HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-APR-13 4K1B TITLE STRUCTURE OF PIM-1 KINASE BOUND TO N-(5-(2-FLUOROPHENYL)-1H-PYRROLO[2, TITLE 2 3-B]PYRIDIN-3-YL)-5-((((3R,4R)-3-FLUOROPIPERIDIN-4-YL)METHYL)AMINO) TITLE 3 PYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 124-396); COMPND 5 SYNONYM: PIM-1 KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM-1, PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PIM-1, KINASE DOMAIN, SER/THR KINASE, ATP-COMPETITIVE, STRUCTURE- KEYWDS 2 BASED DRUG DESIGN, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,H.WALLWEBER,M.STEFFEK REVDAT 3 28-FEB-24 4K1B 1 REMARK REVDAT 2 22-MAY-13 4K1B 1 JRNL REVDAT 1 15-MAY-13 4K1B 0 JRNL AUTH X.WANG,S.MAGNUSON,R.PASTOR,E.FAN,H.HU,V.TSUI,W.DENG, JRNL AUTH 2 J.MURRAY,M.STEFFEK,H.WALLWEBER,J.MOFFAT,J.DRUMMOND,G.CHAN, JRNL AUTH 3 E.HARSTAD,A.J.EBENS JRNL TITL DISCOVERY OF NOVEL PYRAZOLO[1,5-A]PYRIMIDINES AS POTENT JRNL TITL 2 PAN-PIM INHIBITORS BY STRUCTURE- AND PROPERTY-BASED DRUG JRNL TITL 3 DESIGN. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 3149 2013 JRNL REFN ISSN 0960-894X JRNL PMID 23623490 JRNL DOI 10.1016/J.BMCL.2013.04.020 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1068 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0101 - 4.4837 1.00 2555 129 0.1582 0.1648 REMARK 3 2 4.4837 - 3.5592 1.00 2532 134 0.1438 0.1757 REMARK 3 3 3.5592 - 3.1094 1.00 2501 141 0.1686 0.2015 REMARK 3 4 3.1094 - 2.8251 1.00 2514 131 0.1828 0.2236 REMARK 3 5 2.8251 - 2.6226 1.00 2510 127 0.1955 0.2199 REMARK 3 6 2.6226 - 2.4680 1.00 2478 151 0.1897 0.2425 REMARK 3 7 2.4680 - 2.3444 1.00 2508 124 0.1968 0.2092 REMARK 3 8 2.3444 - 2.2424 1.00 2488 135 0.2053 0.2580 REMARK 3 9 2.2424 - 2.1560 1.00 2517 126 0.2170 0.2436 REMARK 3 10 2.1560 - 2.0820 1.00 2476 138 0.2270 0.2734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2316 REMARK 3 ANGLE : 0.942 3149 REMARK 3 CHIRALITY : 0.068 333 REMARK 3 PLANARITY : 0.003 408 REMARK 3 DIHEDRAL : 14.091 839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 33:49) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1259 9.1255 -5.5329 REMARK 3 T TENSOR REMARK 3 T11: 0.8378 T22: 0.5069 REMARK 3 T33: 0.7574 T12: 0.0085 REMARK 3 T13: 0.0833 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 3.8767 L22: 5.9887 REMARK 3 L33: 2.1245 L12: -0.6087 REMARK 3 L13: -0.5068 L23: -0.7092 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: 0.2019 S13: 1.0311 REMARK 3 S21: -0.2932 S22: -0.4908 S23: 0.2038 REMARK 3 S31: 0.0516 S32: 1.4786 S33: -0.0897 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 50:73) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7881 6.0842 -7.4131 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.2392 REMARK 3 T33: 0.2952 T12: 0.0549 REMARK 3 T13: 0.0216 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 5.8814 L22: 6.9714 REMARK 3 L33: 5.9233 L12: 1.1369 REMARK 3 L13: -0.1843 L23: -0.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.5117 S12: -0.2259 S13: 0.2846 REMARK 3 S21: 0.0009 S22: 0.5571 S23: 0.4456 REMARK 3 S31: -1.0547 S32: -0.0755 S33: 0.0081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 74:96) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5206 -3.4515 -16.3541 REMARK 3 T TENSOR REMARK 3 T11: 0.5428 T22: 0.5253 REMARK 3 T33: 0.3973 T12: -0.0451 REMARK 3 T13: 0.1387 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.1046 L22: 7.1887 REMARK 3 L33: 6.6971 L12: 3.1499 REMARK 3 L13: 0.1055 L23: -0.4440 REMARK 3 S TENSOR REMARK 3 S11: -0.4724 S12: 0.8831 S13: -0.0240 REMARK 3 S21: -1.2697 S22: 0.3448 S23: -0.9374 REMARK 3 S31: -0.0997 S32: 1.3687 S33: -0.1329 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:140) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4018 -3.6150 -4.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 0.2853 REMARK 3 T33: 0.2802 T12: 0.0632 REMARK 3 T13: -0.0126 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.2068 L22: 4.1246 REMARK 3 L33: 3.1109 L12: 0.3406 REMARK 3 L13: -0.6726 L23: -1.2977 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.1036 S13: 0.2145 REMARK 3 S21: 0.0075 S22: 0.1349 S23: 0.3757 REMARK 3 S31: -0.5203 S32: -0.0156 S33: -0.1614 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:204) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0407 -15.2066 -5.9362 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.2129 REMARK 3 T33: 0.2063 T12: 0.0049 REMARK 3 T13: -0.0137 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.2790 L22: 2.2076 REMARK 3 L33: 2.9430 L12: -0.4434 REMARK 3 L13: -0.8829 L23: -0.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.2190 S12: -0.0875 S13: 0.1037 REMARK 3 S21: -0.1877 S22: -0.0187 S23: -0.0004 REMARK 3 S31: -0.3194 S32: 0.1218 S33: -0.1762 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:250) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8256 -22.1010 3.7942 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.3452 REMARK 3 T33: 0.2745 T12: 0.0051 REMARK 3 T13: -0.0528 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 3.9947 L22: 2.9881 REMARK 3 L33: 4.2216 L12: -0.0633 REMARK 3 L13: -1.7163 L23: -1.6790 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.4660 S13: 0.1083 REMARK 3 S21: 0.2845 S22: -0.0125 S23: -0.3356 REMARK 3 S31: 0.0133 S32: 0.7258 S33: -0.0585 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:290) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5359 -30.3704 1.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.2254 REMARK 3 T33: 0.3628 T12: 0.0482 REMARK 3 T13: -0.0514 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.0416 L22: 2.3770 REMARK 3 L33: 4.3690 L12: -0.3162 REMARK 3 L13: -0.5552 L23: -0.4904 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0339 S13: -0.4945 REMARK 3 S21: -0.1369 S22: 0.0400 S23: 0.1140 REMARK 3 S31: 0.4496 S32: 0.2187 S33: -0.0652 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 291:305) REMARK 3 ORIGIN FOR THE GROUP (A): -58.7911 -18.2838 -1.7495 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.4965 REMARK 3 T33: 0.5227 T12: 0.0311 REMARK 3 T13: -0.0584 T23: 0.1109 REMARK 3 L TENSOR REMARK 3 L11: 6.4897 L22: 9.3536 REMARK 3 L33: 9.0261 L12: 0.1376 REMARK 3 L13: -0.4805 L23: 0.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.3692 S13: -0.5118 REMARK 3 S21: -0.5466 S22: 0.2790 S23: 1.5973 REMARK 3 S31: -0.4885 S32: -1.1814 S33: -0.3458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.082 REMARK 200 RESOLUTION RANGE LOW (A) : 80.542 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 33.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : 0.51000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, 0.2 M LITHIUM SULFATE, 0.1 M REMARK 280 TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.69467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.84733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.27100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.42367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.11833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 57 OD2 ASP A 60 1.89 REMARK 500 OD1 ASP A 176 O HOH A 616 2.07 REMARK 500 OH TYR A 207 O HOH A 599 2.11 REMARK 500 O HOH A 602 O HOH A 605 2.12 REMARK 500 O HOH A 617 O HOH A 623 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 537 O HOH A 551 2454 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 9.08 88.99 REMARK 500 ASP A 60 -52.94 -120.91 REMARK 500 ASP A 167 44.73 -150.28 REMARK 500 ASP A 186 79.62 70.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1OC A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K0Y RELATED DB: PDB REMARK 900 RELATED ID: 4K18 RELATED DB: PDB DBREF 4K1B A 33 305 UNP P11309 PIM1_HUMAN 124 396 SEQRES 1 A 273 PRO LEU GLU SER GLN TYR GLN VAL GLY PRO LEU LEU GLY SEQRES 2 A 273 SER GLY GLY PHE GLY SER VAL TYR SER GLY ILE ARG VAL SEQRES 3 A 273 SER ASP ASN LEU PRO VAL ALA ILE LYS HIS VAL GLU LYS SEQRES 4 A 273 ASP ARG ILE SER ASP TRP GLY GLU LEU PRO ASN GLY THR SEQRES 5 A 273 ARG VAL PRO MET GLU VAL VAL LEU LEU LYS LYS VAL SER SEQRES 6 A 273 SER GLY PHE SER GLY VAL ILE ARG LEU LEU ASP TRP PHE SEQRES 7 A 273 GLU ARG PRO ASP SER PHE VAL LEU ILE LEU GLU ARG PRO SEQRES 8 A 273 GLU PRO VAL GLN ASP LEU PHE ASP PHE ILE THR GLU ARG SEQRES 9 A 273 GLY ALA LEU GLN GLU GLU LEU ALA ARG SER PHE PHE TRP SEQRES 10 A 273 GLN VAL LEU GLU ALA VAL ARG HIS CYS HIS ASN CYS GLY SEQRES 11 A 273 VAL LEU HIS ARG ASP ILE LYS ASP GLU ASN ILE LEU ILE SEQRES 12 A 273 ASP LEU ASN ARG GLY GLU LEU LYS LEU ILE ASP PHE GLY SEQRES 13 A 273 SER GLY ALA LEU LEU LYS ASP THR VAL TYR THR ASP PHE SEQRES 14 A 273 ASP GLY THR ARG VAL TYR SER PRO PRO GLU TRP ILE ARG SEQRES 15 A 273 TYR HIS ARG TYR HIS GLY ARG SER ALA ALA VAL TRP SER SEQRES 16 A 273 LEU GLY ILE LEU LEU TYR ASP MET VAL CYS GLY ASP ILE SEQRES 17 A 273 PRO PHE GLU HIS ASP GLU GLU ILE ILE ARG GLY GLN VAL SEQRES 18 A 273 PHE PHE ARG GLN ARG VAL SER SER GLU CYS GLN HIS LEU SEQRES 19 A 273 ILE ARG TRP CYS LEU ALA LEU ARG PRO SER ASP ARG PRO SEQRES 20 A 273 THR PHE GLU GLU ILE GLN ASN HIS PRO TRP MET GLN ASP SEQRES 21 A 273 VAL LEU LEU PRO GLN GLU THR ALA GLU ILE HIS LEU HIS HET PO4 A 401 5 HET 1OC A 402 37 HETNAM PO4 PHOSPHATE ION HETNAM 1OC N-[5-(2-FLUOROPHENYL)-1H-PYRROLO[2,3-B]PYRIDIN-3-YL]-5- HETNAM 2 1OC ({[(3R,4R)-3-FLUOROPIPERIDIN-4-YL]METHYL}AMINO) HETNAM 3 1OC PYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXAMIDE FORMUL 2 PO4 O4 P 3- FORMUL 3 1OC C26 H24 F2 N8 O FORMUL 4 HOH *127(H2 O) HELIX 1 1 ASP A 72 ILE A 74 5 3 HELIX 2 2 MET A 88 SER A 97 1 10 HELIX 3 3 LEU A 129 GLY A 137 1 9 HELIX 4 4 GLN A 140 CYS A 161 1 22 HELIX 5 5 LYS A 169 GLU A 171 5 3 HELIX 6 6 THR A 204 SER A 208 5 5 HELIX 7 7 PRO A 209 HIS A 216 1 8 HELIX 8 8 HIS A 219 GLY A 238 1 20 HELIX 9 9 HIS A 244 GLY A 251 1 8 HELIX 10 10 SER A 260 LEU A 271 1 12 HELIX 11 11 ARG A 274 ARG A 278 5 5 HELIX 12 12 THR A 280 ASN A 286 1 7 HELIX 13 13 HIS A 287 GLN A 291 5 5 HELIX 14 14 LEU A 295 LEU A 304 1 10 SHEET 1 A 5 TYR A 38 SER A 46 0 SHEET 2 A 5 SER A 51 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 A 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53 SHEET 4 A 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67 SHEET 5 A 5 LEU A 106 GLU A 111 -1 N PHE A 110 O VAL A 117 SHEET 1 B 2 TRP A 77 GLU A 79 0 SHEET 2 B 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 C 3 VAL A 126 ASP A 128 0 SHEET 2 C 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 C 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 D 2 VAL A 163 LEU A 164 0 SHEET 2 D 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 PRO A 33 LEU A 34 0 -8.87 CISPEP 2 ASP A 60 ASN A 61 0 -24.67 CISPEP 3 GLU A 124 PRO A 125 0 3.02 SITE 1 AC1 7 ARG A 156 ARG A 258 SER A 261 PHE A 281 SITE 2 AC1 7 HOH A 509 HOH A 579 HOH A 600 SITE 1 AC2 16 LEU A 44 VAL A 52 ALA A 65 LYS A 67 SITE 2 AC2 16 LEU A 120 GLU A 121 ARG A 122 VAL A 126 SITE 3 AC2 16 ASP A 128 GLU A 171 LEU A 174 ILE A 185 SITE 4 AC2 16 ASP A 186 HOH A 520 HOH A 548 HOH A 592 CRYST1 97.993 97.993 80.542 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.005892 0.000000 0.00000 SCALE2 0.000000 0.011784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012416 0.00000