HEADER MEMBRANE PROTEIN 10-APR-13 4K3C TITLE THE CRYSTAL STRUCTURE OF BAMA FROM HAEMOPHILUS DUCREYI LACKING POTRA TITLE 2 DOMAINS 1-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI; SOURCE 3 ORGANISM_TAXID: 730; SOURCE 4 GENE: D15, BAMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL MEMBRANE PROTEIN, INSERTASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NOINAJ,P.LUKACIK,H.CHANG,N.EASLEY,S.K.BUCHANAN REVDAT 4 28-FEB-24 4K3C 1 REMARK REVDAT 3 02-OCT-13 4K3C 1 JRNL REVDAT 2 11-SEP-13 4K3C 1 JRNL REVDAT 1 04-SEP-13 4K3C 0 JRNL AUTH N.NOINAJ,A.J.KUSZAK,J.C.GUMBART,P.LUKACIK,H.CHANG, JRNL AUTH 2 N.C.EASLEY,T.LITHGOW,S.K.BUCHANAN JRNL TITL STRUCTURAL INSIGHT INTO THE BIOGENESIS OF BETA-BARREL JRNL TITL 2 MEMBRANE PROTEINS. JRNL REF NATURE V. 501 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23995689 JRNL DOI 10.1038/NATURE12521 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1042) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.570 REMARK 3 FREE R VALUE TEST SET COUNT : 3706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9474 - 8.4168 0.99 1510 138 0.2426 0.2550 REMARK 3 2 8.4168 - 6.7663 0.99 1499 137 0.2224 0.2307 REMARK 3 3 6.7663 - 5.9367 1.00 1515 149 0.2157 0.3007 REMARK 3 4 5.9367 - 5.4058 1.00 1537 137 0.2084 0.2601 REMARK 3 5 5.4058 - 5.0250 0.99 1532 147 0.2153 0.2584 REMARK 3 6 5.0250 - 4.7329 0.99 1510 144 0.1990 0.2411 REMARK 3 7 4.7329 - 4.4987 0.99 1531 142 0.1884 0.2385 REMARK 3 8 4.4987 - 4.3049 0.99 1488 143 0.2087 0.2633 REMARK 3 9 4.3049 - 4.1407 1.00 1549 148 0.2225 0.2613 REMARK 3 10 4.1407 - 3.9990 1.00 1484 137 0.2249 0.2804 REMARK 3 11 3.9990 - 3.8749 1.00 1577 143 0.2254 0.2364 REMARK 3 12 3.8749 - 3.7649 0.99 1534 142 0.1931 0.2616 REMARK 3 13 3.7649 - 3.6664 0.99 1420 135 0.2010 0.2611 REMARK 3 14 3.6664 - 3.5775 0.99 1566 152 0.1825 0.2338 REMARK 3 15 3.5775 - 3.4966 1.00 1528 144 0.1845 0.2357 REMARK 3 16 3.4966 - 3.4225 1.00 1494 144 0.2141 0.2946 REMARK 3 17 3.4225 - 3.3544 1.00 1553 149 0.2126 0.3206 REMARK 3 18 3.3544 - 3.2914 1.00 1551 147 0.2100 0.3307 REMARK 3 19 3.2914 - 3.2329 1.00 1491 133 0.2281 0.3148 REMARK 3 20 3.2329 - 3.1783 1.00 1511 141 0.2398 0.2607 REMARK 3 21 3.1783 - 3.1272 1.00 1559 147 0.2525 0.3312 REMARK 3 22 3.1272 - 3.0793 0.99 1554 141 0.2523 0.2656 REMARK 3 23 3.0793 - 3.0341 0.99 1459 135 0.2713 0.3459 REMARK 3 24 3.0341 - 2.9915 0.98 1505 140 0.2877 0.3666 REMARK 3 25 2.9915 - 2.9512 0.99 1490 141 0.3176 0.3488 REMARK 3 26 2.9512 - 2.9130 0.99 1591 150 0.3396 0.4498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4147 REMARK 3 ANGLE : 1.861 5619 REMARK 3 CHIRALITY : 0.130 596 REMARK 3 PLANARITY : 0.006 742 REMARK 3 DIHEDRAL : 17.609 1471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1952 8.8268-104.4904 REMARK 3 T TENSOR REMARK 3 T11: 1.7115 T22: 0.9624 REMARK 3 T33: 0.9228 T12: 0.0540 REMARK 3 T13: 0.0690 T23: -0.4084 REMARK 3 L TENSOR REMARK 3 L11: 0.1972 L22: 1.7005 REMARK 3 L33: 0.3190 L12: -0.4566 REMARK 3 L13: -0.1791 L23: 0.7408 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.8450 S13: -0.5408 REMARK 3 S21: -1.0816 S22: 0.1449 S23: 0.0266 REMARK 3 S31: 0.4525 S32: 0.0429 S33: -0.1628 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 793 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9475 12.9309 -55.9038 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.3602 REMARK 3 T33: 0.3212 T12: 0.0372 REMARK 3 T13: 0.0542 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.0307 L22: 2.3907 REMARK 3 L33: 0.2010 L12: 0.5858 REMARK 3 L13: -0.2286 L23: -0.6457 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: -0.0531 S13: -0.0282 REMARK 3 S21: -0.0047 S22: -0.1227 S23: 0.0446 REMARK 3 S31: -0.0150 S32: -0.0073 S33: 0.0452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.76000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX/AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CITRATE, 100 MM HEPES 7.5, REMARK 280 12% MPD, VAPOR DIFFUSION, HANGING DROP, BICELLES, TEMPERATURE REMARK 280 295K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.08100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.22700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.08100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.22700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 263 CG OD1 ND2 REMARK 470 ILE A 264 CG1 CG2 CD1 REMARK 470 SER A 265 OG REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 MET A 267 CG SD CE REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 269 CG1 CG2 CD1 REMARK 470 ILE A 270 CG1 CG2 CD1 REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 THR A 273 OG1 CG2 REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 GLN A 282 CG CD OE1 NE2 REMARK 470 LEU A 283 CG CD1 CD2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 THR A 285 OG1 CG2 REMARK 470 HIS A 286 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 287 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 GLN A 291 CG CD OE1 NE2 REMARK 470 LEU A 292 CG CD1 CD2 REMARK 470 PHE A 293 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 THR A 296 OG1 CG2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LEU A 298 CG CD1 CD2 REMARK 470 SER A 299 OG REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 ILE A 301 CG1 CG2 CD1 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLN A 307 CG CD OE1 NE2 REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 TYR A 314 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 322 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 323 CG CD REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 PHE A 325 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 326 CG OD1 ND2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 ASP A 329 CG OD1 OD2 REMARK 470 HIS A 330 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 331 OG1 CG2 REMARK 470 VAL A 332 CG1 CG2 REMARK 470 GLN A 333 CG CD OE1 NE2 REMARK 470 ILE A 334 CG1 CG2 CD1 REMARK 470 ASN A 335 CG OD1 ND2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 TRP A 373 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 373 CZ3 CH2 REMARK 470 ASN A 555 CG OD1 ND2 REMARK 470 GLN A 557 CG CD OE1 NE2 REMARK 470 ARG A 675 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 676 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 804 O HOH A 808 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 263 -160.93 74.22 REMARK 500 SER A 265 -81.05 -75.68 REMARK 500 ILE A 269 90.74 48.20 REMARK 500 GLN A 274 71.47 60.23 REMARK 500 LYS A 275 25.44 45.77 REMARK 500 ASN A 278 -79.24 -71.93 REMARK 500 ASN A 281 -70.34 -53.04 REMARK 500 HIS A 286 85.25 54.90 REMARK 500 PHE A 287 -84.22 -29.16 REMARK 500 LYS A 288 144.77 174.08 REMARK 500 ALA A 289 56.71 -163.90 REMARK 500 THR A 357 -101.97 -63.52 REMARK 500 ALA A 358 133.40 161.52 REMARK 500 ARG A 364 -31.40 -162.56 REMARK 500 SER A 377 -61.96 -165.41 REMARK 500 ARG A 388 -13.62 75.66 REMARK 500 VAL A 402 72.38 52.88 REMARK 500 THR A 405 -101.16 62.80 REMARK 500 ASP A 407 -5.97 75.14 REMARK 500 SER A 433 -38.39 96.92 REMARK 500 TYR A 474 -165.32 -101.71 REMARK 500 PHE A 475 -35.22 143.94 REMARK 500 ARG A 496 -120.97 -171.85 REMARK 500 LYS A 497 -38.80 170.20 REMARK 500 ALA A 498 32.79 -71.98 REMARK 500 SER A 499 -158.95 -68.52 REMARK 500 GLU A 519 -33.64 63.25 REMARK 500 ASN A 536 -118.53 68.00 REMARK 500 VAL A 537 91.94 59.14 REMARK 500 ARG A 539 91.26 69.01 REMARK 500 LYS A 551 48.28 39.67 REMARK 500 ILE A 554 -50.08 -128.34 REMARK 500 ASN A 555 92.13 42.26 REMARK 500 PRO A 556 -154.92 -53.72 REMARK 500 GLN A 557 6.23 -33.09 REMARK 500 HIS A 560 158.80 68.03 REMARK 500 ARG A 563 150.85 -40.12 REMARK 500 ASP A 568 60.59 112.64 REMARK 500 ASN A 579 -89.50 -96.23 REMARK 500 LEU A 580 100.93 52.41 REMARK 500 ASP A 604 -153.13 -80.80 REMARK 500 ASN A 605 -52.61 61.63 REMARK 500 LYS A 606 70.79 52.01 REMARK 500 HIS A 624 6.03 86.37 REMARK 500 SER A 658 -50.05 -130.11 REMARK 500 LEU A 659 85.12 -151.90 REMARK 500 GLU A 676 97.29 37.69 REMARK 500 PHE A 705 -38.03 66.24 REMARK 500 ILE A 706 -159.91 -69.97 REMARK 500 SER A 707 -179.81 81.55 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 497 ALA A 498 148.61 REMARK 500 SER A 499 ALA A 500 -136.35 REMARK 500 PRO A 556 GLN A 557 -55.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K3B RELATED DB: PDB DBREF 4K3C A 262 793 UNP Q93PM2 Q93PM2_HAEDC 262 793 SEQRES 1 A 532 TYR ASN ILE SER GLU MET ARG ILE ILE GLY ASP THR GLN SEQRES 2 A 532 LYS LEU ASP ASN GLU LEU ASN GLN LEU LEU THR HIS PHE SEQRES 3 A 532 LYS ALA GLY GLN LEU PHE ARG LYS THR GLU LEU SER ILE SEQRES 4 A 532 ILE GLU GLU GLN ILE LYS GLN ILE LEU GLY ASP ARG GLY SEQRES 5 A 532 TYR GLY SER ALA LYS VAL ASP LEU TYR PRO LYS PHE ASN SEQRES 6 A 532 GLU GLU ASP HIS THR VAL GLN ILE ASN PHE ILE VAL ASP SEQRES 7 A 532 ALA GLY ARG ARG ILE TYR VAL ARG LYS ILE ARG PHE GLU SEQRES 8 A 532 GLY ASN ASP VAL THR ALA ASP SER THR LEU ARG ARG GLU SEQRES 9 A 532 MET ARG GLN GLN GLU GLY ALA TRP LEU SER THR SER ALA SEQRES 10 A 532 VAL SER LEU ALA LYS SER ARG LEU GLU ARG THR GLY PHE SEQRES 11 A 532 TYR GLU THR VAL GLU MET SER MET PRO THR VAL LYS ASN SEQRES 12 A 532 THR ASP ASP GLN VAL ASP ILE ILE TYR LYS ILE LYS GLU SEQRES 13 A 532 ARG ASN THR GLY SER ILE ASN PHE GLY VAL GLY TYR GLY SEQRES 14 A 532 SER GLY SER GLY LEU SER TYR ASN ALA GLY ILE THR GLN SEQRES 15 A 532 ASP ASN PHE LEU GLY MET GLY SER SER LEU GLY LEU ASN SEQRES 16 A 532 GLY SER ARG ASN THR ASP SER THR ASN VAL ASN LEU SER SEQRES 17 A 532 TYR THR GLU PRO TYR PHE THR LYS ASP GLY VAL SER LEU SEQRES 18 A 532 GLY GLY ASN ILE PHE TYR GLU ASP TYR ASP ASN SER ALA SEQRES 19 A 532 ARG LYS ALA SER ALA ALA TYR LYS ARG LYS THR TYR GLY SEQRES 20 A 532 ALA SER GLY THR LEU GLY PHE PRO VAL ASP GLU ASN ASN SEQRES 21 A 532 SER TYR TYR LEU GLY LEU GLY TYR THR HIS ASP LYS LEU SEQRES 22 A 532 ARG ASN VAL GLU ARG GLU TYR THR ARG GLU LYS TYR VAL SEQRES 23 A 532 ASN SER MET LYS PHE PRO ILE ASN PRO GLN ASN SER HIS SEQRES 24 A 532 TYR ASP ARG ILE GLN SER ALA ASP PHE ASP LEU SER PHE SEQRES 25 A 532 GLY TRP ASN TYR ASN ASN LEU ASN ARG GLY TYR PHE PRO SEQRES 26 A 532 THR ALA GLY SER SER ALA ASN ILE SER GLY LYS LEU THR SEQRES 27 A 532 LEU PRO GLY SER ASP ASN LYS TYR TYR GLN VAL GLY THR SEQRES 28 A 532 ASN PHE SER GLY TYR ILE PRO LEU ASN SER GLU HIS LYS SEQRES 29 A 532 TRP VAL ILE ALA THR LYS GLY GLY LEU ALA TYR THR ASN SEQRES 30 A 532 SER PHE GLY GLY LYS GLU VAL PRO PHE TYR GLN LEU TYR SEQRES 31 A 532 SER ALA GLY GLY MET GLY SER LEU ARG GLY PHE ALA GLY SEQRES 32 A 532 GLY SER ILE GLY PRO LYS ALA ILE TYR TYR ARG GLU ASP SEQRES 33 A 532 GLY PHE LYS ALA PRO SER GLN ASP VAL ILE GLY GLY ASN SEQRES 34 A 532 ALA MET VAL ASN ALA SER LEU GLU LEU ILE ILE PRO ALA SEQRES 35 A 532 PRO PHE ILE SER ASP LYS TYR GLN HIS ASN VAL ARG THR SEQRES 36 A 532 SER VAL PHE VAL ASP ALA ALA THR VAL TRP ASN THR LYS SEQRES 37 A 532 TRP LYS GLN SER LYS ALA ASP TYR PRO ASN LEU PRO ASP SEQRES 38 A 532 PHE GLY ASP TYR LYS ARG VAL ARG ALA SER ALA GLY ILE SEQRES 39 A 532 ALA LEU GLN TRP GLN SER PRO ILE GLY PRO LEU SER PHE SEQRES 40 A 532 SER TYR ALA LYS PRO ILE LYS LYS TYR ALA GLY ASP GLU SEQRES 41 A 532 ILE GLU GLN PHE GLN PHE THR VAL GLY SER THR PHE FORMUL 2 HOH *12(H2 O) HELIX 1 1 LEU A 276 GLN A 282 1 7 HELIX 2 2 LEU A 298 ASP A 311 1 14 HELIX 3 3 ALA A 358 ARG A 363 1 6 HELIX 4 4 VAL A 379 GLU A 387 1 9 HELIX 5 5 GLU A 540 MET A 550 1 11 HELIX 6 6 PRO A 646 LEU A 650 5 5 HELIX 7 7 LYS A 729 LYS A 734 5 6 SHEET 1 A 2 LYS A 318 LEU A 321 0 SHEET 2 A 2 PHE A 336 ASP A 339 -1 O ASP A 339 N LYS A 318 SHEET 1 B 4 ALA A 372 TRP A 373 0 SHEET 2 B 4 TYR A 345 GLU A 352 -1 N VAL A 346 O ALA A 372 SHEET 3 B 4 GLN A 408 GLU A 417 1 O VAL A 409 N TYR A 345 SHEET 4 B 4 TYR A 392 MET A 397 -1 N GLU A 396 O LYS A 414 SHEET 1 C18 ILE A 564 SER A 566 0 SHEET 2 C18 ASN A 521 ARG A 535 -1 N LEU A 534 O ILE A 564 SHEET 3 C18 PHE A 569 ASN A 578 -1 O ASN A 576 N SER A 522 SHEET 4 C18 GLY A 589 THR A 599 -1 O LEU A 598 N LEU A 571 SHEET 5 C18 TYR A 607 PRO A 619 -1 O GLN A 609 N LYS A 597 SHEET 6 C18 VAL A 627 SER A 639 -1 O ILE A 628 N ILE A 618 SHEET 7 C18 ALA A 691 ILE A 701 -1 O GLU A 698 N ALA A 629 SHEET 8 C18 VAL A 714 TRP A 726 -1 O VAL A 718 N LEU A 699 SHEET 9 C18 ARG A 750 SER A 761 -1 O ARG A 750 N ALA A 723 SHEET 10 C18 GLY A 764 LYS A 775 -1 O PHE A 768 N LEU A 757 SHEET 11 C18 PHE A 785 THR A 792 -1 O THR A 788 N SER A 767 SHEET 12 C18 GLY A 421 GLY A 430 -1 N TYR A 429 O VAL A 789 SHEET 13 C18 GLY A 434 PHE A 446 -1 O SER A 436 N GLY A 428 SHEET 14 C18 SER A 451 ARG A 459 -1 O LEU A 455 N ILE A 441 SHEET 15 C18 SER A 463 PHE A 475 -1 O THR A 471 N SER A 452 SHEET 16 C18 SER A 481 ASP A 492 -1 O ILE A 486 N LEU A 468 SHEET 17 C18 LYS A 503 PHE A 515 -1 O THR A 506 N GLU A 489 SHEET 18 C18 ASN A 521 ARG A 535 -1 O HIS A 531 N TYR A 507 SHEET 1 D 2 GLY A 661 PHE A 662 0 SHEET 2 D 2 ILE A 782 GLU A 783 -1 O GLU A 783 N GLY A 661 SHEET 1 E 2 LYS A 670 TYR A 673 0 SHEET 2 E 2 ALA A 681 VAL A 686 -1 O SER A 683 N ALA A 671 CISPEP 1 ASP A 272 THR A 273 0 1.00 CISPEP 2 GLN A 282 LEU A 283 0 -3.35 CISPEP 3 LYS A 403 ASN A 404 0 3.62 CISPEP 4 THR A 405 ASP A 406 0 6.67 CISPEP 5 PHE A 446 LEU A 447 0 -13.96 CISPEP 6 ALA A 567 ASP A 568 0 -11.75 CISPEP 7 GLU A 676 ASP A 677 0 10.64 CISPEP 8 SER A 707 ASP A 708 0 -4.45 CRYST1 47.779 88.162 244.454 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004091 0.00000