data_4K31 # _entry.id 4K31 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4K31 pdb_00004k31 10.2210/pdb4k31/pdb NDB NA2343 ? ? RCSB RCSB078827 ? ? WWPDB D_1000078827 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4K32 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4K31 _pdbx_database_status.recvd_initial_deposition_date 2013-04-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shalev, M.' 1 'Kondo, J.' 2 'Adir, N.' 3 'Baasov, T.' 4 # _citation.id primary _citation.title 'Identification of the molecular attributes required for aminoglycoside activity against Leishmania.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 13333 _citation.page_last 13338 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23898171 _citation.pdbx_database_id_DOI 10.1073/pnas.1307365110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shalev, M.' 1 ? primary 'Kondo, J.' 2 ? primary 'Kopelyanskiy, D.' 3 ? primary 'Jaffe, C.L.' 4 ? primary 'Adir, N.' 5 ? primary 'Baasov, T.' 6 ? # _cell.entry_id 4K31 _cell.length_a 32.790 _cell.length_b 32.790 _cell.length_c 107.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K31 _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') ; 7356.393 2 ? ? ? ? 2 non-polymer syn APRAMYCIN 539.577 4 ? ? ? ? 3 water nat water 18.015 209 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCGUUCCGGAAAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCGUUCCGGAAAAGUCGC _entity_poly.pdbx_strand_id B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 G n 1 9 U n 1 10 U n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific Leishmania _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 38568 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4K31 _struct_ref.pdbx_db_accession 4K31 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4K31 B 1 ? 23 ? 4K31 1 ? 23 ? 1 23 2 1 4K31 C 1 ? 23 ? 4K31 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AM2 non-polymer . APRAMYCIN ;NEBRAMYCIN II; 4-O-(3ALPHA-AMINO-6ALPHA-((4-AMINO-4-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY)-2,3,4,5ABETA,6,7,8,8AALPHA-OCTAHYDRO-8BETA-HYDROXY-7BETA-(METHYLAMINO)PYRANO(3,2-B)PYRAN-2ALPHA-YL)-2-DEOXY-D-STREPTAMINE ; 'C21 H41 N5 O11' 539.577 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 4K31 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;50 mM Na cacodylate, 1 mM spermine tetrahydrochloride, 1% 2-methyl-2,4-pentadiol (vs. 40% reservoir), 100-250 mM NaCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9394 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9394 # _reflns.entry_id 4K31 _reflns.observed_criterion_sigma_I 21.5 _reflns.observed_criterion_sigma_F 21.5 _reflns.d_resolution_low 35.8 _reflns.d_resolution_high 1.4 _reflns.number_obs 23325 _reflns.number_all 67545 _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.42 _reflns_shell.d_res_low 1.49 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98 _reflns_shell.Rmerge_I_obs 0.137 _reflns_shell.meanI_over_sigI_obs 5.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4K31 _refine.ls_number_reflns_obs 23271 _refine.ls_number_reflns_all 22089 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.510 _refine.ls_d_res_high 1.415 _refine.ls_percent_reflns_obs 94.51 _refine.ls_R_factor_obs 0.2277 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2258 _refine.ls_R_factor_R_free 0.2644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.11 _refine.ls_number_reflns_R_free 1190 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.600 _refine.solvent_model_param_bsol 80.000 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'pdb entry 2G5K' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 21.40 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 938 _refine_hist.pdbx_number_atoms_ligand 148 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 1295 _refine_hist.d_res_high 1.415 _refine_hist.d_res_low 19.510 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1208 ? 'X-RAY DIFFRACTION' f_angle_d 0.976 ? ? 1872 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.785 ? ? 638 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.051 ? ? 288 ? 'X-RAY DIFFRACTION' f_plane_restr 0.009 ? ? 44 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4151 1.4795 2826 0.2456 98.00 0.2827 . . 165 . . . . 'X-RAY DIFFRACTION' . 1.4795 1.5574 2929 0.2222 100.00 0.2323 . . 167 . . . . 'X-RAY DIFFRACTION' . 1.5574 1.6549 2921 0.2165 100.00 0.2402 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.6549 1.7826 2908 0.2077 100.00 0.2234 . . 157 . . . . 'X-RAY DIFFRACTION' . 1.7826 1.9619 2941 0.2114 100.00 0.2291 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.9619 2.2454 2904 0.2052 100.00 0.2239 . . 167 . . . . 'X-RAY DIFFRACTION' . 2.2454 2.8276 2912 0.2219 99.00 0.2846 . . 159 . . . . 'X-RAY DIFFRACTION' . 2.8276 19.5116 1740 0.2566 60.00 0.3155 . . 94 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4K31 _struct.title 'Crystal structure of apramycin bound to the leishmanial rRNA A-site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K31 _struct_keywords.pdbx_keywords RNA/antibiotic _struct_keywords.text 'rRNA duplex, Ribosomal A-site, Aminoglycoside, Ribosome, RNA, RNA-antibiotic complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 3 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 3 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 3 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? B C 4 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? B C 4 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? B C 4 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 5 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 5 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 5 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 20 O4 ? ? B U 6 C U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 6 O2 ? ? ? 1_555 B U 20 N3 ? ? B U 6 C U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 7 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 7 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 7 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N1 ? ? ? 1_555 B A 17 N1 ? ? B G 8 C A 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 B A 17 N6 ? ? B G 8 C A 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 16 N1 ? ? B U 9 C A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 16 N6 ? ? B U 9 C A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 N3 ? ? ? 1_555 B A 15 N1 ? ? B U 10 C A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 10 O4 ? ? ? 1_555 B A 15 N6 ? ? B U 10 C A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? B C 11 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? B C 11 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? B C 11 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? B C 12 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? B C 12 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? B C 12 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? B G 13 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? B G 13 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? B G 13 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? B G 14 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? B G 14 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? B G 14 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 15 N1 ? ? ? 1_555 B U 10 N3 ? ? B A 15 C U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N6 ? ? ? 1_555 B U 10 O4 ? ? B A 15 C U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 16 N1 ? ? ? 1_555 B U 9 N3 ? ? B A 16 C U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 16 N6 ? ? ? 1_555 B U 9 O4 ? ? B A 16 C U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 17 N1 ? ? ? 1_555 B G 8 N1 ? ? B A 17 C G 8 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? A A 17 N6 ? ? ? 1_555 B G 8 O6 ? ? B A 17 C G 8 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? B G 19 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? B G 19 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? B G 19 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O2 ? ? B U 20 C U 6 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A U 20 O4 ? ? ? 1_555 B U 6 N3 ? ? B U 20 C U 6 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog44 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? B C 21 C G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? B C 21 C G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? B C 21 C G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? B G 22 C C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? B G 22 C C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? B G 22 C C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? B C 23 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? B C 23 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? B C 23 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B AM2 101 ? 13 'BINDING SITE FOR RESIDUE AM2 B 101' AC2 Software B AM2 102 ? 24 'BINDING SITE FOR RESIDUE AM2 B 102' AC3 Software C AM2 101 ? 23 'BINDING SITE FOR RESIDUE AM2 C 101' AC4 Software C AM2 102 ? 17 'BINDING SITE FOR RESIDUE AM2 C 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 C A 4 ? C B 4 . ? 1_555 ? 2 AC1 13 G A 5 ? G B 5 . ? 1_555 ? 3 AC1 13 U A 6 ? U B 6 . ? 1_555 ? 4 AC1 13 G A 8 ? G B 8 . ? 1_555 ? 5 AC1 13 HOH G . ? HOH B 207 . ? 1_555 ? 6 AC1 13 HOH G . ? HOH B 211 . ? 1_555 ? 7 AC1 13 HOH G . ? HOH B 239 . ? 1_555 ? 8 AC1 13 HOH G . ? HOH B 258 . ? 1_555 ? 9 AC1 13 HOH G . ? HOH B 295 . ? 1_555 ? 10 AC1 13 A B 17 ? A C 17 . ? 1_555 ? 11 AC1 13 G B 19 ? G C 19 . ? 1_555 ? 12 AC1 13 U B 20 ? U C 20 . ? 1_555 ? 13 AC1 13 HOH H . ? HOH C 219 . ? 1_555 ? 14 AC2 24 U A 9 ? U B 9 . ? 1_555 ? 15 AC2 24 U A 10 ? U B 10 . ? 1_555 ? 16 AC2 24 C A 11 ? C B 11 . ? 1_555 ? 17 AC2 24 HOH G . ? HOH B 205 . ? 1_555 ? 18 AC2 24 HOH G . ? HOH B 225 . ? 1_555 ? 19 AC2 24 HOH G . ? HOH B 232 . ? 1_555 ? 20 AC2 24 HOH G . ? HOH B 233 . ? 1_555 ? 21 AC2 24 HOH G . ? HOH B 235 . ? 1_555 ? 22 AC2 24 HOH G . ? HOH B 240 . ? 1_555 ? 23 AC2 24 HOH G . ? HOH B 253 . ? 1_555 ? 24 AC2 24 HOH G . ? HOH B 260 . ? 1_555 ? 25 AC2 24 HOH G . ? HOH B 274 . ? 1_555 ? 26 AC2 24 HOH G . ? HOH B 287 . ? 1_555 ? 27 AC2 24 HOH G . ? HOH B 297 . ? 1_555 ? 28 AC2 24 HOH G . ? HOH B 301 . ? 1_555 ? 29 AC2 24 HOH G . ? HOH B 308 . ? 1_555 ? 30 AC2 24 G B 8 ? G C 8 . ? 1_555 ? 31 AC2 24 U B 9 ? U C 9 . ? 1_555 ? 32 AC2 24 C B 23 ? C C 23 . ? 2_545 ? 33 AC2 24 HOH H . ? HOH C 201 . ? 1_555 ? 34 AC2 24 HOH H . ? HOH C 210 . ? 1_555 ? 35 AC2 24 HOH H . ? HOH C 215 . ? 1_555 ? 36 AC2 24 HOH H . ? HOH C 274 . ? 1_555 ? 37 AC2 24 HOH H . ? HOH C 280 . ? 1_555 ? 38 AC3 23 G A 8 ? G B 8 . ? 1_555 ? 39 AC3 23 U A 9 ? U B 9 . ? 1_555 ? 40 AC3 23 C A 23 ? C B 23 . ? 3_544 ? 41 AC3 23 HOH G . ? HOH B 210 . ? 1_555 ? 42 AC3 23 HOH G . ? HOH B 294 . ? 1_555 ? 43 AC3 23 HOH G . ? HOH B 308 . ? 1_555 ? 44 AC3 23 U B 9 ? U C 9 . ? 1_555 ? 45 AC3 23 U B 10 ? U C 10 . ? 1_555 ? 46 AC3 23 C B 11 ? C C 11 . ? 1_555 ? 47 AC3 23 HOH H . ? HOH C 202 . ? 1_555 ? 48 AC3 23 HOH H . ? HOH C 204 . ? 1_555 ? 49 AC3 23 HOH H . ? HOH C 205 . ? 1_555 ? 50 AC3 23 HOH H . ? HOH C 225 . ? 1_555 ? 51 AC3 23 HOH H . ? HOH C 236 . ? 1_555 ? 52 AC3 23 HOH H . ? HOH C 238 . ? 1_555 ? 53 AC3 23 HOH H . ? HOH C 240 . ? 1_555 ? 54 AC3 23 HOH H . ? HOH C 257 . ? 1_555 ? 55 AC3 23 HOH H . ? HOH C 262 . ? 1_555 ? 56 AC3 23 HOH H . ? HOH C 269 . ? 1_555 ? 57 AC3 23 HOH H . ? HOH C 270 . ? 1_555 ? 58 AC3 23 HOH H . ? HOH C 275 . ? 1_555 ? 59 AC3 23 HOH H . ? HOH C 283 . ? 1_555 ? 60 AC3 23 HOH H . ? HOH C 295 . ? 1_555 ? 61 AC4 17 G A 14 ? G B 14 . ? 1_555 ? 62 AC4 17 A A 17 ? A B 17 . ? 1_555 ? 63 AC4 17 G A 19 ? G B 19 . ? 1_555 ? 64 AC4 17 U A 20 ? U B 20 . ? 1_555 ? 65 AC4 17 HOH G . ? HOH B 218 . ? 1_555 ? 66 AC4 17 HOH G . ? HOH B 227 . ? 1_555 ? 67 AC4 17 C B 4 ? C C 4 . ? 1_555 ? 68 AC4 17 G B 5 ? G C 5 . ? 1_555 ? 69 AC4 17 U B 6 ? U C 6 . ? 1_555 ? 70 AC4 17 G B 8 ? G C 8 . ? 1_555 ? 71 AC4 17 HOH H . ? HOH C 216 . ? 1_555 ? 72 AC4 17 HOH H . ? HOH C 239 . ? 1_555 ? 73 AC4 17 HOH H . ? HOH C 247 . ? 1_555 ? 74 AC4 17 HOH H . ? HOH C 278 . ? 1_555 ? 75 AC4 17 HOH H . ? HOH C 282 . ? 1_555 ? 76 AC4 17 HOH H . ? HOH C 284 . ? 1_555 ? 77 AC4 17 HOH H . ? HOH C 296 . ? 1_555 ? # _database_PDB_matrix.entry_id 4K31 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4K31 _atom_sites.fract_transf_matrix[1][1] 0.030497 _atom_sites.fract_transf_matrix[1][2] 0.017608 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035215 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009311 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? B . n A 1 2 U 2 2 2 U U B . n A 1 3 G 3 3 3 G G B . n A 1 4 C 4 4 4 C C B . n A 1 5 G 5 5 5 G G B . n A 1 6 U 6 6 6 U U B . n A 1 7 C 7 7 7 C C B . n A 1 8 G 8 8 8 G G B . n A 1 9 U 9 9 9 U U B . n A 1 10 U 10 10 10 U U B . n A 1 11 C 11 11 11 C C B . n A 1 12 C 12 12 12 C C B . n A 1 13 G 13 13 13 G G B . n A 1 14 G 14 14 14 G G B . n A 1 15 A 15 15 15 A A B . n A 1 16 A 16 16 16 A A B . n A 1 17 A 17 17 17 A A B . n A 1 18 A 18 18 18 A A B . n A 1 19 G 19 19 19 G G B . n A 1 20 U 20 20 20 U U B . n A 1 21 C 21 21 21 C C B . n A 1 22 G 22 22 22 G G B . n A 1 23 C 23 23 23 C C B . n B 1 1 U 1 1 ? ? ? C . n B 1 2 U 2 2 2 U U C . n B 1 3 G 3 3 3 G G C . n B 1 4 C 4 4 4 C C C . n B 1 5 G 5 5 5 G G C . n B 1 6 U 6 6 6 U U C . n B 1 7 C 7 7 7 C C C . n B 1 8 G 8 8 8 G G C . n B 1 9 U 9 9 9 U U C . n B 1 10 U 10 10 10 U U C . n B 1 11 C 11 11 11 C C C . n B 1 12 C 12 12 12 C C C . n B 1 13 G 13 13 13 G G C . n B 1 14 G 14 14 14 G G C . n B 1 15 A 15 15 15 A A C . n B 1 16 A 16 16 16 A A C . n B 1 17 A 17 17 17 A A C . n B 1 18 A 18 18 18 A A C . n B 1 19 G 19 19 19 G G C . n B 1 20 U 20 20 20 U U C . n B 1 21 C 21 21 21 C C C . n B 1 22 G 22 22 22 G G C . n B 1 23 C 23 23 23 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AM2 1 101 51 AM2 AM2 B . D 2 AM2 1 102 54 AM2 AM2 B . E 2 AM2 1 101 52 AM2 AM2 C . F 2 AM2 1 102 53 AM2 AM2 C . G 3 HOH 1 201 3 HOH HOH B . G 3 HOH 2 202 6 HOH HOH B . G 3 HOH 3 203 8 HOH HOH B . G 3 HOH 4 204 10 HOH HOH B . G 3 HOH 5 205 11 HOH HOH B . G 3 HOH 6 206 15 HOH HOH B . G 3 HOH 7 207 19 HOH HOH B . G 3 HOH 8 208 22 HOH HOH B . G 3 HOH 9 209 24 HOH HOH B . G 3 HOH 10 210 25 HOH HOH B . G 3 HOH 11 211 26 HOH HOH B . G 3 HOH 12 212 27 HOH HOH B . G 3 HOH 13 213 30 HOH HOH B . G 3 HOH 14 214 32 HOH HOH B . G 3 HOH 15 215 34 HOH HOH B . G 3 HOH 16 216 35 HOH HOH B . G 3 HOH 17 217 37 HOH HOH B . G 3 HOH 18 218 38 HOH HOH B . G 3 HOH 19 219 40 HOH HOH B . G 3 HOH 20 220 41 HOH HOH B . G 3 HOH 21 221 44 HOH HOH B . G 3 HOH 22 222 46 HOH HOH B . G 3 HOH 23 223 48 HOH HOH B . G 3 HOH 24 224 49 HOH HOH B . G 3 HOH 25 225 52 HOH HOH B . G 3 HOH 26 226 56 HOH HOH B . G 3 HOH 27 227 57 HOH HOH B . G 3 HOH 28 228 59 HOH HOH B . G 3 HOH 29 229 61 HOH HOH B . G 3 HOH 30 230 62 HOH HOH B . G 3 HOH 31 231 67 HOH HOH B . G 3 HOH 32 232 68 HOH HOH B . G 3 HOH 33 233 69 HOH HOH B . G 3 HOH 34 234 71 HOH HOH B . G 3 HOH 35 235 75 HOH HOH B . G 3 HOH 36 236 77 HOH HOH B . G 3 HOH 37 237 78 HOH HOH B . G 3 HOH 38 238 79 HOH HOH B . G 3 HOH 39 239 80 HOH HOH B . G 3 HOH 40 240 81 HOH HOH B . G 3 HOH 41 241 83 HOH HOH B . G 3 HOH 42 242 87 HOH HOH B . G 3 HOH 43 243 90 HOH HOH B . G 3 HOH 44 244 93 HOH HOH B . G 3 HOH 45 245 97 HOH HOH B . G 3 HOH 46 246 98 HOH HOH B . G 3 HOH 47 247 99 HOH HOH B . G 3 HOH 48 248 101 HOH HOH B . G 3 HOH 49 249 102 HOH HOH B . G 3 HOH 50 250 104 HOH HOH B . G 3 HOH 51 251 105 HOH HOH B . G 3 HOH 52 252 107 HOH HOH B . G 3 HOH 53 253 108 HOH HOH B . G 3 HOH 54 254 109 HOH HOH B . G 3 HOH 55 255 110 HOH HOH B . G 3 HOH 56 256 115 HOH HOH B . G 3 HOH 57 257 117 HOH HOH B . G 3 HOH 58 258 119 HOH HOH B . G 3 HOH 59 259 120 HOH HOH B . G 3 HOH 60 260 121 HOH HOH B . G 3 HOH 61 261 123 HOH HOH B . G 3 HOH 62 262 125 HOH HOH B . G 3 HOH 63 263 128 HOH HOH B . G 3 HOH 64 264 129 HOH HOH B . G 3 HOH 65 265 130 HOH HOH B . G 3 HOH 66 266 131 HOH HOH B . G 3 HOH 67 267 133 HOH HOH B . G 3 HOH 68 268 134 HOH HOH B . G 3 HOH 69 269 136 HOH HOH B . G 3 HOH 70 270 139 HOH HOH B . G 3 HOH 71 271 141 HOH HOH B . G 3 HOH 72 272 145 HOH HOH B . G 3 HOH 73 273 146 HOH HOH B . G 3 HOH 74 274 149 HOH HOH B . G 3 HOH 75 275 151 HOH HOH B . G 3 HOH 76 276 152 HOH HOH B . G 3 HOH 77 277 155 HOH HOH B . G 3 HOH 78 278 158 HOH HOH B . G 3 HOH 79 279 160 HOH HOH B . G 3 HOH 80 280 161 HOH HOH B . G 3 HOH 81 281 162 HOH HOH B . G 3 HOH 82 282 165 HOH HOH B . G 3 HOH 83 283 166 HOH HOH B . G 3 HOH 84 284 167 HOH HOH B . G 3 HOH 85 285 168 HOH HOH B . G 3 HOH 86 286 170 HOH HOH B . G 3 HOH 87 287 171 HOH HOH B . G 3 HOH 88 288 172 HOH HOH B . G 3 HOH 89 289 173 HOH HOH B . G 3 HOH 90 290 174 HOH HOH B . G 3 HOH 91 291 177 HOH HOH B . G 3 HOH 92 292 178 HOH HOH B . G 3 HOH 93 293 183 HOH HOH B . G 3 HOH 94 294 185 HOH HOH B . G 3 HOH 95 295 186 HOH HOH B . G 3 HOH 96 296 189 HOH HOH B . G 3 HOH 97 297 190 HOH HOH B . G 3 HOH 98 298 192 HOH HOH B . G 3 HOH 99 299 194 HOH HOH B . G 3 HOH 100 300 195 HOH HOH B . G 3 HOH 101 301 197 HOH HOH B . G 3 HOH 102 302 199 HOH HOH B . G 3 HOH 103 303 201 HOH HOH B . G 3 HOH 104 304 202 HOH HOH B . G 3 HOH 105 305 204 HOH HOH B . G 3 HOH 106 306 208 HOH HOH B . G 3 HOH 107 307 209 HOH HOH B . G 3 HOH 108 308 1 HOH HOH B . H 3 HOH 1 201 2 HOH HOH C . H 3 HOH 2 202 12 HOH HOH C . H 3 HOH 3 203 4 HOH HOH C . H 3 HOH 4 204 5 HOH HOH C . H 3 HOH 5 205 7 HOH HOH C . H 3 HOH 6 206 9 HOH HOH C . H 3 HOH 7 207 13 HOH HOH C . H 3 HOH 8 208 14 HOH HOH C . H 3 HOH 9 209 16 HOH HOH C . H 3 HOH 10 210 17 HOH HOH C . H 3 HOH 11 211 18 HOH HOH C . H 3 HOH 12 212 20 HOH HOH C . H 3 HOH 13 213 21 HOH HOH C . H 3 HOH 14 214 23 HOH HOH C . H 3 HOH 15 215 28 HOH HOH C . H 3 HOH 16 216 29 HOH HOH C . H 3 HOH 17 217 31 HOH HOH C . H 3 HOH 18 218 33 HOH HOH C . H 3 HOH 19 219 36 HOH HOH C . H 3 HOH 20 220 39 HOH HOH C . H 3 HOH 21 221 42 HOH HOH C . H 3 HOH 22 222 43 HOH HOH C . H 3 HOH 23 223 45 HOH HOH C . H 3 HOH 24 224 47 HOH HOH C . H 3 HOH 25 225 50 HOH HOH C . H 3 HOH 26 226 51 HOH HOH C . H 3 HOH 27 227 53 HOH HOH C . H 3 HOH 28 228 54 HOH HOH C . H 3 HOH 29 229 55 HOH HOH C . H 3 HOH 30 230 58 HOH HOH C . H 3 HOH 31 231 60 HOH HOH C . H 3 HOH 32 232 63 HOH HOH C . H 3 HOH 33 233 64 HOH HOH C . H 3 HOH 34 234 65 HOH HOH C . H 3 HOH 35 235 66 HOH HOH C . H 3 HOH 36 236 70 HOH HOH C . H 3 HOH 37 237 72 HOH HOH C . H 3 HOH 38 238 73 HOH HOH C . H 3 HOH 39 239 74 HOH HOH C . H 3 HOH 40 240 76 HOH HOH C . H 3 HOH 41 241 82 HOH HOH C . H 3 HOH 42 242 84 HOH HOH C . H 3 HOH 43 243 85 HOH HOH C . H 3 HOH 44 244 86 HOH HOH C . H 3 HOH 45 245 88 HOH HOH C . H 3 HOH 46 246 89 HOH HOH C . H 3 HOH 47 247 91 HOH HOH C . H 3 HOH 48 248 92 HOH HOH C . H 3 HOH 49 249 94 HOH HOH C . H 3 HOH 50 250 95 HOH HOH C . H 3 HOH 51 251 96 HOH HOH C . H 3 HOH 52 252 100 HOH HOH C . H 3 HOH 53 253 103 HOH HOH C . H 3 HOH 54 254 106 HOH HOH C . H 3 HOH 55 255 111 HOH HOH C . H 3 HOH 56 256 112 HOH HOH C . H 3 HOH 57 257 113 HOH HOH C . H 3 HOH 58 258 114 HOH HOH C . H 3 HOH 59 259 116 HOH HOH C . H 3 HOH 60 260 118 HOH HOH C . H 3 HOH 61 261 122 HOH HOH C . H 3 HOH 62 262 124 HOH HOH C . H 3 HOH 63 263 126 HOH HOH C . H 3 HOH 64 264 127 HOH HOH C . H 3 HOH 65 265 132 HOH HOH C . H 3 HOH 66 266 135 HOH HOH C . H 3 HOH 67 267 137 HOH HOH C . H 3 HOH 68 268 138 HOH HOH C . H 3 HOH 69 269 140 HOH HOH C . H 3 HOH 70 270 142 HOH HOH C . H 3 HOH 71 271 143 HOH HOH C . H 3 HOH 72 272 144 HOH HOH C . H 3 HOH 73 273 147 HOH HOH C . H 3 HOH 74 274 148 HOH HOH C . H 3 HOH 75 275 150 HOH HOH C . H 3 HOH 76 276 153 HOH HOH C . H 3 HOH 77 277 154 HOH HOH C . H 3 HOH 78 278 156 HOH HOH C . H 3 HOH 79 279 157 HOH HOH C . H 3 HOH 80 280 159 HOH HOH C . H 3 HOH 81 281 163 HOH HOH C . H 3 HOH 82 282 164 HOH HOH C . H 3 HOH 83 283 169 HOH HOH C . H 3 HOH 84 284 175 HOH HOH C . H 3 HOH 85 285 176 HOH HOH C . H 3 HOH 86 286 179 HOH HOH C . H 3 HOH 87 287 180 HOH HOH C . H 3 HOH 88 288 181 HOH HOH C . H 3 HOH 89 289 182 HOH HOH C . H 3 HOH 90 290 184 HOH HOH C . H 3 HOH 91 291 187 HOH HOH C . H 3 HOH 92 292 188 HOH HOH C . H 3 HOH 93 293 191 HOH HOH C . H 3 HOH 94 294 193 HOH HOH C . H 3 HOH 95 295 196 HOH HOH C . H 3 HOH 96 296 198 HOH HOH C . H 3 HOH 97 297 200 HOH HOH C . H 3 HOH 98 298 203 HOH HOH C . H 3 HOH 99 299 205 HOH HOH C . H 3 HOH 100 300 206 HOH HOH C . H 3 HOH 101 301 207 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5040 ? 1 MORE -63 ? 1 'SSA (A^2)' 8260 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2013-09-04 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _software.name PHENIX _software.classification refinement _software.version '(phenix.refine: 1.6.1_357)' _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 1 ? A U 1 2 1 Y 1 C U 1 ? B U 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AM2 CA1 C N S 38 AM2 CA2 C N R 39 AM2 CA3 C N N 40 AM2 CA4 C N S 41 AM2 CA5 C N R 42 AM2 CA6 C N R 43 AM2 CA7 C N S 44 AM2 CA8 C N R 45 AM2 CA9 C N N 46 AM2 OA4 O N N 47 AM2 OA5 O N N 48 AM2 NA2 N N N 49 AM2 NA7 N N N 50 AM2 OA6 O N N 51 AM2 OA8 O N N 52 AM2 OA1 O N N 53 AM2 CB1 C N R 54 AM2 CB2 C N R 55 AM2 CB3 C N S 56 AM2 CB4 C N S 57 AM2 CB5 C N S 58 AM2 CB6 C N N 59 AM2 OB1 O N N 60 AM2 NB4 N N N 61 AM2 OB2 O N N 62 AM2 OB3 O N N 63 AM2 OB6 O N N 64 AM2 CC1 C N R 65 AM2 CC2 C N R 66 AM2 CC3 C N S 67 AM2 CC4 C N R 68 AM2 CC5 C N N 69 AM2 CC6 C N S 70 AM2 NC4 N N N 71 AM2 NC6 N N N 72 AM2 OC2 O N N 73 AM2 OC3 O N N 74 AM2 HA1 H N N 75 AM2 HA2 H N N 76 AM2 HA31 H N N 77 AM2 HA32 H N N 78 AM2 HA4 H N N 79 AM2 HA5 H N N 80 AM2 HA6 H N N 81 AM2 HA7 H N N 82 AM2 HA8 H N N 83 AM2 HA91 H N N 84 AM2 HA92 H N N 85 AM2 HA93 H N N 86 AM2 HA21 H N N 87 AM2 HA22 H N N 88 AM2 H2 H N N 89 AM2 H1 H N N 90 AM2 HB1 H N N 91 AM2 HB2 H N N 92 AM2 HB3 H N N 93 AM2 HB4 H N N 94 AM2 HB5 H N N 95 AM2 HB61 H N N 96 AM2 HB62 H N N 97 AM2 HB41 H N N 98 AM2 HB42 H N N 99 AM2 H5 H N N 100 AM2 H6 H N N 101 AM2 HB6 H N N 102 AM2 HC1 H N N 103 AM2 HC2 H N N 104 AM2 HC3 H N N 105 AM2 HC4 H N N 106 AM2 HC51 H N N 107 AM2 HC52 H N N 108 AM2 HC6 H N N 109 AM2 HC41 H N N 110 AM2 HC42 H N N 111 AM2 HC61 H N N 112 AM2 HC62 H N N 113 AM2 H3 H N N 114 AM2 H4 H N N 115 C OP3 O N N 116 C P P N N 117 C OP1 O N N 118 C OP2 O N N 119 C "O5'" O N N 120 C "C5'" C N N 121 C "C4'" C N R 122 C "O4'" O N N 123 C "C3'" C N S 124 C "O3'" O N N 125 C "C2'" C N R 126 C "O2'" O N N 127 C "C1'" C N R 128 C N1 N N N 129 C C2 C N N 130 C O2 O N N 131 C N3 N N N 132 C C4 C N N 133 C N4 N N N 134 C C5 C N N 135 C C6 C N N 136 C HOP3 H N N 137 C HOP2 H N N 138 C "H5'" H N N 139 C "H5''" H N N 140 C "H4'" H N N 141 C "H3'" H N N 142 C "HO3'" H N N 143 C "H2'" H N N 144 C "HO2'" H N N 145 C "H1'" H N N 146 C H41 H N N 147 C H42 H N N 148 C H5 H N N 149 C H6 H N N 150 G OP3 O N N 151 G P P N N 152 G OP1 O N N 153 G OP2 O N N 154 G "O5'" O N N 155 G "C5'" C N N 156 G "C4'" C N R 157 G "O4'" O N N 158 G "C3'" C N S 159 G "O3'" O N N 160 G "C2'" C N R 161 G "O2'" O N N 162 G "C1'" C N R 163 G N9 N Y N 164 G C8 C Y N 165 G N7 N Y N 166 G C5 C Y N 167 G C6 C N N 168 G O6 O N N 169 G N1 N N N 170 G C2 C N N 171 G N2 N N N 172 G N3 N N N 173 G C4 C Y N 174 G HOP3 H N N 175 G HOP2 H N N 176 G "H5'" H N N 177 G "H5''" H N N 178 G "H4'" H N N 179 G "H3'" H N N 180 G "HO3'" H N N 181 G "H2'" H N N 182 G "HO2'" H N N 183 G "H1'" H N N 184 G H8 H N N 185 G H1 H N N 186 G H21 H N N 187 G H22 H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 U OP3 O N N 192 U P P N N 193 U OP1 O N N 194 U OP2 O N N 195 U "O5'" O N N 196 U "C5'" C N N 197 U "C4'" C N R 198 U "O4'" O N N 199 U "C3'" C N S 200 U "O3'" O N N 201 U "C2'" C N R 202 U "O2'" O N N 203 U "C1'" C N R 204 U N1 N N N 205 U C2 C N N 206 U O2 O N N 207 U N3 N N N 208 U C4 C N N 209 U O4 O N N 210 U C5 C N N 211 U C6 C N N 212 U HOP3 H N N 213 U HOP2 H N N 214 U "H5'" H N N 215 U "H5''" H N N 216 U "H4'" H N N 217 U "H3'" H N N 218 U "HO3'" H N N 219 U "H2'" H N N 220 U "HO2'" H N N 221 U "H1'" H N N 222 U H3 H N N 223 U H5 H N N 224 U H6 H N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AM2 CA1 CA2 sing N N 40 AM2 CA1 OA4 sing N N 41 AM2 CA1 OA1 sing N N 42 AM2 CA1 HA1 sing N N 43 AM2 CA2 CA3 sing N N 44 AM2 CA2 NA2 sing N N 45 AM2 CA2 HA2 sing N N 46 AM2 CA3 CA4 sing N N 47 AM2 CA3 HA31 sing N N 48 AM2 CA3 HA32 sing N N 49 AM2 CA4 CA5 sing N N 50 AM2 CA4 OA5 sing N N 51 AM2 CA4 HA4 sing N N 52 AM2 CA5 CA6 sing N N 53 AM2 CA5 OA4 sing N N 54 AM2 CA5 HA5 sing N N 55 AM2 CA6 CA7 sing N N 56 AM2 CA6 OA6 sing N N 57 AM2 CA6 HA6 sing N N 58 AM2 CA7 CA8 sing N N 59 AM2 CA7 NA7 sing N N 60 AM2 CA7 HA7 sing N N 61 AM2 CA8 OA5 sing N N 62 AM2 CA8 OA8 sing N N 63 AM2 CA8 HA8 sing N N 64 AM2 CA9 NA7 sing N N 65 AM2 CA9 HA91 sing N N 66 AM2 CA9 HA92 sing N N 67 AM2 CA9 HA93 sing N N 68 AM2 NA2 HA21 sing N N 69 AM2 NA2 HA22 sing N N 70 AM2 NA7 H2 sing N N 71 AM2 OA6 H1 sing N N 72 AM2 OA8 CB1 sing N N 73 AM2 OA1 CC1 sing N N 74 AM2 CB1 CB2 sing N N 75 AM2 CB1 OB1 sing N N 76 AM2 CB1 HB1 sing N N 77 AM2 CB2 CB3 sing N N 78 AM2 CB2 OB2 sing N N 79 AM2 CB2 HB2 sing N N 80 AM2 CB3 CB4 sing N N 81 AM2 CB3 OB3 sing N N 82 AM2 CB3 HB3 sing N N 83 AM2 CB4 CB5 sing N N 84 AM2 CB4 NB4 sing N N 85 AM2 CB4 HB4 sing N N 86 AM2 CB5 CB6 sing N N 87 AM2 CB5 OB1 sing N N 88 AM2 CB5 HB5 sing N N 89 AM2 CB6 OB6 sing N N 90 AM2 CB6 HB61 sing N N 91 AM2 CB6 HB62 sing N N 92 AM2 NB4 HB41 sing N N 93 AM2 NB4 HB42 sing N N 94 AM2 OB2 H5 sing N N 95 AM2 OB3 H6 sing N N 96 AM2 OB6 HB6 sing N N 97 AM2 CC1 CC2 sing N N 98 AM2 CC1 CC6 sing N N 99 AM2 CC1 HC1 sing N N 100 AM2 CC2 CC3 sing N N 101 AM2 CC2 OC2 sing N N 102 AM2 CC2 HC2 sing N N 103 AM2 CC3 CC4 sing N N 104 AM2 CC3 OC3 sing N N 105 AM2 CC3 HC3 sing N N 106 AM2 CC4 CC5 sing N N 107 AM2 CC4 NC4 sing N N 108 AM2 CC4 HC4 sing N N 109 AM2 CC5 CC6 sing N N 110 AM2 CC5 HC51 sing N N 111 AM2 CC5 HC52 sing N N 112 AM2 CC6 NC6 sing N N 113 AM2 CC6 HC6 sing N N 114 AM2 NC4 HC41 sing N N 115 AM2 NC4 HC42 sing N N 116 AM2 NC6 HC61 sing N N 117 AM2 NC6 HC62 sing N N 118 AM2 OC2 H3 sing N N 119 AM2 OC3 H4 sing N N 120 C OP3 P sing N N 121 C OP3 HOP3 sing N N 122 C P OP1 doub N N 123 C P OP2 sing N N 124 C P "O5'" sing N N 125 C OP2 HOP2 sing N N 126 C "O5'" "C5'" sing N N 127 C "C5'" "C4'" sing N N 128 C "C5'" "H5'" sing N N 129 C "C5'" "H5''" sing N N 130 C "C4'" "O4'" sing N N 131 C "C4'" "C3'" sing N N 132 C "C4'" "H4'" sing N N 133 C "O4'" "C1'" sing N N 134 C "C3'" "O3'" sing N N 135 C "C3'" "C2'" sing N N 136 C "C3'" "H3'" sing N N 137 C "O3'" "HO3'" sing N N 138 C "C2'" "O2'" sing N N 139 C "C2'" "C1'" sing N N 140 C "C2'" "H2'" sing N N 141 C "O2'" "HO2'" sing N N 142 C "C1'" N1 sing N N 143 C "C1'" "H1'" sing N N 144 C N1 C2 sing N N 145 C N1 C6 sing N N 146 C C2 O2 doub N N 147 C C2 N3 sing N N 148 C N3 C4 doub N N 149 C C4 N4 sing N N 150 C C4 C5 sing N N 151 C N4 H41 sing N N 152 C N4 H42 sing N N 153 C C5 C6 doub N N 154 C C5 H5 sing N N 155 C C6 H6 sing N N 156 G OP3 P sing N N 157 G OP3 HOP3 sing N N 158 G P OP1 doub N N 159 G P OP2 sing N N 160 G P "O5'" sing N N 161 G OP2 HOP2 sing N N 162 G "O5'" "C5'" sing N N 163 G "C5'" "C4'" sing N N 164 G "C5'" "H5'" sing N N 165 G "C5'" "H5''" sing N N 166 G "C4'" "O4'" sing N N 167 G "C4'" "C3'" sing N N 168 G "C4'" "H4'" sing N N 169 G "O4'" "C1'" sing N N 170 G "C3'" "O3'" sing N N 171 G "C3'" "C2'" sing N N 172 G "C3'" "H3'" sing N N 173 G "O3'" "HO3'" sing N N 174 G "C2'" "O2'" sing N N 175 G "C2'" "C1'" sing N N 176 G "C2'" "H2'" sing N N 177 G "O2'" "HO2'" sing N N 178 G "C1'" N9 sing N N 179 G "C1'" "H1'" sing N N 180 G N9 C8 sing Y N 181 G N9 C4 sing Y N 182 G C8 N7 doub Y N 183 G C8 H8 sing N N 184 G N7 C5 sing Y N 185 G C5 C6 sing N N 186 G C5 C4 doub Y N 187 G C6 O6 doub N N 188 G C6 N1 sing N N 189 G N1 C2 sing N N 190 G N1 H1 sing N N 191 G C2 N2 sing N N 192 G C2 N3 doub N N 193 G N2 H21 sing N N 194 G N2 H22 sing N N 195 G N3 C4 sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 U OP3 P sing N N 199 U OP3 HOP3 sing N N 200 U P OP1 doub N N 201 U P OP2 sing N N 202 U P "O5'" sing N N 203 U OP2 HOP2 sing N N 204 U "O5'" "C5'" sing N N 205 U "C5'" "C4'" sing N N 206 U "C5'" "H5'" sing N N 207 U "C5'" "H5''" sing N N 208 U "C4'" "O4'" sing N N 209 U "C4'" "C3'" sing N N 210 U "C4'" "H4'" sing N N 211 U "O4'" "C1'" sing N N 212 U "C3'" "O3'" sing N N 213 U "C3'" "C2'" sing N N 214 U "C3'" "H3'" sing N N 215 U "O3'" "HO3'" sing N N 216 U "C2'" "O2'" sing N N 217 U "C2'" "C1'" sing N N 218 U "C2'" "H2'" sing N N 219 U "O2'" "HO2'" sing N N 220 U "C1'" N1 sing N N 221 U "C1'" "H1'" sing N N 222 U N1 C2 sing N N 223 U N1 C6 sing N N 224 U C2 O2 doub N N 225 U C2 N3 sing N N 226 U N3 C4 sing N N 227 U N3 H3 sing N N 228 U C4 O4 doub N N 229 U C4 C5 sing N N 230 U C5 C6 doub N N 231 U C5 H5 sing N N 232 U C6 H6 sing N N 233 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4K31 'double helix' 4K31 'a-form double helix' 4K31 'bulge loop' 4K31 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.174 -0.157 0.082 -2.870 3.569 -0.905 1 B_G3:C23_C B 3 ? C 23 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.123 -0.113 -0.014 4.920 -5.312 -0.303 2 B_C4:G22_C B 4 ? C 22 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.135 -0.130 -0.118 -5.027 -18.351 2.575 3 B_G5:C21_C B 5 ? C 21 ? 19 1 1 A U 6 1_555 B U 20 1_555 2.477 -1.699 0.219 -1.625 -14.583 6.521 4 B_U6:U20_C B 6 ? C 20 ? 16 1 1 A C 7 1_555 B G 19 1_555 0.240 -0.178 -0.112 6.215 -11.712 -1.032 5 B_C7:G19_C B 7 ? C 19 ? 19 1 1 A G 8 1_555 B A 17 1_555 0.250 1.629 -0.140 9.899 -5.092 -17.870 6 B_G8:A17_C B 8 ? C 17 ? 8 1 1 A U 9 1_555 B A 16 1_555 0.055 0.006 0.086 17.014 -17.682 -4.935 7 B_U9:A16_C B 9 ? C 16 ? 20 1 1 A U 10 1_555 B A 15 1_555 -0.140 0.054 -0.019 15.313 -16.466 -0.609 8 B_U10:A15_C B 10 ? C 15 ? 20 1 1 A C 11 1_555 B G 14 1_555 0.249 -0.149 0.183 2.686 -10.951 1.365 9 B_C11:G14_C B 11 ? C 14 ? 19 1 1 A C 12 1_555 B G 13 1_555 -0.006 -0.170 0.266 -4.606 -6.268 0.675 10 B_C12:G13_C B 12 ? C 13 ? 19 1 1 A G 13 1_555 B C 12 1_555 0.044 -0.179 0.410 1.366 -9.164 1.392 11 B_G13:C12_C B 13 ? C 12 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.130 -0.053 -0.405 -8.965 -14.344 2.187 12 B_G14:C11_C B 14 ? C 11 ? 19 1 1 A A 15 1_555 B U 10 1_555 0.184 -0.021 -0.126 -12.583 -13.128 0.729 13 B_A15:U10_C B 15 ? C 10 ? 20 1 1 A A 16 1_555 B U 9 1_555 0.041 -0.069 0.246 -20.769 -16.228 -2.822 14 B_A16:U9_C B 16 ? C 9 ? 20 1 1 A A 17 1_555 B G 8 1_555 -0.263 1.612 -0.201 -6.822 -8.910 -10.736 15 B_A17:G8_C B 17 ? C 8 ? 8 1 1 A G 19 1_555 B C 7 1_555 -0.206 -0.145 -0.059 -5.572 -11.891 0.042 16 B_G19:C7_C B 19 ? C 7 ? 19 1 1 A U 20 1_555 B U 6 1_555 -2.439 -1.677 0.242 2.180 -14.955 6.054 17 B_U20:U6_C B 20 ? C 6 ? 16 1 1 A C 21 1_555 B G 5 1_555 0.151 -0.152 -0.136 5.113 -18.185 2.296 18 B_C21:G5_C B 21 ? C 5 ? 19 1 1 A G 22 1_555 B C 4 1_555 -0.128 -0.111 -0.029 -5.063 -5.630 -0.338 19 B_G22:C4_C B 22 ? C 4 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.207 -0.160 0.104 2.922 3.169 -0.953 20 B_C23:G3_C B 23 ? C 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.281 -1.829 3.205 0.576 -1.004 32.788 -3.068 0.595 3.253 -1.778 -1.020 32.808 1 BB_G3C4:G22C23_CC B 3 ? C 23 ? B 4 ? C 22 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 -0.186 -1.849 3.407 -0.622 11.070 27.554 -5.799 0.241 2.497 22.138 1.244 29.661 2 BB_C4G5:C21G22_CC B 4 ? C 22 ? B 5 ? C 21 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 0.515 -0.931 3.176 -0.660 4.929 45.960 -1.587 -0.710 3.059 6.291 0.842 46.214 3 BB_G5U6:U20C21_CC B 5 ? C 21 ? B 6 ? C 20 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 -0.218 -1.725 2.895 7.877 3.969 25.601 -4.532 2.140 2.431 8.636 -17.140 27.054 4 BB_U6C7:G19U20_CC B 6 ? C 20 ? B 7 ? C 19 ? 1 A C 7 1_555 B G 19 1_555 A G 8 1_555 B A 17 1_555 0.776 -3.573 3.395 -5.042 5.667 32.253 -7.158 -2.151 2.599 10.028 8.923 33.110 5 BB_C7G8:A17G19_CC B 7 ? C 19 ? B 8 ? C 17 ? 1 A G 8 1_555 B A 17 1_555 A U 9 1_555 B A 16 1_555 -0.381 -1.884 2.867 -7.006 7.533 27.020 -5.145 -0.508 2.294 15.432 14.351 28.878 6 BB_G8U9:A16A17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 A U 9 1_555 B A 16 1_555 A U 10 1_555 B A 15 1_555 0.296 -1.603 3.259 -4.098 6.183 36.029 -3.345 -1.001 2.904 9.868 6.541 36.760 7 BB_U9U10:A15A16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 A U 10 1_555 B A 15 1_555 A C 11 1_555 B G 14 1_555 -0.239 -1.652 3.345 -0.072 7.231 34.063 -3.834 0.389 2.943 12.174 0.121 34.800 8 BB_U10C11:G14A15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 -0.041 -1.835 3.264 2.504 6.704 31.524 -4.416 0.491 2.813 12.144 -4.535 32.306 9 BB_C11C12:G13G14_CC B 11 ? C 14 ? B 12 ? C 13 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 0.017 -2.152 3.249 -0.095 10.260 22.619 -7.658 -0.064 2.087 24.596 0.227 24.810 10 BB_C12G13:C12G13_CC B 12 ? C 13 ? B 13 ? C 12 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 -0.033 -1.740 3.505 1.537 11.429 32.181 -4.748 0.296 2.741 19.839 -2.668 34.133 11 BB_G13G14:C11C12_CC B 13 ? C 12 ? B 14 ? C 11 ? 1 A G 14 1_555 B C 11 1_555 A A 15 1_555 B U 10 1_555 0.125 -1.474 3.171 -3.300 8.900 32.958 -3.778 -0.685 2.670 15.296 5.673 34.261 12 BB_G14A15:U10C11_CC B 14 ? C 11 ? B 15 ? C 10 ? 1 A A 15 1_555 B U 10 1_555 A A 16 1_555 B U 9 1_555 -0.317 -1.490 3.320 -0.991 3.332 36.757 -2.801 0.368 3.185 5.270 1.568 36.916 13 BB_A15A16:U9U10_CC B 15 ? C 10 ? B 16 ? C 9 ? 1 A A 16 1_555 B U 9 1_555 A A 17 1_555 B G 8 1_555 0.307 -1.905 2.772 11.473 5.156 28.504 -4.361 1.224 2.347 9.886 -21.997 31.103 14 BB_A16A17:G8U9_CC B 16 ? C 9 ? B 17 ? C 8 ? 1 A A 17 1_555 B G 8 1_555 A G 19 1_555 B C 7 1_555 -0.760 -3.513 3.427 4.182 8.195 29.552 -8.004 2.148 2.268 15.597 -7.960 30.920 15 BB_A17G19:C7G8_CC B 17 ? C 8 ? B 19 ? C 7 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 0.173 -1.729 2.900 -7.788 3.808 25.492 -4.539 -2.055 2.461 8.328 17.032 26.903 16 BB_G19U20:U6C7_CC B 19 ? C 7 ? B 20 ? C 6 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 -0.516 -0.952 3.199 1.125 4.818 45.387 -1.632 0.759 3.075 6.223 -1.453 45.641 17 BB_U20C21:G5U6_CC B 20 ? C 6 ? B 21 ? C 5 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 0.211 -1.855 3.408 0.882 11.118 27.521 -5.822 -0.239 2.492 22.246 -1.765 29.655 18 BB_C21G22:C4G5_CC B 21 ? C 5 ? B 22 ? C 4 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.309 -1.819 3.210 -0.782 -0.911 32.996 -3.047 -0.675 3.250 -1.603 1.376 33.018 19 BB_G22C23:G3C4_CC B 22 ? C 4 ? B 23 ? C 3 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 APRAMYCIN AM2 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G5K _pdbx_initial_refinement_model.details 'pdb entry 2G5K' #