HEADER TRANSFERASE/RNA 12-APR-13 4K4V TITLE POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5+1_FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1749-2209; COMPND 5 SYNONYM: GENOME POLYPROTEIN; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP* COMPND 12 GP*AP*AP*A)-3'); COMPND 13 CHAIN: B, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA/RNA (5'- COMPND 17 R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-D(P*C)-3'); COMPND 18 CHAIN: C, G; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, CHIMERA RNA-DNA, PROTEIN- KEYWDS 2 RNA COMPLEX, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GONG,O.B.PEERSEN REVDAT 3 28-FEB-24 4K4V 1 REMARK SEQADV REVDAT 2 03-JUL-13 4K4V 1 JRNL REVDAT 1 22-MAY-13 4K4V 0 JRNL AUTH P.GONG,M.G.KORTUS,J.C.NIX,R.E.DAVIS,O.B.PEERSEN JRNL TITL STRUCTURES OF COXSACKIEVIRUS, RHINOVIRUS, AND POLIOVIRUS JRNL TITL 2 POLYMERASE ELONGATION COMPLEXES SOLVED BY ENGINEERING RNA JRNL TITL 3 MEDIATED CRYSTAL CONTACTS. JRNL REF PLOS ONE V. 8 60272 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23667424 JRNL DOI 10.1371/JOURNAL.PONE.0060272 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 41503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5133 - 6.4810 0.95 2575 129 0.2112 0.2251 REMARK 3 2 6.4810 - 5.1462 0.98 2637 140 0.1995 0.2258 REMARK 3 3 5.1462 - 4.4962 0.99 2609 160 0.1860 0.2291 REMARK 3 4 4.4962 - 4.0854 0.99 2694 136 0.1796 0.2106 REMARK 3 5 4.0854 - 3.7927 0.98 2614 153 0.2100 0.2473 REMARK 3 6 3.7927 - 3.5692 0.98 2611 146 0.2453 0.3173 REMARK 3 7 3.5692 - 3.3905 0.98 2655 129 0.2836 0.3175 REMARK 3 8 3.3905 - 3.2429 0.98 2657 132 0.2912 0.3780 REMARK 3 9 3.2429 - 3.1181 0.98 2637 144 0.3083 0.3502 REMARK 3 10 3.1181 - 3.0105 0.98 2606 147 0.3308 0.4383 REMARK 3 11 3.0105 - 2.9164 0.98 2628 141 0.3349 0.4118 REMARK 3 12 2.9164 - 2.8331 0.98 2626 134 0.3457 0.3848 REMARK 3 13 2.8331 - 2.7585 0.98 2620 126 0.3664 0.3963 REMARK 3 14 2.7585 - 2.6912 0.97 2664 149 0.3971 0.4335 REMARK 3 15 2.6912 - 2.6300 0.97 2556 148 0.4282 0.4593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8686 REMARK 3 ANGLE : 1.287 11962 REMARK 3 CHIRALITY : 0.054 1338 REMARK 3 PLANARITY : 0.007 1350 REMARK 3 DIHEDRAL : 18.173 3364 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 8.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.8.0L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 47.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 1.990 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8%(V/V) ISOPROPANOL, 0.096 M REMARK 280 TACSIMATE (HAMPTON RESEARCH), 1.92-1.95 M AMMONIUM SULFATE, AND REMARK 280 10-11%(V/V) GLYCEROL AND THEN GRADUALLY EXCHANGED INTO A CRYO REMARK 280 STABILIZER SOLUTION CONTAINING 4.8%(V/V) ISOPROPANOL, 0.096 M REMARK 280 TACSIMATE, 1.95 M AMMONIUM SULFATE AND 19-27% (V/V) XYLITOL WITH REMARK 280 DCTP PRIOR TO FREEZING, PH PH 8.5-9.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 A B 591 REMARK 465 A B 592 REMARK 465 G B 593 REMARK 465 U B 594 REMARK 465 C B 595 REMARK 465 U B 596 REMARK 465 C B 597 REMARK 465 C B 598 REMARK 465 C B 612 REMARK 465 G B 613 REMARK 465 A B 614 REMARK 465 A B 615 REMARK 465 A B 616 REMARK 465 U C 685 REMARK 465 G C 686 REMARK 465 U C 687 REMARK 465 U C 688 REMARK 465 C C 689 REMARK 465 G C 690 REMARK 465 A C 691 REMARK 465 SER E 463 REMARK 465 SER E 464 REMARK 465 SER E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 HIS E 469 REMARK 465 HIS E 470 REMARK 465 HIS E 471 REMARK 465 A F 591 REMARK 465 A F 592 REMARK 465 G F 593 REMARK 465 U F 594 REMARK 465 C F 595 REMARK 465 U F 596 REMARK 465 C F 597 REMARK 465 C F 598 REMARK 465 C F 612 REMARK 465 G F 613 REMARK 465 A F 614 REMARK 465 A F 615 REMARK 465 A F 616 REMARK 465 U G 685 REMARK 465 G G 686 REMARK 465 U G 687 REMARK 465 U G 688 REMARK 465 C G 689 REMARK 465 G G 690 REMARK 465 A G 691 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 15 O HOH A 516 1.95 REMARK 500 OE1 GLN A 84 NH2 ARG A 306 2.04 REMARK 500 OH TYR A 120 OD1 ASN A 182 2.10 REMARK 500 NH2 ARG A 455 O HOH A 519 2.10 REMARK 500 OH TYR E 120 OD1 ASN E 182 2.10 REMARK 500 O HOH A 513 O HOH A 514 2.12 REMARK 500 OD2 ASP E 339 OG SER E 341 2.12 REMARK 500 OD2 ASP E 381 OH TYR E 454 2.17 REMARK 500 O LEU A 445 O HOH A 526 2.17 REMARK 500 O GLN A 84 OG SER A 87 2.18 REMARK 500 O LEU A 268 O HOH A 511 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O VAL A 12 OH TYR E 148 1446 1.91 REMARK 500 OH TYR A 148 O VAL E 12 1446 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G G 697 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 98.83 -63.37 REMARK 500 SER A 9 -47.41 -12.67 REMARK 500 LYS A 66 -98.46 -95.64 REMARK 500 VAL A 70 100.52 -42.86 REMARK 500 ASP A 89 78.56 54.82 REMARK 500 LYS A 172 54.64 -102.96 REMARK 500 LEU A 224 28.38 -73.48 REMARK 500 GLU A 227 -95.61 -73.66 REMARK 500 TYR A 237 -60.98 -11.01 REMARK 500 ASP A 238 -72.08 -60.01 REMARK 500 ALA A 239 16.57 -63.74 REMARK 500 PRO A 243 -38.53 -37.95 REMARK 500 LYS A 276 -107.42 54.47 REMARK 500 SER A 288 -69.25 65.86 REMARK 500 THR A 307 -76.71 -57.94 REMARK 500 PRO A 335 -9.88 -58.68 REMARK 500 GLU A 337 102.72 -57.31 REMARK 500 ASP A 339 92.64 -10.81 REMARK 500 LYS A 348 -18.54 -42.11 REMARK 500 TYR A 350 28.07 -75.63 REMARK 500 LYS A 359 9.45 50.90 REMARK 500 ASP A 406 107.64 -179.48 REMARK 500 PRO E 8 98.76 -62.39 REMARK 500 SER E 9 -50.97 -7.80 REMARK 500 LYS E 66 -101.94 -94.58 REMARK 500 VAL E 70 97.36 -43.00 REMARK 500 ASP E 89 78.88 57.42 REMARK 500 ALA E 109 152.54 -49.53 REMARK 500 LYS E 172 56.06 -65.01 REMARK 500 LEU E 224 27.41 -73.90 REMARK 500 GLU E 227 -151.00 -72.64 REMARK 500 LYS E 228 106.08 -1.92 REMARK 500 TYR E 237 -58.65 -13.91 REMARK 500 ASP E 238 -70.86 -59.26 REMARK 500 ALA E 239 27.50 -72.22 REMARK 500 PRO E 243 -36.57 -37.79 REMARK 500 LYS E 276 -107.64 54.81 REMARK 500 SER E 288 -73.84 20.42 REMARK 500 THR E 307 -75.83 -54.20 REMARK 500 LYS E 348 -8.18 -49.29 REMARK 500 TYR E 350 26.91 -78.96 REMARK 500 LYS E 359 9.48 50.92 REMARK 500 ASP E 406 105.05 -179.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OL6 RELATED DB: PDB REMARK 900 RELATED ID: 1RA6 RELATED DB: PDB REMARK 900 RELATED ID: 4K4S RELATED DB: PDB REMARK 900 RELATED ID: 4K4T RELATED DB: PDB REMARK 900 RELATED ID: 4K4U RELATED DB: PDB REMARK 900 RELATED ID: 4K4W RELATED DB: PDB REMARK 900 RELATED ID: 4K4X RELATED DB: PDB REMARK 900 RELATED ID: 4K4Y RELATED DB: PDB REMARK 900 RELATED ID: 4K4Z RELATED DB: PDB REMARK 900 RELATED ID: 4K50 RELATED DB: PDB DBREF 4K4V A 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4V E 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4V B 591 616 PDB 4K4V 4K4V 591 616 DBREF 4K4V F 591 616 PDB 4K4V 4K4V 591 616 DBREF 4K4V C 685 701 PDB 4K4V 4K4V 685 701 DBREF 4K4V G 685 701 PDB 4K4V 4K4V 685 701 SEQADV 4K4V MET A 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4V ASP A 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4V GLY A 462 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER A 463 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER A 464 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER A 465 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 466 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 467 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 468 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 469 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 470 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS A 471 UNP P03300 EXPRESSION TAG SEQADV 4K4V MET E 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4V ASP E 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4V GLY E 462 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER E 463 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER E 464 UNP P03300 EXPRESSION TAG SEQADV 4K4V SER E 465 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 466 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 467 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 468 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 469 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 470 UNP P03300 EXPRESSION TAG SEQADV 4K4V HIS E 471 UNP P03300 EXPRESSION TAG SEQRES 1 A 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 471 PRO SER GLY MET SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 A 471 HIS HIS HIS SEQRES 1 B 26 A A G U C U C C A G G U C SEQRES 2 B 26 U C U C U C G U C G A A A SEQRES 1 C 17 U G U U C G A C G A G A G SEQRES 2 C 17 A G A DC SEQRES 1 E 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 E 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 E 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 E 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 E 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 E 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 E 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 E 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 E 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 E 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 E 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 E 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 E 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 E 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 E 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 E 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 E 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 E 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 E 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 E 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 E 471 PRO SER GLY MET SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 E 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 E 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 E 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 E 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 E 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 E 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 E 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 E 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 E 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 E 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 E 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 E 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 E 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 E 471 HIS HIS HIS SEQRES 1 F 26 A A G U C U C C A G G U C SEQRES 2 F 26 U C U C U C G U C G A A A SEQRES 1 G 17 U G U U C G A C G A G A G SEQRES 2 G 17 A G A DC HET SO4 E 501 5 HET SO4 E 502 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *44(H2 O) HELIX 1 1 PRO A 8 VAL A 12 5 5 HELIX 2 2 ASP A 53 SER A 60 1 8 HELIX 3 3 ASP A 71 SER A 87 1 17 HELIX 4 4 CYS A 96 TYR A 102 1 7 HELIX 5 5 PRO A 119 GLY A 124 1 6 HELIX 6 6 LYS A 126 LEU A 131 1 6 HELIX 7 7 THR A 138 GLY A 149 1 12 HELIX 8 8 SER A 164 GLN A 170 1 7 HELIX 9 9 SER A 180 ASN A 201 1 22 HELIX 10 10 ASP A 213 ILE A 221 1 9 HELIX 11 11 GLY A 236 LEU A 241 1 6 HELIX 12 12 SER A 242 ILE A 256 1 15 HELIX 13 13 PHE A 258 ARG A 261 5 4 HELIX 14 14 VAL A 262 ASN A 269 1 8 HELIX 15 15 GLY A 292 TYR A 313 1 22 HELIX 16 16 ASP A 317 LEU A 321 5 5 HELIX 17 17 ASP A 339 TYR A 350 1 12 HELIX 18 18 PRO A 393 ARG A 402 1 10 HELIX 19 19 ASP A 406 ARG A 408 5 3 HELIX 20 20 ASN A 409 TRP A 422 1 14 HELIX 21 21 GLY A 425 SER A 438 1 14 HELIX 22 22 ILE A 441 LEU A 445 5 5 HELIX 23 23 GLU A 449 GLY A 462 1 14 HELIX 24 24 PRO E 8 GLY E 13 5 6 HELIX 25 25 ASP E 53 SER E 60 1 8 HELIX 26 26 ASP E 71 SER E 87 1 17 HELIX 27 27 CYS E 96 TYR E 102 1 7 HELIX 28 28 LYS E 126 LEU E 131 1 6 HELIX 29 29 THR E 138 GLY E 149 1 12 HELIX 30 30 LYS E 165 GLN E 170 1 6 HELIX 31 31 SER E 180 ASN E 201 1 22 HELIX 32 32 ASP E 213 TRP E 218 1 6 HELIX 33 33 TYR E 237 LEU E 241 5 5 HELIX 34 34 SER E 242 GLY E 257 1 16 HELIX 35 35 PHE E 258 ARG E 261 5 4 HELIX 36 36 VAL E 262 ASN E 269 1 8 HELIX 37 37 GLY E 292 TYR E 313 1 22 HELIX 38 38 ASP E 317 LEU E 321 5 5 HELIX 39 39 ASP E 339 TYR E 350 1 12 HELIX 40 40 PRO E 393 ARG E 402 1 10 HELIX 41 41 ASP E 406 ARG E 408 5 3 HELIX 42 42 ASN E 409 TRP E 422 1 14 HELIX 43 43 GLY E 425 ARG E 437 1 13 HELIX 44 44 ILE E 441 LEU E 445 5 5 HELIX 45 45 GLU E 449 SER E 460 1 12 SHEET 1 A 5 GLU A 2 ARG A 7 0 SHEET 2 A 5 LYS A 278 LYS A 283 -1 O LYS A 283 N GLU A 2 SHEET 3 A 5 HIS A 270 TYR A 275 -1 N TYR A 275 O LYS A 278 SHEET 4 A 5 LEU A 154 VAL A 158 1 N LEU A 154 O HIS A 272 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 403 THR A 404 -1 O THR A 404 N GLU A 26 SHEET 1 C 2 GLU A 39 PRO A 40 0 SHEET 2 C 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 D 2 GLY A 103 THR A 104 0 SHEET 2 D 2 LEU A 107 GLU A 108 -1 O LEU A 107 N THR A 104 SHEET 1 E 3 LEU A 229 PHE A 230 0 SHEET 2 E 3 ASP A 329 SER A 333 -1 O ALA A 332 N PHE A 230 SHEET 3 E 3 LYS A 322 TYR A 326 -1 N TYR A 326 O ASP A 329 SHEET 1 F 2 PHE A 232 TYR A 234 0 SHEET 2 F 2 MET A 354 PRO A 356 -1 O THR A 355 N ASP A 233 SHEET 1 G 2 PHE A 377 ALA A 380 0 SHEET 2 G 2 ILE A 388 VAL A 391 -1 O HIS A 389 N ARG A 379 SHEET 1 H 5 GLU E 2 ARG E 7 0 SHEET 2 H 5 LYS E 278 LYS E 283 -1 O LYS E 283 N GLU E 2 SHEET 3 H 5 HIS E 270 TYR E 275 -1 N TYR E 275 O LYS E 278 SHEET 4 H 5 LEU E 154 VAL E 158 1 N LEU E 154 O HIS E 272 SHEET 5 H 5 LEU E 175 ALA E 178 -1 O ILE E 176 N TYR E 157 SHEET 1 I 2 GLU E 26 PRO E 27 0 SHEET 2 I 2 TRP E 403 THR E 404 -1 O THR E 404 N GLU E 26 SHEET 1 J 2 LYS E 38 PRO E 40 0 SHEET 2 J 2 LEU E 162 SER E 164 -1 O ARG E 163 N GLU E 39 SHEET 1 K 2 GLY E 103 THR E 104 0 SHEET 2 K 2 LEU E 107 GLU E 108 -1 O LEU E 107 N THR E 104 SHEET 1 L 3 LEU E 229 PHE E 230 0 SHEET 2 L 3 ASP E 329 SER E 333 -1 O ALA E 332 N PHE E 230 SHEET 3 L 3 LYS E 322 TYR E 326 -1 N TYR E 326 O ASP E 329 SHEET 1 M 2 PHE E 232 TYR E 234 0 SHEET 2 M 2 MET E 354 PRO E 356 -1 O THR E 355 N ASP E 233 SHEET 1 N 2 PHE E 377 ALA E 380 0 SHEET 2 N 2 ILE E 388 VAL E 391 -1 O HIS E 389 N ARG E 379 CISPEP 1 TYR A 118 PRO A 119 0 -0.07 CISPEP 2 TYR E 118 PRO E 119 0 -0.67 SITE 1 AC1 3 ARG E 415 PRO E 448 ARG E 456 SITE 1 AC2 2 ARG E 455 ARG E 456 CRYST1 63.519 63.475 101.946 73.48 73.44 73.64 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015743 -0.004620 -0.003750 0.00000 SCALE2 0.000000 0.016419 -0.003737 0.00000 SCALE3 0.000000 0.000000 0.010495 0.00000