HEADER TRANSFERASE 09-APR-13 4K2R TITLE STRUCTURAL BASIS FOR ACTIVATION OF ZAP-70 BY PHOSPHORYLATION OF THE TITLE 2 SH2-KINASE LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ZAP-70; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 70 KDA ZETA-CHAIN ASSOCIATED PROTEIN, SYK-RELATED TYROSINE COMPND 5 KINASE; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZAP70, SRK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE DOMAIN, SH2 DOMAIN, TRANSFERASE, ATP BINDING, CYTOPLAM EXPDTA X-RAY DIFFRACTION AUTHOR Q.YAN,T.BARROS,P.R.VISPERAS,S.DEINDL,T.A.KADLECEK,A.WEISS,J.KURIYAN REVDAT 3 28-FEB-24 4K2R 1 REMARK SEQADV LINK REVDAT 2 22-MAY-13 4K2R 1 JRNL REVDAT 1 08-MAY-13 4K2R 0 JRNL AUTH Q.YAN,T.BARROS,P.R.VISPERAS,S.DEINDL,T.A.KADLECEK,A.WEISS, JRNL AUTH 2 J.KURIYAN JRNL TITL STRUCTURAL BASIS FOR ACTIVATION OF ZAP-70 BY PHOSPHORYLATION JRNL TITL 2 OF THE SH2-KINASE LINKER. JRNL REF MOL.CELL.BIOL. V. 33 2188 2013 JRNL REFN ISSN 0270-7306 JRNL PMID 23530057 JRNL DOI 10.1128/MCB.01637-12 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 11374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.36000 REMARK 3 B23 (A**2) : 0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.558 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.446 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 55.031 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.827 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4544 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6141 ; 1.552 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 4.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;31.940 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 803 ;19.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3422 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0917 -2.4825 23.3524 REMARK 3 T TENSOR REMARK 3 T11: 0.1524 T22: 0.0566 REMARK 3 T33: 0.1941 T12: -0.0151 REMARK 3 T13: -0.0503 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 6.6073 L22: 7.1417 REMARK 3 L33: 7.9564 L12: -1.4620 REMARK 3 L13: 0.6181 L23: -1.0923 REMARK 3 S TENSOR REMARK 3 S11: 0.3767 S12: -0.2589 S13: -0.5618 REMARK 3 S21: -0.0498 S22: -0.0327 S23: 0.2929 REMARK 3 S31: 0.2349 S32: -0.1225 S33: -0.3440 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5499 3.6825 23.0775 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0454 REMARK 3 T33: 0.1518 T12: 0.0210 REMARK 3 T13: 0.0219 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 3.5523 L22: 5.9814 REMARK 3 L33: 4.4126 L12: -0.7022 REMARK 3 L13: 1.1475 L23: -1.2846 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0210 S13: -0.1925 REMARK 3 S21: 0.1342 S22: -0.0770 S23: -0.2614 REMARK 3 S31: 0.1846 S32: 0.1237 S33: 0.1151 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4188 10.7647 0.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.2189 REMARK 3 T33: 0.0915 T12: -0.0279 REMARK 3 T13: 0.0254 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.9017 L22: 3.5872 REMARK 3 L33: 2.7527 L12: -1.7050 REMARK 3 L13: -1.6289 L23: 2.3832 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.1313 S13: 0.0079 REMARK 3 S21: -0.2339 S22: -0.0520 S23: 0.2323 REMARK 3 S31: -0.1165 S32: -0.2990 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8860 21.4511 12.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1752 REMARK 3 T33: 0.1664 T12: -0.0144 REMARK 3 T13: 0.0848 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 14.4163 L22: 5.1897 REMARK 3 L33: 3.9394 L12: 2.1074 REMARK 3 L13: 3.3535 L23: -2.7065 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: 0.2809 S13: 1.0266 REMARK 3 S21: 0.0788 S22: -0.1279 S23: 0.2233 REMARK 3 S31: -0.3499 S32: 0.3418 S33: -0.0680 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8802 8.7172 -0.4168 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.3162 REMARK 3 T33: 0.1691 T12: 0.0333 REMARK 3 T13: -0.0678 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.2590 L22: 2.1151 REMARK 3 L33: 2.7420 L12: -0.8920 REMARK 3 L13: -1.8411 L23: 1.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.1978 S13: 0.0369 REMARK 3 S21: -0.2711 S22: -0.0952 S23: 0.0894 REMARK 3 S31: -0.1305 S32: -0.2535 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2249 -7.5677 -32.9716 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 0.3439 REMARK 3 T33: 0.0981 T12: -0.0774 REMARK 3 T13: -0.0084 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 3.4846 L22: 9.5662 REMARK 3 L33: 4.1951 L12: 1.2186 REMARK 3 L13: -0.8855 L23: -0.1959 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.1261 S13: -0.4827 REMARK 3 S21: -0.3754 S22: -0.1519 S23: -0.6129 REMARK 3 S31: 0.4170 S32: -0.0329 S33: 0.1936 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7460 -5.8274 -16.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0876 REMARK 3 T33: 0.1379 T12: 0.0377 REMARK 3 T13: 0.0586 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.6727 L22: 3.6668 REMARK 3 L33: 7.4008 L12: 0.1183 REMARK 3 L13: 0.5981 L23: 0.9639 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: 0.1033 S13: -0.2152 REMARK 3 S21: -0.0553 S22: 0.0929 S23: -0.1322 REMARK 3 S31: 0.3532 S32: 0.1025 S33: -0.0640 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 480 A 538 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8265 -16.0314 -11.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.6005 T22: 0.2157 REMARK 3 T33: 0.4649 T12: 0.0427 REMARK 3 T13: 0.1981 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 2.1697 L22: 5.8470 REMARK 3 L33: 2.5665 L12: -3.0785 REMARK 3 L13: 0.9355 L23: 0.3068 REMARK 3 S TENSOR REMARK 3 S11: 0.3096 S12: 0.3589 S13: 0.0070 REMARK 3 S21: -0.4426 S22: -0.2228 S23: -0.2276 REMARK 3 S31: 0.6459 S32: 0.4901 S33: -0.0867 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 539 A 606 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7553 -12.5947 -1.6503 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.1633 REMARK 3 T33: 0.3074 T12: 0.0020 REMARK 3 T13: -0.1147 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 4.7701 L22: 4.3160 REMARK 3 L33: 1.6558 L12: -1.5206 REMARK 3 L13: -0.7661 L23: -0.7115 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: -0.6113 S13: -0.1543 REMARK 3 S21: 0.2488 S22: 0.1126 S23: -0.5975 REMARK 3 S31: 0.3101 S32: 0.3764 S33: 0.0440 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 607 A 614 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9381 16.6969 -4.4299 REMARK 3 T TENSOR REMARK 3 T11: 1.9604 T22: 0.3616 REMARK 3 T33: 0.4564 T12: 0.1319 REMARK 3 T13: 0.0009 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 13.8604 L22: 50.5400 REMARK 3 L33: 1.9200 L12: -26.3439 REMARK 3 L13: -5.0277 L23: 9.3491 REMARK 3 S TENSOR REMARK 3 S11: 1.7030 S12: 0.8587 S13: 0.2074 REMARK 3 S21: -2.3035 S22: -1.6646 S23: -0.4330 REMARK 3 S31: -1.0200 S32: -0.3245 S33: -0.0384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4K2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11992 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K, PH 9.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 ASN A 261 REMARK 465 ALA A 262 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 THR A 269 REMARK 465 LEU A 270 REMARK 465 PRO A 271 REMARK 465 ALA A 272 REMARK 465 HIS A 273 REMARK 465 PRO A 274 REMARK 465 SER A 275 REMARK 465 THR A 276 REMARK 465 LEU A 277 REMARK 465 THR A 278 REMARK 465 HIS A 279 REMARK 465 PRO A 280 REMARK 465 GLN A 281 REMARK 465 ARG A 282 REMARK 465 ARG A 283 REMARK 465 ILE A 284 REMARK 465 ASP A 285 REMARK 465 THR A 286 REMARK 465 LEU A 287 REMARK 465 ASN A 288 REMARK 465 SER A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 TYR A 292 REMARK 465 THR A 293 REMARK 465 PRO A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 ALA A 297 REMARK 465 ARG A 298 REMARK 465 ILE A 299 REMARK 465 THR A 300 REMARK 465 SER A 301 REMARK 465 PRO A 302 REMARK 465 LYS A 484 REMARK 465 ALA A 485 REMARK 465 LEU A 486 REMARK 465 GLY A 487 REMARK 465 ALA A 488 REMARK 465 ASP A 489 REMARK 465 ASP A 490 REMARK 465 SER A 491 REMARK 465 TYR A 492 REMARK 465 TYR A 493 REMARK 465 THR A 494 REMARK 465 ALA A 495 REMARK 465 ARG A 496 REMARK 465 SER A 497 REMARK 465 ALA A 498 REMARK 465 GLY A 499 REMARK 465 LYS A 500 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 85 OE1 OE2 REMARK 470 ARG A 128 CZ NH1 NH2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 ASP A 327 CG OD1 OD2 REMARK 470 GLU A 431 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 596 CD1 LEU A 600 1.37 REMARK 500 O GLU A 194 OG1 THR A 197 1.92 REMARK 500 O HIS A 459 OD1 ASP A 521 2.00 REMARK 500 O TYR A 164 ND2 ASN A 256 2.03 REMARK 500 O ASN A 461 ND2 ASN A 466 2.08 REMARK 500 OG SER A 351 NH2 ARG A 353 2.10 REMARK 500 OG SER A 42 OE2 GLU A 62 2.13 REMARK 500 NZ LYS A 504 O TYR A 540 2.17 REMARK 500 O ALA A 570 OD1 ASP A 574 2.17 REMARK 500 O ILE A 223 N GLY A 226 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 443 CG HIS A 443 CD2 0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 72 118.21 -39.23 REMARK 500 ARG A 99 -80.41 -126.71 REMARK 500 PRO A 110 150.04 -47.98 REMARK 500 LYS A 132 60.97 32.99 REMARK 500 SER A 167 44.52 -143.73 REMARK 500 GLN A 182 54.22 -91.08 REMARK 500 GLU A 194 107.99 -51.48 REMARK 500 LYS A 251 -88.36 -123.45 REMARK 500 TYR A 319 47.74 -88.99 REMARK 500 ASP A 327 72.35 -114.19 REMARK 500 LYS A 328 78.35 -108.26 REMARK 500 GLU A 376 -58.46 73.45 REMARK 500 ALA A 378 59.75 -68.55 REMARK 500 ALA A 387 -32.92 -39.19 REMARK 500 ALA A 407 -123.21 -145.45 REMARK 500 ALA A 417 69.66 -108.91 REMARK 500 LYS A 429 34.93 -99.67 REMARK 500 ASN A 461 52.42 -118.51 REMARK 500 PRO A 502 10.24 -67.79 REMARK 500 GLU A 509 -8.68 -54.74 REMARK 500 LYS A 542 0.76 90.85 REMARK 500 LYS A 544 160.94 177.52 REMARK 500 PRO A 565 159.10 -48.65 REMARK 500 TRP A 576 40.22 -104.84 REMARK 500 SER A 608 -164.07 -104.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 466 OD1 REMARK 620 2 ASP A 479 OD2 80.4 REMARK 620 3 ANP A 702 O2A 156.4 78.5 REMARK 620 4 ANP A 702 O2B 81.1 120.5 100.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 703 DBREF 4K2R A 1 606 UNP P43403 ZAP70_HUMAN 1 606 SEQADV 4K2R ASN A 461 UNP P43403 ASP 461 ENGINEERED MUTATION SEQADV 4K2R GLY A 607 UNP P43403 EXPRESSION TAG SEQADV 4K2R SER A 608 UNP P43403 EXPRESSION TAG SEQADV 4K2R GLY A 609 UNP P43403 EXPRESSION TAG SEQADV 4K2R LEU A 610 UNP P43403 EXPRESSION TAG SEQADV 4K2R GLU A 611 UNP P43403 EXPRESSION TAG SEQADV 4K2R VAL A 612 UNP P43403 EXPRESSION TAG SEQADV 4K2R LEU A 613 UNP P43403 EXPRESSION TAG SEQADV 4K2R PHE A 614 UNP P43403 EXPRESSION TAG SEQRES 1 A 614 MET PRO ASP PRO ALA ALA HIS LEU PRO PHE PHE TYR GLY SEQRES 2 A 614 SER ILE SER ARG ALA GLU ALA GLU GLU HIS LEU LYS LEU SEQRES 3 A 614 ALA GLY MET ALA ASP GLY LEU PHE LEU LEU ARG GLN CYS SEQRES 4 A 614 LEU ARG SER LEU GLY GLY TYR VAL LEU SER LEU VAL HIS SEQRES 5 A 614 ASP VAL ARG PHE HIS HIS PHE PRO ILE GLU ARG GLN LEU SEQRES 6 A 614 ASN GLY THR TYR ALA ILE ALA GLY GLY LYS ALA HIS CYS SEQRES 7 A 614 GLY PRO ALA GLU LEU CYS GLU PHE TYR SER ARG ASP PRO SEQRES 8 A 614 ASP GLY LEU PRO CYS ASN LEU ARG LYS PRO CYS ASN ARG SEQRES 9 A 614 PRO SER GLY LEU GLU PRO GLN PRO GLY VAL PHE ASP CYS SEQRES 10 A 614 LEU ARG ASP ALA MET VAL ARG ASP TYR VAL ARG GLN THR SEQRES 11 A 614 TRP LYS LEU GLU GLY GLU ALA LEU GLU GLN ALA ILE ILE SEQRES 12 A 614 SER GLN ALA PRO GLN VAL GLU LYS LEU ILE ALA THR THR SEQRES 13 A 614 ALA HIS GLU ARG MET PRO TRP TYR HIS SER SER LEU THR SEQRES 14 A 614 ARG GLU GLU ALA GLU ARG LYS LEU TYR SER GLY ALA GLN SEQRES 15 A 614 THR ASP GLY LYS PHE LEU LEU ARG PRO ARG LYS GLU GLN SEQRES 16 A 614 GLY THR TYR ALA LEU SER LEU ILE TYR GLY LYS THR VAL SEQRES 17 A 614 TYR HIS TYR LEU ILE SER GLN ASP LYS ALA GLY LYS TYR SEQRES 18 A 614 CYS ILE PRO GLU GLY THR LYS PHE ASP THR LEU TRP GLN SEQRES 19 A 614 LEU VAL GLU TYR LEU LYS LEU LYS ALA ASP GLY LEU ILE SEQRES 20 A 614 TYR CYS LEU LYS GLU ALA CYS PRO ASN SER SER ALA SER SEQRES 21 A 614 ASN ALA SER GLY ALA ALA ALA PRO THR LEU PRO ALA HIS SEQRES 22 A 614 PRO SER THR LEU THR HIS PRO GLN ARG ARG ILE ASP THR SEQRES 23 A 614 LEU ASN SER ASP GLY TYR THR PRO GLU PRO ALA ARG ILE SEQRES 24 A 614 THR SER PRO ASP LYS PRO ARG PRO MET PRO MET ASP THR SEQRES 25 A 614 SER VAL TYR GLU SER PRO TYR SER ASP PRO GLU GLU LEU SEQRES 26 A 614 LYS ASP LYS LYS LEU PHE LEU LYS ARG ASP ASN LEU LEU SEQRES 27 A 614 ILE ALA ASP ILE GLU LEU GLY CYS GLY ASN PHE GLY SER SEQRES 28 A 614 VAL ARG GLN GLY VAL TYR ARG MET ARG LYS LYS GLN ILE SEQRES 29 A 614 ASP VAL ALA ILE LYS VAL LEU LYS GLN GLY THR GLU LYS SEQRES 30 A 614 ALA ASP THR GLU GLU MET MET ARG GLU ALA GLN ILE MET SEQRES 31 A 614 HIS GLN LEU ASP ASN PRO TYR ILE VAL ARG LEU ILE GLY SEQRES 32 A 614 VAL CYS GLN ALA GLU ALA LEU MET LEU VAL MET GLU MET SEQRES 33 A 614 ALA GLY GLY GLY PRO LEU HIS LYS PHE LEU VAL GLY LYS SEQRES 34 A 614 ARG GLU GLU ILE PRO VAL SER ASN VAL ALA GLU LEU LEU SEQRES 35 A 614 HIS GLN VAL SER MET GLY MET LYS TYR LEU GLU GLU LYS SEQRES 36 A 614 ASN PHE VAL HIS ARG ASN LEU ALA ALA ARG ASN VAL LEU SEQRES 37 A 614 LEU VAL ASN ARG HIS TYR ALA LYS ILE SER ASP PHE GLY SEQRES 38 A 614 LEU SER LYS ALA LEU GLY ALA ASP ASP SER TYR TYR THR SEQRES 39 A 614 ALA ARG SER ALA GLY LYS TRP PRO LEU LYS TRP TYR ALA SEQRES 40 A 614 PRO GLU CYS ILE ASN PHE ARG LYS PHE SER SER ARG SER SEQRES 41 A 614 ASP VAL TRP SER TYR GLY VAL THR MET TRP GLU ALA LEU SEQRES 42 A 614 SER TYR GLY GLN LYS PRO TYR LYS LYS MET LYS GLY PRO SEQRES 43 A 614 GLU VAL MET ALA PHE ILE GLU GLN GLY LYS ARG MET GLU SEQRES 44 A 614 CYS PRO PRO GLU CYS PRO PRO GLU LEU TYR ALA LEU MET SEQRES 45 A 614 SER ASP CYS TRP ILE TYR LYS TRP GLU ASP ARG PRO ASP SEQRES 46 A 614 PHE LEU THR VAL GLU GLN ARG MET ARG ALA CYS TYR TYR SEQRES 47 A 614 SER LEU ALA SER LYS VAL GLU GLY GLY SER GLY LEU GLU SEQRES 48 A 614 VAL LEU PHE HET MG A 701 1 HET ANP A 702 31 HET PO4 A 703 5 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM PO4 PHOSPHATE ION FORMUL 2 MG MG 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 PO4 O4 P 3- HELIX 1 1 SER A 16 ALA A 27 1 12 HELIX 2 2 GLY A 79 ASP A 90 1 12 HELIX 3 3 GLY A 113 TRP A 131 1 19 HELIX 4 4 GLY A 135 THR A 156 1 22 HELIX 5 5 ALA A 157 MET A 161 5 5 HELIX 6 6 THR A 169 GLY A 180 1 12 HELIX 7 7 THR A 231 LYS A 240 1 10 HELIX 8 8 MET A 308 THR A 312 5 5 HELIX 9 9 SER A 317 SER A 320 5 4 HELIX 10 10 ASP A 321 ASP A 327 1 7 HELIX 11 11 LYS A 333 ASP A 335 5 3 HELIX 12 12 ASP A 379 HIS A 391 1 13 HELIX 13 13 PRO A 421 VAL A 427 1 7 HELIX 14 14 PRO A 434 LYS A 455 1 22 HELIX 15 15 ALA A 463 ARG A 465 5 3 HELIX 16 16 ALA A 507 ARG A 514 1 8 HELIX 17 17 SER A 517 SER A 534 1 18 HELIX 18 18 GLY A 545 GLN A 554 1 10 HELIX 19 19 PRO A 565 CYS A 575 1 11 HELIX 20 20 ASP A 585 SER A 602 1 18 SHEET 1 A 5 TYR A 69 ILE A 71 0 SHEET 2 A 5 ARG A 55 ARG A 63 -1 N GLU A 62 O ALA A 70 SHEET 3 A 5 TYR A 46 HIS A 52 -1 N LEU A 48 O PHE A 59 SHEET 4 A 5 LEU A 33 GLN A 38 -1 N ARG A 37 O VAL A 47 SHEET 5 A 5 LYS A 100 PRO A 101 1 O LYS A 100 N PHE A 34 SHEET 1 B 5 PHE A 187 PRO A 191 0 SHEET 2 B 5 TYR A 198 TYR A 204 -1 O ALA A 199 N ARG A 190 SHEET 3 B 5 THR A 207 GLN A 215 -1 O TYR A 209 N LEU A 202 SHEET 4 B 5 TYR A 221 CYS A 222 -1 O CYS A 222 N SER A 214 SHEET 5 B 5 LYS A 228 PHE A 229 -1 O PHE A 229 N TYR A 221 SHEET 1 C 5 LEU A 337 CYS A 346 0 SHEET 2 C 5 GLY A 350 ARG A 358 -1 O VAL A 356 N LEU A 338 SHEET 3 C 5 GLN A 363 LEU A 371 -1 O ILE A 364 N TYR A 357 SHEET 4 C 5 LEU A 410 GLU A 415 -1 O LEU A 412 N LYS A 369 SHEET 5 C 5 LEU A 401 GLN A 406 -1 N CYS A 405 O MET A 411 SHEET 1 D 2 VAL A 467 ASN A 471 0 SHEET 2 D 2 TYR A 474 ILE A 477 -1 O TYR A 474 N VAL A 470 LINK OD1 ASN A 466 MG MG A 701 1555 1555 2.58 LINK OD2 ASP A 479 MG MG A 701 1555 1555 2.43 LINK MG MG A 701 O2A ANP A 702 1555 1555 2.26 LINK MG MG A 701 O2B ANP A 702 1555 1555 2.39 SITE 1 AC1 4 ARG A 465 ASN A 466 ASP A 479 ANP A 702 SITE 1 AC2 14 LEU A 344 GLY A 347 PHE A 349 VAL A 352 SITE 2 AC2 14 ALA A 367 LYS A 369 GLU A 415 ALA A 417 SITE 3 AC2 14 PRO A 421 ARG A 465 ASN A 466 LEU A 468 SITE 4 AC2 14 ASP A 479 MG A 701 SITE 1 AC3 4 ARG A 170 ARG A 190 ARG A 192 ALA A 199 CRYST1 48.530 53.150 68.960 106.10 93.26 104.40 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020606 0.005291 0.002903 0.00000 SCALE2 0.000000 0.019425 0.006140 0.00000 SCALE3 0.000000 0.000000 0.015233 0.00000