VAL LEU ASP ARG PRO ASN PRO ILE GLY SEQRES 13 A 399 GLY LEU LYS ILE GLU GLY ASN VAL VAL GLU ASP GLY TYR SEQRES 14 A 399 ILE SER PHE VAL SER GLN PHE LYS ILE PRO TYR LEU TYR SEQRES 15 A 399 GLY LEU THR CYS GLY GLU LEU ALA LEU MSE LEU ASN GLY SEQRES 16 A 399 GLU GLN MSE LEU SER LYS PRO CYS ASN LEU HIS VAL VAL SEQRES 17 A 399 LYS MSE LYS GLY TRP LYS ARG LYS MSE ASP TYR VAL GLN SEQRES 18 A 399 THR GLY LEU GLN TRP ILE PRO SER SER PRO HIS ILE PRO SEQRES 19 A 399 HIS PRO HIS SER ALA PHE PHE TYR PRO VAL SER GLY ILE SEQRES 20 A 399 LEU GLY GLU LEU GLY TYR MSE SER ILE GLY VAL GLY TYR SEQRES 21 A 399 THR ILE PRO PHE GLN MSE PHE ALA ALA ARG TRP VAL GLU SEQRES 22 A 399 ALA GLU LYS LEU ALA ASP ASN LEU ASN ARG LEU HIS LEU SEQRES 23 A 399 PRO GLY VAL ILE PHE ARG PRO MSE HIS LEU LYS PRO PHE SEQRES 24 A 399 TYR SER VAL GLY LYS GLU GLU HIS LEU GLN GLY VAL GLN SEQRES 25 A 399 VAL HIS ILE VAL ASP PHE ASN LYS ALA SER LEU SER GLU SEQRES 26 A 399 ILE GLN PHE TYR VAL MSE GLN GLU VAL THR ALA LEU TYR SEQRES 27 A 399 PRO ASP ARG ALA VAL PHE ASP HIS ALA ASP LYS GLU ARG SEQRES 28 A 399 PHE HIS MSE PHE ASP LEU VAL SER GLY SER LYS GLU ILE SEQRES 29 A 399 ARG GLU ARG PHE SER GLN ARG ASN ARG TRP GLU ASP VAL SEQRES 30 A 399 ARG ASP TYR TRP TYR LYS ASP VAL ASP ASP PHE ARG ARG SEQRES 31 A 399 LEU SER GLN LYS TYR TYR LEU TYR LYS SEQRES 1 B 399 GLY ALA GLU PRO GLY ALA ARG PRO PRO ARG ILE ARG ILE SEQRES 2 B 399 LYS THR GLY ILE GLU VAL LEU LYS GLU GLN ASN PHE LYS SEQRES 3 B 399 CYS LEU GLU GLY LYS ARG VAL GLY LEU ILE THR ASN PRO SEQRES 4 B 399 THR GLY VAL ASP ASN HIS LEU ILE SER THR ILE ASP ILE SEQRES 5 B 399 LEU HIS GLU ALA PRO ASN VAL ASN LEU VAL ALA LEU TYR SEQRES 6 B 399 GLY PRO GLU HIS GLY VAL ARG GLY ASP VAL HIS ALA GLY SEQRES 7 B 399 ASP LYS VAL ASP ASN ALA ASN ASP SER SER THR GLY LEU SEQRES 8 B 399 PRO VAL TYR SER LEU TYR GLY LYS THR ARG LYS PRO THR SEQRES 9 B 399 PRO GLU MSE LEU LYS ASP ILE ASP VAL LEU VAL TYR ASP SEQRES 10 B 399 ILE GLN ASP ILE GLY CYS ARG SER PHE THR TYR ILE SER SEQRES 11 B 399 THR MSE GLY VAL ALA MSE GLU ALA ALA ALA GLU ASN ASN SEQRES 12 B 399 LYS GLU PHE ILE VAL LEU ASP ARG PRO ASN PRO ILE GLY SEQRES 13 B 399 GLY LEU LYS ILE GLU GLY ASN VAL VAL GLU ASP GLY TYR SEQRES 14 B 399 ILE SER PHE VAL SER GLN PHE LYS ILE PRO TYR LEU TYR SEQRES 15 B 399 GLY LEU THR CYS GLY GLU LEU ALA LEU MSE LEU ASN GLY SEQRES 16 B 399 GLU GLN MSE LEU SER LYS PRO CYS ASN LEU HIS VAL VAL SEQRES 17 B 399 LYS MSE LYS GLY TRP LYS ARG LYS MSE ASP TYR VAL GLN SEQRES 18 B 399 THR GLY LEU GLN TRP ILE PRO SER SER PRO HIS ILE PRO SEQRES 19 B 399 HIS PRO HIS SER ALA PHE PHE TYR PRO VAL SER GLY ILE SEQRES 20 B 399 LEU GLY GLU LEU GLY TYR MSE SER ILE GLY VAL GLY TYR SEQRES 21 B 399 THR ILE PRO PHE GLN MSE PHE ALA ALA ARG TRP VAL GLU SEQRES 22 B 399 ALA GLU LYS LEU ALA ASP ASN LEU ASN ARG LEU HIS LEU SEQRES 23 B 399 PRO GLY VAL ILE PHE ARG PRO MSE HIS LEU LYS PRO PHE SEQRES 24 B 399 TYR SER VAL GLY LYS GLU GLU HIS LEU GLN GLY VAL GLN SEQRES 25 B 399 VAL HIS ILE VAL ASP PHE ASN LYS ALA SER LEU SER GLU SEQRES 26 B 399 ILE GLN PHE TYR VAL MSE GLN GLU VAL THR ALA LEU TYR SEQRES 27 B 399 PRO ASP ARG ALA VAL PHE ASP HIS ALA ASP LYS GLU ARG SEQRES 28 B 399 PHE HIS MSE PHE ASP LEU VAL SER GLY SER LYS GLU ILE SEQRES 29 B 399 ARG GLU ARG PHE SER GLN ARG ASN ARG TRP GLU ASP VAL SEQRES 30 B 399 ARG ASP TYR TRP TYR LYS ASP VAL ASP ASP PHE ARG ARG SEQRES 31 B 399 LEU SER GLN LYS TYR TYR LEU TYR LYS MODRES 4K05 MSE A 132 MET SELENOMETHIONINE MODRES 4K05 MSE A 157 MET SELENOMETHIONINE MODRES 4K05 MSE A 161 MET SELENOMETHIONINE MODRES 4K05 MSE A 217 MET SELENOMETHIONINE MODRES 4K05 MSE A 223 MET SELENOMETHIONINE MODRES 4K05 MSE A 235 MET SELENOMETHIONINE MODRES 4K05 MSE A 242 MET SELENOMETHIONINE MODRES 4K05 MSE A 279 MET SELENOMETHIONINE MODRES 4K05 MSE A 291 MET SELENOMETHIONINE MODRES 4K05 MSE A 319 MET SELENOMETHIONINE MODRES 4K05 MSE A 356 MET SELENOMETHIONINE MODRES 4K05 MSE A 379 MET SELENOMETHIONINE MODRES 4K05 MSE B 132 MET SELENOMETHIONINE MODRES 4K05 MSE B 157 MET SELENOMETHIONINE MODRES 4K05 MSE B 161 MET SELENOMETHIONINE MODRES 4K05 MSE B 217 MET SELENOMETHIONINE MODRES 4K05 MSE B 223 MET SELENOMETHIONINE MODRES 4K05 MSE B 235 MET SELENOMETHIONINE MODRES 4K05 MSE B 242 MET SELENOMETHIONINE MODRES 4K05 MSE B 279 MET SELENOMETHIONINE MODRES 4K05 MSE B 291 MET SELENOMETHIONINE MODRES 4K05 MSE B 319 MET SELENOMETHIONINE MODRES 4K05 MSE B 356 MET SELENOMETHIONINE MODRES 4K05 MSE B 379 MET SELENOMETHIONINE HET MSE A 132 8 HET MSE A 157 8 HET MSE A 161 13 HET MSE A 217 8 HET MSE A 223 8 HET MSE A 235 8 HET MSE A 242 8 HET MSE A 279 8 HET MSE A 291 8 HET MSE A 319 8 HET MSE A 356 8 HET MSE A 379 8 HET MSE B 132 8 HET MSE B 157 8 HET MSE B 161 13 HET MSE B 217 8 HET MSE B 223 8 HET MSE B 235 8 HET MSE B 242 8 HET MSE B 279 8 HET MSE B 291 8 HET MSE B 319 8 HET MSE B 356 8 HET MSE B 379 13 HET K A 501 1 HET K B 501 1 HET K B 502 1 HET FMT B 503 3 HET 1PE B 504 16 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM FMT FORMIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 3 K 3(K 1+) FORMUL 6 FMT C H2 O2 FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *1182(H2 O) HELIX 1 1 THR A 40 GLN A 48 1 9 HELIX 2 2 PHE A 50 GLU A 54 5 5 HELIX 3 3 SER A 73 ALA A 81 1 9 HELIX 4 4 TYR A 122 ARG A 126 5 5 HELIX 5 5 THR A 129 LYS A 134 1 6 HELIX 6 6 THR A 152 ASN A 167 1 16 HELIX 7 7 GLU A 191 ILE A 195 5 5 HELIX 8 8 THR A 210 GLU A 221 1 12 HELIX 9 9 ASP A 243 GLY A 248 1 6 HELIX 10 10 HIS A 260 GLU A 275 1 16 HELIX 11 11 GLU A 298 ARG A 308 1 11 HELIX 12 12 GLU A 350 TYR A 363 1 14 HELIX 13 13 PRO A 364 ARG A 366 5 3 HELIX 14 14 ALA A 367 ALA A 372 1 6 HELIX 15 15 ASP A 373 GLU A 375 5 3 HELIX 16 16 ARG A 376 GLY A 385 1 10 HELIX 17 17 LYS A 387 GLN A 395 1 9 HELIX 18 18 ARG A 398 ASP A 401 5 4 HELIX 19 19 VAL A 402 LYS A 408 1 7 HELIX 20 20 ASP A 409 LYS A 419 1 11 HELIX 21 21 THR B 40 GLN B 48 1 9 HELIX 22 22 PHE B 50 GLU B 54 5 5 HELIX 23 23 SER B 73 ALA B 81 1 9 HELIX 24 24 TYR B 122 ARG B 126 5 5 HELIX 25 25 THR B 129 LYS B 134 1 6 HELIX 26 26 THR B 152 ASN B 167 1 16 HELIX 27 27 GLU B 191 ILE B 195 5 5 HELIX 28 28 THR B 210 GLU B 221 1 12 HELIX 29 29 ASP B 243 GLY B 248 1 6 HELIX 30 30 HIS B 262 GLU B 275 1 14 HELIX 31 31 GLU B 298 ARG B 308 1 11 HELIX 32 32 GLU B 350 TYR B 363 1 14 HELIX 33 33 PRO B 364 ARG B 366 5 3 HELIX 34 34 ALA B 367 ALA B 372 1 6 HELIX 35 35 ASP B 373 GLU B 375 5 3 HELIX 36 36 ARG B 376 GLY B 385 1 10 HELIX 37 37 LYS B 387 ASN B 397 1 11 HELIX 38 38 TRP B 399 LYS B 408 1 10 HELIX 39 39 ASP B 409 LYS B 419 1 11 SHEET 1 A 6 VAL A 118 SER A 120 0 SHEET 2 A 6 ASN A 85 GLY A 91 1 N LEU A 89 O TYR A 119 SHEET 3 A 6 ARG A 57 THR A 62 1 N VAL A 58 O VAL A 87 SHEET 4 A 6 VAL A 138 ASP A 142 1 O VAL A 140 N ILE A 61 SHEET 5 A 6 GLU A 170 LEU A 174 1 O ILE A 172 N LEU A 139 SHEET 6 A 6 ASN A 229 VAL A 233 1 O VAL A 233 N VAL A 173 SHEET 1 B 3 MSE A 291 ALA A 294 0 SHEET 2 B 3 LEU A 333 ILE A 340 -1 O VAL A 336 N PHE A 292 SHEET 3 B 3 VAL A 314 LEU A 321 -1 N LEU A 321 O LEU A 333 SHEET 1 C 6 VAL B 118 SER B 120 0 SHEET 2 C 6 ASN B 85 GLY B 91 1 N GLY B 91 O TYR B 119 SHEET 3 C 6 ARG B 57 THR B 62 1 N VAL B 58 O VAL B 87 SHEET 4 C 6 VAL B 138 ASP B 142 1 O VAL B 140 N ILE B 61 SHEET 5 C 6 GLU B 170 LEU B 174 1 O ILE B 172 N TYR B 141 SHEET 6 C 6 ASN B 229 VAL B 233 1 O VAL B 233 N VAL B 173 SHEET 1 D 3 MSE B 291 ALA B 294 0 SHEET 2 D 3 LEU B 333 ILE B 340 -1 O VAL B 336 N PHE B 292 SHEET 3 D 3 VAL B 314 LEU B 321 -1 N ILE B 315 O HIS B 339 LINK C GLU A 131 N MSE A 132 1555 1555 1.35 LINK C MSE A 132 N LEU A 133 1555 1555 1.36 LINK C THR A 156 N MSE A 157 1555 1555 1.35 LINK C MSE A 157 N GLY A 158 1555 1555 1.33 LINK C ALA A 160 N MSE A 161 1555 1555 1.36 LINK C MSE A 161 N GLU A 162 1555 1555 1.34 LINK C LEU A 216 N MSE A 217 1555 1555 1.34 LINK C MSE A 217 N LEU A 218 1555 1555 1.35 LINK C GLN A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N LEU A 224 1555 1555 1.35 LINK C LYS A 234 N MSE A 235 1555 1555 1.34 LINK C MSE A 235 N LYS A 236 1555 1555 1.32 LINK C LYS A 241 N MSE A 242 1555 1555 1.35 LINK C MSE A 242 N ASP A 243 1555 1555 1.35 LINK C TYR A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N SER A 280 1555 1555 1.33 LINK C GLN A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N PHE A 292 1555 1555 1.35 LINK C PRO A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N HIS A 320 1555 1555 1.34 LINK C VAL A 355 N MSE A 356 1555 1555 1.35 LINK C MSE A 356 N GLN A 357 1555 1555 1.34 LINK C HIS A 378 N MSE A 379 1555 1555 1.35 LINK C MSE A 379 N PHE A 380 1555 1555 1.34 LINK C GLU B 131 N MSE B 132 1555 1555 1.32 LINK C MSE B 132 N LEU B 133 1555 1555 1.34 LINK C THR B 156 N MSE B 157 1555 1555 1.35 LINK C MSE B 157 N GLY B 158 1555 1555 1.34 LINK C ALA B 160 N MSE B 161 1555 1555 1.36 LINK C MSE B 161 N GLU B 162 1555 1555 1.34 LINK C LEU B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N LEU B 218 1555 1555 1.36 LINK C GLN B 222 N MSE B 223 1555 1555 1.35 LINK C MSE B 223 N LEU B 224 1555 1555 1.35 LINK C LYS B 234 N MSE B 235 1555 1555 1.34 LINK C MSE B 235 N LYS B 236 1555 1555 1.34 LINK C LYS B 241 N MSE B 242 1555 1555 1.35 LINK C MSE B 242 N ASP B 243 1555 1555 1.35 LINK C TYR B 278 N MSE B 279 1555 1555 1.33 LINK C MSE B 279 N SER B 280 1555 1555 1.34 LINK C GLN B 290 N MSE B 291 1555 1555 1.33 LINK C MSE B 291 N PHE B 292 1555 1555 1.34 LINK C PRO B 318 N MSE B 319 1555 1555 1.32 LINK C MSE B 319 N HIS B 320 1555 1555 1.33 LINK C VAL B 355 N MSE B 356 1555 1555 1.34 LINK C MSE B 356 N GLN B 357 1555 1555 1.34 LINK C HIS B 378 N MSE B 379 1555 1555 1.37 LINK C MSE B 379 N PHE B 380 1555 1555 1.35 LINK O LEU A 78 K K A 501 1555 1555 2.79 LINK O HIS A 79 K K A 501 1555 1555 2.68 LINK O ALA A 81 K K A 501 1555 1555 2.53 LINK O VAL A 84 K K A 501 1555 1555 2.54 LINK K K A 501 O HOH A 794 1555 1555 2.57 LINK K K A 501 O HOH A 952 1555 1555 2.68 LINK O LEU B 78 K K B 502 1555 1555 2.99 LINK O HIS B 79 K K B 502 1555 1555 2.66 LINK O ALA B 81 K K B 502 1555 1555 2.57 LINK O VAL B 84 K K B 502 1555 1555 2.44 LINK OE1BGLN B 222 K K B 501 1555 1555 2.95 LINK K K B 501 OH6 1PE B 504 1555 1555 2.71 LINK K K B 501 OH4 1PE B 504 1555 1555 2.74 LINK K K B 501 OH5 1PE B 504 1555 1555 2.81 LINK K K B 501 OH7 1PE B 504 1555 1555 2.99 LINK K K B 501 O HOH B 670 1555 1555 3.04 LINK K K B 502 O HOH B 963 1555 1555 2.80 LINK K K B 502 O HOH B 994 1555 1555 2.53 SITE 1 AC1 6 LEU A 78 HIS A 79 ALA A 81 VAL A 84 SITE 2 AC1 6 HOH A 794 HOH A 952 SITE 1 AC2 3 GLN B 222 1PE B 504 HOH B 670 SITE 1 AC3 6 LEU B 78 HIS B 79 ALA B 81 VAL B 84 SITE 2 AC3 6 HOH B 963 HOH B 994 SITE 1 AC4 7 ARG A 415 GLN A 418 HOH A 802 GLY B 55 SITE 2 AC4 7 LYS B 56 ARG B 57 ASN B 85 SITE 1 AC5 7 GLU A 166 ASN A 168 GLY B 220 GLU B 221 SITE 2 AC5 7 GLN B 222 K B 501 HOH B 945 CRYST1 54.080 88.410 159.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006268 0.00000