HEADER TRANSFERASE/RNA 12-APR-13 4K4S TITLE POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R3_FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1749-2209; COMPND 5 SYNONYM: GENOME POLYPROTEIN; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*CP*GP*AP*AP* COMPND 12 A)-3'); COMPND 13 CHAIN: B, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: RNA (5'-R(*UP*GP*UP*UP*CP*GP*CP*GP*AP*GP*AP*GP*A)-3'); COMPND 17 CHAIN: C, G; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'); COMPND 21 CHAIN: D, H; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 4; SOURCE 12 SYNTHETIC: YES KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GONG,O.B.PEERSEN REVDAT 3 28-FEB-24 4K4S 1 REMARK SEQADV LINK REVDAT 2 03-JUL-13 4K4S 1 JRNL REVDAT 1 22-MAY-13 4K4S 0 JRNL AUTH P.GONG,M.G.KORTUS,J.C.NIX,R.E.DAVIS,O.B.PEERSEN JRNL TITL STRUCTURES OF COXSACKIEVIRUS, RHINOVIRUS, AND POLIOVIRUS JRNL TITL 2 POLYMERASE ELONGATION COMPLEXES SOLVED BY ENGINEERING RNA JRNL TITL 3 MEDIATED CRYSTAL CONTACTS. JRNL REF PLOS ONE V. 8 60272 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23667424 JRNL DOI 10.1371/JOURNAL.PONE.0060272 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 47337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9276 - 6.1639 0.96 2599 145 0.1892 0.2153 REMARK 3 2 6.1639 - 4.8953 0.97 2607 141 0.1699 0.1738 REMARK 3 3 4.8953 - 4.2773 0.96 2634 132 0.1488 0.1850 REMARK 3 4 4.2773 - 3.8866 0.98 2652 135 0.1513 0.2122 REMARK 3 5 3.8866 - 3.6082 0.98 2652 145 0.1691 0.2147 REMARK 3 6 3.6082 - 3.3956 0.99 2698 138 0.2060 0.2583 REMARK 3 7 3.3956 - 3.2256 0.98 2621 155 0.2179 0.2792 REMARK 3 8 3.2256 - 3.0853 0.99 2607 148 0.2312 0.3265 REMARK 3 9 3.0853 - 2.9666 0.98 2694 138 0.2431 0.3337 REMARK 3 10 2.9666 - 2.8642 0.98 2628 163 0.2616 0.2910 REMARK 3 11 2.8642 - 2.7747 0.98 2640 138 0.2632 0.3652 REMARK 3 12 2.7747 - 2.6954 0.98 2643 126 0.2551 0.3349 REMARK 3 13 2.6954 - 2.6244 0.98 2685 128 0.2707 0.3622 REMARK 3 14 2.6244 - 2.5604 0.98 2597 138 0.2623 0.3584 REMARK 3 15 2.5604 - 2.5022 0.98 2665 157 0.2969 0.3321 REMARK 3 16 2.5022 - 2.4490 0.97 2591 132 0.3216 0.3953 REMARK 3 17 2.4490 - 2.4000 0.98 2717 148 0.3236 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9203 REMARK 3 ANGLE : 1.129 12756 REMARK 3 CHIRALITY : 0.048 1443 REMARK 3 PLANARITY : 0.006 1371 REMARK 3 DIHEDRAL : 16.042 3618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.9.1L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 1.910 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.92 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, TEMPERATURE 289K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 A B 612 REMARK 465 G D 0 REMARK 465 A D 5 REMARK 465 U D 6 REMARK 465 G D 7 REMARK 465 A D 8 REMARK 465 SER E 463 REMARK 465 SER E 464 REMARK 465 SER E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 HIS E 469 REMARK 465 HIS E 470 REMARK 465 HIS E 471 REMARK 465 A F 590 REMARK 465 A F 591 REMARK 465 G F 592 REMARK 465 U F 593 REMARK 465 C F 594 REMARK 465 A F 612 REMARK 465 G H 0 REMARK 465 G H 4 REMARK 465 A H 5 REMARK 465 U H 6 REMARK 465 G H 7 REMARK 465 A H 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' G G 696 O HOH G 804 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O VAL A 12 OH TYR E 148 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -28.66 -29.19 REMARK 500 ILE A 130 -38.71 -130.95 REMARK 500 PHE A 258 42.49 -95.78 REMARK 500 LYS A 276 -99.44 48.26 REMARK 500 LYS A 359 16.34 58.06 REMARK 500 ASP A 406 108.04 -173.81 REMARK 500 SER E 9 -33.35 -27.40 REMARK 500 GLU E 11 -5.80 -59.63 REMARK 500 LEU E 110 150.04 -47.90 REMARK 500 ILE E 130 -39.70 -130.03 REMARK 500 PHE E 258 42.58 -95.26 REMARK 500 LYS E 276 -99.44 47.45 REMARK 500 LYS E 359 17.07 59.21 REMARK 500 ASP E 406 107.85 -172.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 272 NE2 REMARK 620 2 CYS A 281 SG 109.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 272 NE2 REMARK 620 2 CYS E 281 SG 108.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OL6 RELATED DB: PDB REMARK 900 RELATED ID: 1RA6 RELATED DB: PDB REMARK 900 RELATED ID: 4K4T RELATED DB: PDB REMARK 900 RELATED ID: 4K4U RELATED DB: PDB REMARK 900 RELATED ID: 4K4V RELATED DB: PDB REMARK 900 RELATED ID: 4K4W RELATED DB: PDB REMARK 900 RELATED ID: 4K4X RELATED DB: PDB REMARK 900 RELATED ID: 4K4Y RELATED DB: PDB REMARK 900 RELATED ID: 4K4Z RELATED DB: PDB REMARK 900 RELATED ID: 4K50 RELATED DB: PDB DBREF 4K4S A 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4S E 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4S B 590 612 PDB 4K4S 4K4S 590 612 DBREF 4K4S F 590 612 PDB 4K4S 4K4S 590 612 DBREF 4K4S C 689 701 PDB 4K4S 4K4S 689 701 DBREF 4K4S G 689 701 PDB 4K4S 4K4S 689 701 DBREF 4K4S D 0 8 PDB 4K4S 4K4S 0 8 DBREF 4K4S H 0 8 PDB 4K4S 4K4S 0 8 SEQADV 4K4S ASP A 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4S GLY A 462 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER A 463 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER A 464 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER A 465 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 466 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 467 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 468 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 469 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 470 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS A 471 UNP P03300 EXPRESSION TAG SEQADV 4K4S ASP E 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4S GLY E 462 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER E 463 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER E 464 UNP P03300 EXPRESSION TAG SEQADV 4K4S SER E 465 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 466 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 467 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 468 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 469 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 470 UNP P03300 EXPRESSION TAG SEQADV 4K4S HIS E 471 UNP P03300 EXPRESSION TAG SEQRES 1 A 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 471 PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 A 471 HIS HIS HIS SEQRES 1 B 23 A A G U C U C C A G G U C SEQRES 2 B 23 U C U C G C G A A A SEQRES 1 C 13 U G U U C G C G A G A G A SEQRES 1 D 9 G G G A G A U G A SEQRES 1 E 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 E 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 E 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 E 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 E 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 E 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 E 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 E 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 E 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 E 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 E 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 E 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 E 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 E 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 E 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 E 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 E 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 E 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 E 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 E 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 E 471 PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 E 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 E 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 E 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 E 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 E 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 E 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 E 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 E 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 E 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 E 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 E 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 E 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 E 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 E 471 HIS HIS HIS SEQRES 1 F 23 A A G U C U C C A G G U C SEQRES 2 F 23 U C U C G C G A A A SEQRES 1 G 13 U G U U C G C G A G A G A SEQRES 1 H 9 G G G A G A U G A HET ZN A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET ZN E 501 1 HET GOL E 502 6 HET GOL E 503 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 ZN 2(ZN 2+) FORMUL 10 GOL 5(C3 H8 O3) FORMUL 16 HOH *238(H2 O) HELIX 1 1 ASP A 53 SER A 60 1 8 HELIX 2 2 ASP A 71 SER A 87 1 17 HELIX 3 3 CYS A 96 GLY A 103 1 8 HELIX 4 4 PRO A 119 GLY A 124 5 6 HELIX 5 5 LYS A 126 ILE A 130 5 5 HELIX 6 6 THR A 138 GLY A 149 1 12 HELIX 7 7 LYS A 165 GLY A 171 1 7 HELIX 8 8 SER A 180 ASN A 201 1 22 HELIX 9 9 ASP A 213 TRP A 218 1 6 HELIX 10 10 LYS A 220 MET A 225 1 6 HELIX 11 11 GLY A 236 LEU A 241 1 6 HELIX 12 12 SER A 242 GLY A 257 1 16 HELIX 13 13 PHE A 258 ARG A 261 5 4 HELIX 14 14 VAL A 262 ASN A 269 1 8 HELIX 15 15 GLY A 292 TYR A 313 1 22 HELIX 16 16 ASP A 317 LEU A 321 5 5 HELIX 17 17 ASP A 339 TYR A 350 1 12 HELIX 18 18 PRO A 356 SER A 360 5 5 HELIX 19 19 PRO A 393 ARG A 402 1 10 HELIX 20 20 ASP A 406 ARG A 408 5 3 HELIX 21 21 ASN A 409 TRP A 422 1 14 HELIX 22 22 GLY A 425 ARG A 437 1 13 HELIX 23 23 VAL A 439 LEU A 445 1 7 HELIX 24 24 GLU A 449 SER A 460 1 12 HELIX 25 25 ASP E 53 SER E 60 1 8 HELIX 26 26 ASP E 71 SER E 87 1 17 HELIX 27 27 CYS E 96 GLY E 103 1 8 HELIX 28 28 PRO E 119 GLY E 124 5 6 HELIX 29 29 LYS E 126 ILE E 130 5 5 HELIX 30 30 THR E 138 GLY E 149 1 12 HELIX 31 31 LYS E 165 GLY E 171 1 7 HELIX 32 32 SER E 180 ASN E 201 1 22 HELIX 33 33 ASP E 213 TRP E 218 1 6 HELIX 34 34 LYS E 220 MET E 225 1 6 HELIX 35 35 GLY E 236 LEU E 241 1 6 HELIX 36 36 SER E 242 ILE E 256 1 15 HELIX 37 37 PHE E 258 ARG E 261 5 4 HELIX 38 38 VAL E 262 ASN E 269 1 8 HELIX 39 39 GLY E 292 TYR E 313 1 22 HELIX 40 40 ASP E 317 LEU E 321 5 5 HELIX 41 41 ASP E 339 TYR E 350 1 12 HELIX 42 42 PRO E 356 SER E 360 5 5 HELIX 43 43 PRO E 393 ARG E 402 1 10 HELIX 44 44 ASP E 406 ARG E 408 5 3 HELIX 45 45 ASN E 409 TRP E 422 1 14 HELIX 46 46 GLY E 425 ARG E 437 1 13 HELIX 47 47 ILE E 441 LEU E 445 5 5 HELIX 48 48 GLU E 449 SER E 460 1 12 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 278 LYS A 283 -1 O THR A 279 N ARG A 7 SHEET 3 A 5 HIS A 270 TYR A 275 -1 N HIS A 273 O TYR A 280 SHEET 4 A 5 LEU A 154 VAL A 158 1 N THR A 156 O LEU A 274 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ALA A 178 N VAL A 155 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 403 THR A 404 -1 O THR A 404 N GLU A 26 SHEET 1 C 2 LYS A 38 PRO A 40 0 SHEET 2 C 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 LYS A 228 PHE A 230 0 SHEET 2 D 3 ASP A 329 TYR A 334 -1 O ALA A 332 N PHE A 230 SHEET 3 D 3 LYS A 322 TYR A 326 -1 N LYS A 322 O SER A 333 SHEET 1 E 2 ASP A 233 TYR A 234 0 SHEET 2 E 2 MET A 354 THR A 355 -1 O THR A 355 N ASP A 233 SHEET 1 F 2 PHE A 377 ALA A 380 0 SHEET 2 F 2 ILE A 388 VAL A 391 -1 O HIS A 389 N ARG A 379 SHEET 1 G 5 GLU E 2 PRO E 8 0 SHEET 2 G 5 LYS E 278 LYS E 283 -1 O THR E 279 N ARG E 7 SHEET 3 G 5 HIS E 270 TYR E 275 -1 N HIS E 273 O TYR E 280 SHEET 4 G 5 LEU E 154 VAL E 158 1 N THR E 156 O LEU E 274 SHEET 5 G 5 LEU E 175 ALA E 178 -1 O ALA E 178 N VAL E 155 SHEET 1 H 2 GLU E 26 PRO E 27 0 SHEET 2 H 2 TRP E 403 THR E 404 -1 O THR E 404 N GLU E 26 SHEET 1 I 2 LYS E 38 PRO E 40 0 SHEET 2 I 2 LEU E 162 SER E 164 -1 O ARG E 163 N GLU E 39 SHEET 1 J 3 LYS E 228 PHE E 230 0 SHEET 2 J 3 ASP E 329 TYR E 334 -1 O ALA E 332 N PHE E 230 SHEET 3 J 3 LYS E 322 TYR E 326 -1 N LYS E 322 O SER E 333 SHEET 1 K 2 ASP E 233 TYR E 234 0 SHEET 2 K 2 MET E 354 THR E 355 -1 O THR E 355 N ASP E 233 SHEET 1 L 2 PHE E 377 ALA E 380 0 SHEET 2 L 2 ILE E 388 VAL E 391 -1 O HIS E 389 N ARG E 379 LINK NE2 HIS A 272 ZN ZN A 501 1555 1555 2.05 LINK SG CYS A 281 ZN ZN A 501 1555 1555 2.44 LINK NE2 HIS E 272 ZN ZN E 501 1555 1555 2.02 LINK SG CYS E 281 ZN ZN E 501 1555 1555 2.39 CISPEP 1 TYR A 118 PRO A 119 0 2.20 CISPEP 2 TYR E 118 PRO E 119 0 2.14 SITE 1 AC1 4 HIS A 270 HIS A 272 CYS A 281 ASP E 146 SITE 1 AC2 4 ASP A 233 TYR A 234 THR A 235 THR A 355 SITE 1 AC3 6 ASP A 233 ASP A 329 VAL A 330 ASP A 358 SITE 2 AC3 6 THR A 372 HOH A 629 SITE 1 AC4 6 ASN A 132 GLN A 134 TYR A 313 TYR A 334 SITE 2 AC4 6 HIS A 336 GLU A 337 SITE 1 AC5 4 ASP A 146 HIS E 270 HIS E 272 CYS E 281 SITE 1 AC6 4 ASP E 233 TYR E 234 THR E 235 THR E 355 SITE 1 AC7 7 ASN E 132 GLN E 134 TYR E 313 ILE E 316 SITE 2 AC7 7 TYR E 334 HIS E 336 GLU E 337 CRYST1 58.768 58.859 97.586 77.88 77.80 79.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017016 -0.003009 -0.003189 0.00000 SCALE2 0.000000 0.017253 -0.003157 0.00000 SCALE3 0.000000 0.000000 0.010658 0.00000