HEADER HYDROLASE/HYDROLASE INHIBITOR 09-APR-13 4K2F TITLE STRUCTURE OF PSEUDOMONAS AERUGINOSA PVDQ BOUND TO BRD-A08522488 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT (UNP RESIDUES 24-193); COMPND 5 SYNONYM: AHL ACYLASE PVDQ, ACYL-HSL ACYLASE PVDQ; COMPND 6 EC: 3.5.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: BETA SUBUNIT (UNP RESIDUES 217-762); COMPND 12 SYNONYM: AHL ACYLASE PVDQ, ACYL-HSL ACYLASE PVDQ; COMPND 13 EC: 3.5.1.97; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: PVDQ, QSC112, PA2385; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 10 ORGANISM_TAXID: 208964; SOURCE 11 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 12 GENE: PVDQ, QSC112, PA2385; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDOHYDROLASE, BACTERIAL PROTEIN, CATALYTIC DOMAIN, HIGH-THROUGHPUT KEYWDS 2 SCREENING ASSAYS, MOLECULAR SEQUENCE DATA, OLIGOPEPTIDES, SMALL KEYWDS 3 MOLECULE LIBRARIES, STRUCTURE-ACTIVITY RELATIONSHIP, HYDROLASE- KEYWDS 4 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.J.DRAKE,J.M.WURST,J.R.THERIAULT,B.MUNOZ,A.M.GULICK REVDAT 3 20-SEP-23 4K2F 1 REMARK REVDAT 2 30-JUL-14 4K2F 1 JRNL REVDAT 1 18-JUN-14 4K2F 0 JRNL AUTH J.M.WURST,E.J.DRAKE,J.R.THERIAULT,I.T.JEWETT,L.VERPLANK, JRNL AUTH 2 J.R.PEREZ,S.DANDAPANI,M.PALMER,S.M.MOSKOWITZ,S.L.SCHREIBER, JRNL AUTH 3 B.MUNOZ,A.M.GULICK JRNL TITL IDENTIFICATION OF INHIBITORS OF PVDQ, AN ENZYME INVOLVED IN JRNL TITL 2 THE SYNTHESIS OF THE SIDEROPHORE PYOVERDINE. JRNL REF ACS CHEM.BIOL. V. 9 1536 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24824984 JRNL DOI 10.1021/CB5001586 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 60638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5675 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7718 ; 2.047 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 6.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;36.400 ;23.358 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;13.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;18.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4458 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3554 ; 1.300 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5667 ; 2.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2121 ; 3.504 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2047 ; 5.418 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4K2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3L94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG4000, 50-100 MM RUBIDIUM REMARK 280 CHLORIDE, 50 MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.01000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.14000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.01000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 24 REMARK 465 MET A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 29 OG1 CG2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 LYS A 144 CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ARG B 278 NE CZ NH1 NH2 REMARK 470 LYS B 302 CE NZ REMARK 470 LYS B 319 CE NZ REMARK 470 LYS B 331 CE NZ REMARK 470 LYS B 530 CD REMARK 470 ARG B 553 NE NH1 NH2 REMARK 470 LYS B 562 CG CD CE NZ REMARK 470 GLU B 598 CG CD OE1 OE2 REMARK 470 LYS B 604 CE NZ REMARK 470 GLN B 610 OE1 NE2 REMARK 470 GLN B 625 CG CD OE1 NE2 REMARK 470 LYS B 643 CE NZ REMARK 470 ASP B 648 CB CG OD1 OD2 REMARK 470 ARG B 651 CZ NH1 NH2 REMARK 470 GLU B 705 CG CD OE1 OE2 REMARK 470 ARG B 747 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLN A 113 O HOH A 405 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 276 CE1 PHE B 276 CZ 0.142 REMARK 500 VAL B 349 CB VAL B 349 CG1 0.126 REMARK 500 ALA B 470 CA ALA B 470 CB 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 247 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 660 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 660 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 27.11 -145.87 REMARK 500 ASN A 107 48.42 -107.50 REMARK 500 ARG B 258 -2.84 -146.00 REMARK 500 PRO B 270 42.75 -93.77 REMARK 500 LYS B 353 -56.22 -133.70 REMARK 500 ASN B 357 -156.79 -114.37 REMARK 500 TRP B 402 28.43 -156.17 REMARK 500 ASP B 479 -70.36 -100.97 REMARK 500 PRO B 647 177.11 -53.67 REMARK 500 ASN B 678 76.87 -68.70 REMARK 500 SER B 696 -94.03 -138.25 REMARK 500 SER B 717 162.83 76.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A08 B 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SRA RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGIONSA PVDQ COVALENTLY ACYLATED WITH REMARK 900 MYRISTIC ACID FROM PVDIQ REMARK 900 RELATED ID: 3SRB RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA PVDQ BOUND TO SMER28 REMARK 900 RELATED ID: 3SRC RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA PVDQ BOUND TO NS2028 REMARK 900 RELATED ID: 4K2G RELATED DB: PDB DBREF 4K2F A 24 193 UNP Q9I194 PVDQ_PSEAE 24 193 DBREF 4K2F B 217 762 UNP Q9I194 PVDQ_PSEAE 217 762 SEQRES 1 A 170 ASP MET PRO ARG PRO THR GLY LEU ALA ALA ASP ILE ARG SEQRES 2 A 170 TRP THR ALA TYR GLY VAL PRO HIS ILE ARG ALA LYS ASP SEQRES 3 A 170 GLU ARG GLY LEU GLY TYR GLY ILE GLY TYR ALA TYR ALA SEQRES 4 A 170 ARG ASP ASN ALA CYS LEU LEU ALA GLU GLU ILE VAL THR SEQRES 5 A 170 ALA ARG GLY GLU ARG ALA ARG TYR PHE GLY SER GLU GLY SEQRES 6 A 170 LYS SER SER ALA GLU LEU ASP ASN LEU PRO SER ASP ILE SEQRES 7 A 170 PHE TYR ALA TRP LEU ASN GLN PRO GLU ALA LEU GLN ALA SEQRES 8 A 170 PHE TRP GLN ALA GLN THR PRO ALA VAL ARG GLN LEU LEU SEQRES 9 A 170 GLU GLY TYR ALA ALA GLY PHE ASN ARG PHE LEU ARG GLU SEQRES 10 A 170 ALA ASP GLY LYS THR THR SER CYS LEU GLY GLN PRO TRP SEQRES 11 A 170 LEU ARG ALA ILE ALA THR ASP ASP LEU LEU ARG LEU THR SEQRES 12 A 170 ARG ARG LEU LEU VAL GLU GLY GLY VAL GLY GLN PHE ALA SEQRES 13 A 170 ASP ALA LEU VAL ALA ALA ALA PRO PRO GLY ALA GLU LYS SEQRES 14 A 170 VAL SEQRES 1 B 546 SER ASN ALA ILE ALA VAL GLY SER GLU ARG SER ALA ASP SEQRES 2 B 546 GLY LYS GLY MET LEU LEU ALA ASN PRO HIS PHE PRO TRP SEQRES 3 B 546 ASN GLY ALA MET ARG PHE TYR GLN MET HIS LEU THR ILE SEQRES 4 B 546 PRO GLY ARG LEU ASP VAL MET GLY ALA SER LEU PRO GLY SEQRES 5 B 546 LEU PRO VAL VAL ASN ILE GLY PHE SER ARG HIS LEU ALA SEQRES 6 B 546 TRP THR HIS THR VAL ASP THR SER SER HIS PHE THR LEU SEQRES 7 B 546 TYR ARG LEU ALA LEU ASP PRO LYS ASP PRO ARG ARG TYR SEQRES 8 B 546 LEU VAL ASP GLY ARG SER LEU PRO LEU GLU GLU LYS SER SEQRES 9 B 546 VAL ALA ILE GLU VAL ARG GLY ALA ASP GLY LYS LEU SER SEQRES 10 B 546 ARG VAL GLU HIS LYS VAL TYR GLN SER ILE TYR GLY PRO SEQRES 11 B 546 LEU VAL VAL TRP PRO GLY LYS LEU ASP TRP ASN ARG SER SEQRES 12 B 546 GLU ALA TYR ALA LEU ARG ASP ALA ASN LEU GLU ASN THR SEQRES 13 B 546 ARG VAL LEU GLN GLN TRP TYR SER ILE ASN GLN ALA SER SEQRES 14 B 546 ASP VAL ALA ASP LEU ARG ARG ARG VAL GLU ALA LEU GLN SEQRES 15 B 546 GLY ILE PRO TRP VAL ASN THR LEU ALA ALA ASP GLU GLN SEQRES 16 B 546 GLY ASN ALA LEU TYR MET ASN GLN SER VAL VAL PRO TYR SEQRES 17 B 546 LEU LYS PRO GLU LEU ILE PRO ALA CYS ALA ILE PRO GLN SEQRES 18 B 546 LEU VAL ALA GLU GLY LEU PRO ALA LEU GLN GLY GLN ASP SEQRES 19 B 546 SER ARG CYS ALA TRP SER ARG ASP PRO ALA ALA ALA GLN SEQRES 20 B 546 ALA GLY ILE THR PRO ALA ALA GLN LEU PRO VAL LEU LEU SEQRES 21 B 546 ARG ARG ASP PHE VAL GLN ASN SER ASN ASP SER ALA TRP SEQRES 22 B 546 LEU THR ASN PRO ALA SER PRO LEU GLN GLY PHE SER PRO SEQRES 23 B 546 LEU VAL SER GLN GLU LYS PRO ILE GLY PRO ARG ALA ARG SEQRES 24 B 546 TYR ALA LEU SER ARG LEU GLN GLY LYS GLN PRO LEU GLU SEQRES 25 B 546 ALA LYS THR LEU GLU GLU MET VAL THR ALA ASN HIS VAL SEQRES 26 B 546 PHE SER ALA ASP GLN VAL LEU PRO ASP LEU LEU ARG LEU SEQRES 27 B 546 CYS ARG ASP ASN GLN GLY GLU LYS SER LEU ALA ARG ALA SEQRES 28 B 546 CYS ALA ALA LEU ALA GLN TRP ASP ARG GLY ALA ASN LEU SEQRES 29 B 546 ASP SER GLY SER GLY PHE VAL TYR PHE GLN ARG PHE MET SEQRES 30 B 546 GLN ARG PHE ALA GLU LEU ASP GLY ALA TRP LYS GLU PRO SEQRES 31 B 546 PHE ASP ALA GLN ARG PRO LEU ASP THR PRO GLN GLY ILE SEQRES 32 B 546 ALA LEU ASP ARG PRO GLN VAL ALA THR GLN VAL ARG GLN SEQRES 33 B 546 ALA LEU ALA ASP ALA ALA ALA GLU VAL GLU LYS SER GLY SEQRES 34 B 546 ILE PRO ASP GLY ALA ARG TRP GLY ASP LEU GLN VAL SER SEQRES 35 B 546 THR ARG GLY GLN GLU ARG ILE ALA ILE PRO GLY GLY ASP SEQRES 36 B 546 GLY HIS PHE GLY VAL TYR ASN ALA ILE GLN SER VAL ARG SEQRES 37 B 546 LYS GLY ASP HIS LEU GLU VAL VAL GLY GLY THR SER TYR SEQRES 38 B 546 ILE GLN LEU VAL THR PHE PRO GLU GLU GLY PRO LYS ALA SEQRES 39 B 546 ARG GLY LEU LEU ALA PHE SER GLN SER SER ASP PRO ARG SEQRES 40 B 546 SER PRO HIS TYR ARG ASP GLN THR GLU LEU PHE SER ARG SEQRES 41 B 546 GLN GLN TRP GLN THR LEU PRO PHE SER ASP ARG GLN ILE SEQRES 42 B 546 ASP ALA ASP PRO GLN LEU GLN ARG LEU SER ILE ARG GLU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO B 801 4 HET EDO B 802 4 HET EDO B 803 4 HET EDO B 804 4 HET A08 B 805 17 HETNAM EDO 1,2-ETHANEDIOL HETNAM A08 (2S)-(4-CHLOROPHENYL)(6-CHLOROPYRIDIN-2-YL) HETNAM 2 A08 ETHANENITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 A08 C13 H8 CL2 N2 FORMUL 14 HOH *520(H2 O) HELIX 1 1 ALA A 39 GLY A 41 5 3 HELIX 2 2 ASP A 49 ARG A 77 1 29 HELIX 3 3 GLU A 79 GLY A 85 1 7 HELIX 4 4 ASP A 95 ASN A 107 1 13 HELIX 5 5 GLN A 108 ALA A 118 1 11 HELIX 6 6 THR A 120 ALA A 141 1 22 HELIX 7 7 ALA A 158 GLU A 172 1 15 HELIX 8 8 GLY A 173 GLN A 177 5 5 HELIX 9 9 PHE A 178 ALA A 185 1 8 HELIX 10 10 ASN B 243 ARG B 247 5 5 HELIX 11 11 ASN B 368 ASN B 371 5 4 HELIX 12 12 ARG B 373 ALA B 384 1 12 HELIX 13 13 ASP B 386 GLN B 398 1 13 HELIX 14 14 LYS B 426 GLU B 428 5 3 HELIX 15 15 LEU B 429 ALA B 434 1 6 HELIX 16 16 ILE B 435 GLU B 441 1 7 HELIX 17 17 ASP B 450 ALA B 454 5 5 HELIX 18 18 PRO B 468 LEU B 472 5 5 HELIX 19 19 GLY B 511 GLN B 522 1 12 HELIX 20 20 GLU B 528 ALA B 538 1 11 HELIX 21 21 VAL B 541 ASP B 557 1 17 HELIX 22 22 LEU B 564 TRP B 574 1 11 HELIX 23 23 SER B 584 ALA B 597 1 14 HELIX 24 24 ARG B 623 SER B 644 1 22 HELIX 25 25 ARG B 651 LEU B 655 1 5 HELIX 26 26 ASP B 671 GLY B 675 5 5 HELIX 27 27 ARG B 728 ARG B 736 1 9 HELIX 28 28 SER B 745 ALA B 751 1 7 SHEET 1 A10 VAL B 474 ARG B 477 0 SHEET 2 A10 ALA B 414 MET B 417 -1 N ALA B 414 O ARG B 477 SHEET 3 A10 VAL B 403 ASP B 409 -1 N THR B 405 O MET B 417 SHEET 4 A10 LEU B 280 VAL B 286 -1 N THR B 285 O ASN B 404 SHEET 5 A10 ILE B 274 PHE B 276 -1 N GLY B 275 O TRP B 282 SHEET 6 A10 LEU B 259 SER B 265 -1 N MET B 262 O PHE B 276 SHEET 7 A10 TYR B 249 ILE B 255 -1 N LEU B 253 O VAL B 261 SHEET 8 A10 VAL A 42 ARG A 46 1 N ILE A 45 O HIS B 252 SHEET 9 A10 ALA A 32 THR A 38 -1 N ARG A 36 O HIS A 44 SHEET 10 A10 GLN B 756 ARG B 761 -1 O LEU B 758 N ILE A 35 SHEET 1 B 6 PHE B 480 ASN B 483 0 SHEET 2 B 6 ASN B 218 VAL B 222 -1 N ALA B 221 O VAL B 481 SHEET 3 B 6 MET B 233 ASN B 237 -1 O MET B 233 N VAL B 222 SHEET 4 B 6 TYR B 697 THR B 702 -1 O GLN B 699 N ALA B 236 SHEET 5 B 6 LYS B 709 LEU B 714 -1 O LEU B 713 N ILE B 698 SHEET 6 B 6 GLN B 740 THR B 741 -1 O GLN B 740 N GLY B 712 SHEET 1 C 4 HIS B 239 PRO B 241 0 SHEET 2 C 4 HIS B 688 THR B 695 -1 O GLY B 694 N PHE B 240 SHEET 3 C 4 GLN B 656 ARG B 660 1 N VAL B 657 O LEU B 689 SHEET 4 C 4 GLU B 663 ALA B 666 -1 O ILE B 665 N SER B 658 SHEET 1 D 3 HIS B 239 PRO B 241 0 SHEET 2 D 3 HIS B 688 THR B 695 -1 O GLY B 694 N PHE B 240 SHEET 3 D 3 ILE B 680 LYS B 685 -1 N VAL B 683 O GLU B 690 SHEET 1 E 7 ARG B 312 PRO B 315 0 SHEET 2 E 7 ASP B 303 VAL B 309 -1 N TYR B 307 O LEU B 314 SHEET 3 E 7 PHE B 292 ASP B 300 -1 N ALA B 298 O LEU B 308 SHEET 4 E 7 GLU B 360 ASP B 366 -1 O ALA B 361 N LEU B 297 SHEET 5 E 7 GLY B 345 VAL B 348 -1 N VAL B 348 O TYR B 362 SHEET 6 E 7 LEU B 332 SER B 342 -1 N SER B 342 O GLY B 345 SHEET 7 E 7 GLU B 317 ARG B 326 -1 N ILE B 323 O VAL B 335 SHEET 1 F 4 ARG B 312 PRO B 315 0 SHEET 2 F 4 ASP B 303 VAL B 309 -1 N TYR B 307 O LEU B 314 SHEET 3 F 4 PHE B 292 ASP B 300 -1 N ALA B 298 O LEU B 308 SHEET 4 F 4 ALA B 445 GLN B 447 1 O LEU B 446 N ARG B 296 SHEET 1 G 2 TRP B 603 GLU B 605 0 SHEET 2 G 2 GLN B 617 ILE B 619 -1 O GLY B 618 N LYS B 604 SSBOND 1 CYS A 67 CYS A 148 1555 1555 2.04 SSBOND 2 CYS B 433 CYS B 453 1555 1555 2.08 SSBOND 3 CYS B 555 CYS B 568 1555 1555 2.04 CISPEP 1 THR B 615 PRO B 616 0 -0.03 SITE 1 AC1 4 ARG A 77 GLU A 79 HOH A 318 HOH A 447 SITE 1 AC2 5 ALA A 92 TYR A 103 ARG A 168 GLU A 172 SITE 2 AC2 5 HOH A 304 SITE 1 AC3 5 LEU A 97 PRO B 256 GLY B 257 HIS B 337 SITE 2 AC3 5 HOH B1009 SITE 1 AC4 5 ALA A 70 ILE A 73 TRP A 153 ARG A 155 SITE 2 AC4 5 HOH A 362 SITE 1 AC5 9 ALA A 47 LYS A 48 ALA A 184 HOH A 365 SITE 2 AC5 9 HOH A 433 HOH A 437 PRO B 256 PRO B 351 SITE 3 AC5 9 EDO B 801 SITE 1 AC6 5 LYS A 48 GLU A 93 LEU A 94 ASP A 95 SITE 2 AC6 5 ASP A 180 SITE 1 AC7 8 ASP A 34 ARG A 46 EDO A 205 HOH A 437 SITE 2 AC7 8 VAL B 349 PRO B 351 ARG B 757 HOH B1252 SITE 1 AC8 7 PHE B 240 PRO B 241 GLN B 681 GLY B 693 SITE 2 AC8 7 GLY B 694 HOH B1045 HOH B1248 SITE 1 AC9 6 GLN B 573 TRP B 574 ASP B 575 ASP B 581 SITE 2 AC9 6 SER B 582 GLY B 583 SITE 1 BC1 7 PRO B 704 GLU B 706 GLY B 707 PRO B 708 SITE 2 BC1 7 GLN B 748 HOH B 974 HOH B1059 SITE 1 BC2 11 THR A 166 LEU A 169 PHE B 240 LEU B 266 SITE 2 BC2 11 LEU B 269 HIS B 284 VAL B 374 TRP B 378 SITE 3 BC2 11 PRO B 401 TRP B 402 VAL B 403 CRYST1 120.280 166.020 94.190 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008314 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010617 0.00000