HEADER TRANSCRIPTION/DNA 05-APR-13 4K1M OBSLTE 02-DEC-15 4K1M 4YRV TITLE CRYSTAL STRUCTURE OF ANABAENA TRANSCRIPTION FACTOR HETR COMPLEXED WITH TITLE 2 21BP DNA FROM HETP PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROCYST DIFFERENTIATION CONTROL PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: HETR; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*GP*CP*GP*AP*GP*GP*GP*GP*TP*CP*TP*AP*AP*CP*CP*CP*CP*TP*CP*AP*T)- COMPND 10 3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(P*AP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*GP*AP*CP*CP*CP*CP*TP*CP*GP*C)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 3 ORGANISM_COMMON: ANABAENA; SOURCE 4 ORGANISM_TAXID: 103690; SOURCE 5 STRAIN: PCC 7120; SOURCE 6 GENE: HETR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120; SOURCE 15 ORGANISM_COMMON: ANABAENA SP. PCC 7120; SOURCE 16 ORGANISM_TAXID: 103690; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120; SOURCE 20 ORGANISM_COMMON: ANABAENA SP. PCC 7120; SOURCE 21 ORGANISM_TAXID: 103690 KEYWDS HTH MOTIF, TRANSCRIPTION FACTOR, DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.X.HU,Y.L.JIANG,Y.CHEN,C.Z.ZHOU REVDAT 2 02-DEC-15 4K1M 1 OBSLTE REVDAT 1 17-APR-13 4K1M 0 JRNL AUTH H.X.HU,Y.L.JIANG,M.X.ZHAO,P.F.ZHU,X.Y.YANG,Y.M.REN,B.WEN, JRNL AUTH 2 Z.Y.ZHANG,Q.WU,Y.CHEN,C.ZHANG,C.Z.ZHOU JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF ANABAENA JRNL TITL 2 TRANSCRIPTIONAL FACTOR HETR REVEAL INSIGHTS INTO ITS JRNL TITL 3 RECOGNITION TO DNA AND INACTIVATION BY THE HEXAPEPTIDE JRNL TITL 4 ERGSGR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9492 - 5.8253 0.95 2807 129 0.2121 0.2341 REMARK 3 2 5.8253 - 4.6260 1.00 2735 161 0.1860 0.2514 REMARK 3 3 4.6260 - 4.0419 0.99 2703 136 0.1667 0.2427 REMARK 3 4 4.0419 - 3.6726 1.00 2679 154 0.1891 0.2637 REMARK 3 5 3.6726 - 3.4095 1.00 2658 158 0.1955 0.2365 REMARK 3 6 3.4095 - 3.2086 1.00 2652 144 0.2068 0.3115 REMARK 3 7 3.2086 - 3.0479 1.00 2645 139 0.2424 0.3460 REMARK 3 8 3.0479 - 2.9153 1.00 2632 134 0.2809 0.3803 REMARK 3 9 2.9153 - 2.8031 0.99 2634 142 0.3085 0.3801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 73.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.780 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.28910 REMARK 3 B22 (A**2) : 6.28910 REMARK 3 B33 (A**2) : -12.57810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5848 REMARK 3 ANGLE : 1.256 8071 REMARK 3 CHIRALITY : 0.078 866 REMARK 3 PLANARITY : 0.005 888 REMARK 3 DIHEDRAL : 20.831 2303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.9009 38.2040 8.9873 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.2452 REMARK 3 T33: 0.1940 T12: 0.0894 REMARK 3 T13: -0.0137 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.8507 L22: 0.7932 REMARK 3 L33: 1.5000 L12: -0.0439 REMARK 3 L13: 0.5468 L23: -0.5002 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0379 S13: -0.1542 REMARK 3 S21: -0.1516 S22: -0.0068 S23: -0.0465 REMARK 3 S31: 0.0714 S32: 0.3036 S33: -0.0065 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97886 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HRI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M CALCIUM ACETATE, 0.1M BICINE, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.16000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.27950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.27950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.27950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.27950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.74000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.27950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.27950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.58000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.27950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.27950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 181.74000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 121.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 216 REMARK 465 PRO B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 ASP B 220 REMARK 465 GLN B 221 REMARK 465 GLY B 284 REMARK 465 GLY B 285 REMARK 465 ILE B 286 REMARK 465 ASP B 299 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 GLU A 298 REMARK 465 ASP A 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT C 9 C7 REMARK 470 DT C 11 C7 REMARK 470 DT C 18 C7 REMARK 470 DT C 21 C7 REMARK 470 DT D 2 C7 REMARK 470 DT D 18 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 234 O HOH A 312 1.90 REMARK 500 O ILE A 117 NH1 ARG A 120 1.98 REMARK 500 NZ LYS B 239 OE1 GLU B 243 2.01 REMARK 500 CG1 VAL A 150 CB GLU A 154 2.14 REMARK 500 O LEU A 128 N LYS A 133 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 70 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG C 5 C1' - O4' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DG C 5 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 10 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 12 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC C 14 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 15 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DC C 16 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 21 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 10 N3 - C4 - O4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG D 12 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC D 15 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 17 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 69 64.02 60.03 REMARK 500 MET B 87 -73.41 -82.68 REMARK 500 SER B 97 168.19 173.82 REMARK 500 ASN B 143 73.33 53.44 REMARK 500 PRO B 213 40.76 -89.68 REMARK 500 PHE B 214 158.95 173.70 REMARK 500 GLN B 267 -71.40 -46.73 REMARK 500 HIS B 281 -177.15 177.93 REMARK 500 GLN B 282 -138.24 70.20 REMARK 500 ASP A 4 -19.76 76.18 REMARK 500 LYS A 9 -70.64 -50.27 REMARK 500 LEU A 86 -73.47 -75.75 REMARK 500 LYS A 90 68.17 19.51 REMARK 500 GLN A 98 -20.77 77.73 REMARK 500 THR A 126 -71.76 -132.63 REMARK 500 LEU A 128 3.27 -63.56 REMARK 500 THR A 129 -165.86 -61.77 REMARK 500 SER A 142 -179.36 -68.30 REMARK 500 ALA A 147 157.56 178.95 REMARK 500 PRO A 202 -172.34 -67.84 REMARK 500 MET A 205 149.02 69.47 REMARK 500 ARG A 212 149.34 68.48 REMARK 500 TYR A 215 -142.41 52.84 REMARK 500 ASP A 220 -157.33 -154.69 REMARK 500 GLN A 221 -6.75 95.84 REMARK 500 VAL A 257 71.35 22.66 REMARK 500 HIS A 281 -167.77 -163.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 88 GLY A 89 149.93 REMARK 500 GLY A 89 LYS A 90 142.07 REMARK 500 THR A 129 SER A 130 -132.59 REMARK 500 ASP A 219 ASP A 220 -147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 90 24.2 L L OUTSIDE RANGE REMARK 500 ASN A 247 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 59 O REMARK 620 2 DG D 3 OP1 76.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QOD RELATED DB: PDB REMARK 900 RELATED ID: 4HRI RELATED DB: PDB DBREF 4K1M B 1 299 UNP P27709 HETR_NOSS1 1 299 DBREF 4K1M A 1 299 UNP P27709 HETR_NOSS1 1 299 DBREF 4K1M C 1 21 PDB 4K1M 4K1M 1 21 DBREF 4K1M D 1 21 PDB 4K1M 4K1M 1 21 SEQADV 4K1M MET B -7 UNP P27709 EXPRESSION TAG SEQADV 4K1M GLY B -6 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B -5 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B -4 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B -3 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B -2 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B -1 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS B 0 UNP P27709 EXPRESSION TAG SEQADV 4K1M MET A -7 UNP P27709 EXPRESSION TAG SEQADV 4K1M GLY A -6 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A -5 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A -4 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A -3 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A -2 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A -1 UNP P27709 EXPRESSION TAG SEQADV 4K1M HIS A 0 UNP P27709 EXPRESSION TAG SEQRES 1 B 307 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASN ASP ILE SEQRES 2 B 307 ASP LEU ILE LYS ARG LEU GLY PRO SER ALA MET ASP GLN SEQRES 3 B 307 ILE MET LEU TYR LEU ALA PHE SER ALA MET ARG THR SER SEQRES 4 B 307 GLY HIS ARG HIS GLY ALA PHE LEU ASP ALA ALA ALA THR SEQRES 5 B 307 ALA ALA LYS CYS ALA ILE TYR MET THR TYR LEU GLU GLN SEQRES 6 B 307 GLY GLN ASN LEU ARG MET THR GLY HIS LEU HIS HIS LEU SEQRES 7 B 307 GLU PRO LYS ARG VAL LYS ILE ILE VAL GLU GLU VAL ARG SEQRES 8 B 307 GLN ALA LEU MET GLU GLY LYS LEU LEU LYS THR LEU GLY SEQRES 9 B 307 SER GLN GLU PRO ARG TYR LEU ILE GLN PHE PRO TYR VAL SEQRES 10 B 307 TRP MET GLU GLN TYR PRO TRP ILE PRO GLY ARG SER ARG SEQRES 11 B 307 ILE PRO GLY THR SER LEU THR SER GLU GLU LYS ARG GLN SEQRES 12 B 307 ILE GLU HIS LYS LEU PRO SER ASN LEU PRO ASP ALA GLN SEQRES 13 B 307 LEU VAL THR SER PHE GLU PHE LEU GLU LEU ILE GLU PHE SEQRES 14 B 307 LEU HIS LYS ARG SER GLN GLU ASP LEU PRO PRO GLU HIS SEQRES 15 B 307 ARG MET GLU LEU SER GLU ALA LEU ALA GLU HIS ILE LYS SEQRES 16 B 307 ARG ARG LEU LEU TYR SER GLY THR VAL THR ARG ILE ASP SEQRES 17 B 307 SER PRO TRP GLY MET PRO PHE TYR ALA LEU THR ARG PRO SEQRES 18 B 307 PHE TYR ALA PRO ALA ASP ASP GLN GLU ARG THR TYR ILE SEQRES 19 B 307 MET VAL GLU ASP THR ALA ARG TYR PHE ARG MET MET LYS SEQRES 20 B 307 ASP TRP ALA GLU LYS ARG PRO ASN ALA MET ARG ALA LEU SEQRES 21 B 307 GLU GLU LEU ASP VAL PRO PRO GLU ARG TRP ASP GLU ALA SEQRES 22 B 307 MET GLN GLU LEU ASP GLU ILE ILE ARG THR TRP ALA ASP SEQRES 23 B 307 LYS TYR HIS GLN VAL GLY GLY ILE PRO MET ILE LEU GLN SEQRES 24 B 307 MET VAL PHE GLY ARG LYS GLU ASP SEQRES 1 A 307 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASN ASP ILE SEQRES 2 A 307 ASP LEU ILE LYS ARG LEU GLY PRO SER ALA MET ASP GLN SEQRES 3 A 307 ILE MET LEU TYR LEU ALA PHE SER ALA MET ARG THR SER SEQRES 4 A 307 GLY HIS ARG HIS GLY ALA PHE LEU ASP ALA ALA ALA THR SEQRES 5 A 307 ALA ALA LYS CYS ALA ILE TYR MET THR TYR LEU GLU GLN SEQRES 6 A 307 GLY GLN ASN LEU ARG MET THR GLY HIS LEU HIS HIS LEU SEQRES 7 A 307 GLU PRO LYS ARG VAL LYS ILE ILE VAL GLU GLU VAL ARG SEQRES 8 A 307 GLN ALA LEU MET GLU GLY LYS LEU LEU LYS THR LEU GLY SEQRES 9 A 307 SER GLN GLU PRO ARG TYR LEU ILE GLN PHE PRO TYR VAL SEQRES 10 A 307 TRP MET GLU GLN TYR PRO TRP ILE PRO GLY ARG SER ARG SEQRES 11 A 307 ILE PRO GLY THR SER LEU THR SER GLU GLU LYS ARG GLN SEQRES 12 A 307 ILE GLU HIS LYS LEU PRO SER ASN LEU PRO ASP ALA GLN SEQRES 13 A 307 LEU VAL THR SER PHE GLU PHE LEU GLU LEU ILE GLU PHE SEQRES 14 A 307 LEU HIS LYS ARG SER GLN GLU ASP LEU PRO PRO GLU HIS SEQRES 15 A 307 ARG MET GLU LEU SER GLU ALA LEU ALA GLU HIS ILE LYS SEQRES 16 A 307 ARG ARG LEU LEU TYR SER GLY THR VAL THR ARG ILE ASP SEQRES 17 A 307 SER PRO TRP GLY MET PRO PHE TYR ALA LEU THR ARG PRO SEQRES 18 A 307 PHE TYR ALA PRO ALA ASP ASP GLN GLU ARG THR TYR ILE SEQRES 19 A 307 MET VAL GLU ASP THR ALA ARG TYR PHE ARG MET MET LYS SEQRES 20 A 307 ASP TRP ALA GLU LYS ARG PRO ASN ALA MET ARG ALA LEU SEQRES 21 A 307 GLU GLU LEU ASP VAL PRO PRO GLU ARG TRP ASP GLU ALA SEQRES 22 A 307 MET GLN GLU LEU ASP GLU ILE ILE ARG THR TRP ALA ASP SEQRES 23 A 307 LYS TYR HIS GLN VAL GLY GLY ILE PRO MET ILE LEU GLN SEQRES 24 A 307 MET VAL PHE GLY ARG LYS GLU ASP SEQRES 1 C 21 DG DC DG DA DG DG DG DG DT DC DT DA DA SEQRES 2 C 21 DC DC DC DC DT DC DA DT SEQRES 1 D 21 DA DT DG DA DG DG DG DG DT DT DA DG DA SEQRES 2 D 21 DC DC DC DC DT DC DG DC HET CA B 301 1 HET CA C 101 1 HET CA C 102 1 HET CA D 101 1 HETNAM CA CALCIUM ION FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *31(H2 O) HELIX 1 1 ASP B 4 ARG B 10 1 7 HELIX 2 2 SER B 14 ARG B 29 1 16 HELIX 3 3 ARG B 34 GLN B 57 1 24 HELIX 4 4 ASN B 60 HIS B 69 1 10 HELIX 5 5 GLU B 71 GLU B 88 1 18 HELIX 6 6 PRO B 100 GLN B 105 1 6 HELIX 7 7 GLN B 105 TYR B 114 1 10 HELIX 8 8 THR B 129 LEU B 140 1 12 HELIX 9 9 SER B 152 ASP B 169 1 18 HELIX 10 10 LEU B 170 ARG B 175 5 6 HELIX 11 11 SER B 179 SER B 193 1 15 HELIX 12 12 ARG B 223 GLU B 243 1 21 HELIX 13 13 PRO B 258 GLU B 260 5 3 HELIX 14 14 ARG B 261 ASP B 278 1 18 HELIX 15 15 ILE A 5 GLY A 12 1 8 HELIX 16 16 SER A 14 ARG A 29 1 16 HELIX 17 17 ARG A 34 GLN A 57 1 24 HELIX 18 18 ASN A 60 HIS A 69 1 10 HELIX 19 19 GLU A 71 GLU A 88 1 18 HELIX 20 20 PRO A 100 GLN A 105 1 6 HELIX 21 21 GLN A 105 TYR A 114 1 10 HELIX 22 22 THR A 129 LYS A 139 1 11 HELIX 23 23 SER A 152 GLN A 167 1 16 HELIX 24 24 PRO A 171 ARG A 175 5 5 HELIX 25 25 SER A 179 SER A 193 1 15 HELIX 26 26 GLU A 222 GLU A 243 1 22 HELIX 27 27 ARG A 261 TYR A 280 1 20 SHEET 1 A 3 VAL B 150 THR B 151 0 SHEET 2 A 3 PHE B 207 LEU B 210 -1 O TYR B 208 N VAL B 150 SHEET 3 A 3 VAL B 196 ILE B 199 -1 N ILE B 199 O PHE B 207 SHEET 1 B 4 MET B 249 LEU B 255 0 SHEET 2 B 4 MET A 288 GLY A 295 -1 O LEU A 290 N GLU B 253 SHEET 3 B 4 MET B 288 ARG B 296 -1 N GLY B 295 O ILE A 289 SHEET 4 B 4 MET A 249 LEU A 255 -1 O LEU A 255 N MET B 288 SHEET 1 C 3 LEU A 149 THR A 151 0 SHEET 2 C 3 PHE A 207 LEU A 210 -1 O TYR A 208 N VAL A 150 SHEET 3 C 3 VAL A 196 ILE A 199 -1 N ILE A 199 O PHE A 207 LINK O GLN B 59 CA CA B 301 1555 1555 2.73 LINK OP1 DG D 3 CA CA B 301 1555 1555 2.93 SITE 1 AC1 2 GLN B 59 DG D 3 SITE 1 AC2 1 DT C 11 CRYST1 90.559 90.559 242.320 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004127 0.00000 CONECT 422 5633 CONECT 5243 5633 CONECT 5633 422 5243 MASTER 446 0 4 27 10 0 2 6 5663 4 3 52 END