data_4K6E # _entry.id 4K6E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4K6E pdb_00004k6e 10.2210/pdb4k6e/pdb RCSB RCSB078948 ? ? WWPDB D_1000078948 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-21 2 'Structure model' 1 1 2013-09-25 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4K6E _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-04-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aglietti, R.A.' 1 'Floor, S.N.' 2 'Gross, J.D.' 3 # _citation.id primary _citation.title 'Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1571 _citation.page_last 1580 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23911090 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.06.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aglietti, R.A.' 1 ? primary 'Floor, S.N.' 2 ? primary 'McClendon, C.L.' 3 ? primary 'Jacobson, M.P.' 4 ? primary 'Gross, J.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mRNA-decapping enzyme subunit 2' 17120.549 1 3.-.-.- ? 'Dcp2 Nudix domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 45 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein PSU1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFL ISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _entity_poly.pdbx_seq_one_letter_code_can ;SIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFL ISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 PRO n 1 4 VAL n 1 5 ARG n 1 6 GLY n 1 7 ALA n 1 8 ALA n 1 9 ILE n 1 10 PHE n 1 11 ASN n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 SER n 1 16 LYS n 1 17 ILE n 1 18 LEU n 1 19 LEU n 1 20 VAL n 1 21 GLN n 1 22 GLY n 1 23 THR n 1 24 GLU n 1 25 SER n 1 26 ASP n 1 27 SER n 1 28 TRP n 1 29 SER n 1 30 PHE n 1 31 PRO n 1 32 ARG n 1 33 GLY n 1 34 LYS n 1 35 ILE n 1 36 SER n 1 37 LYS n 1 38 ASP n 1 39 GLU n 1 40 ASN n 1 41 ASP n 1 42 ILE n 1 43 ASP n 1 44 CYS n 1 45 CYS n 1 46 ILE n 1 47 ARG n 1 48 GLU n 1 49 VAL n 1 50 LYS n 1 51 GLU n 1 52 GLU n 1 53 ILE n 1 54 GLY n 1 55 PHE n 1 56 ASP n 1 57 LEU n 1 58 THR n 1 59 ASP n 1 60 TYR n 1 61 ILE n 1 62 ASP n 1 63 ASP n 1 64 ASN n 1 65 GLN n 1 66 PHE n 1 67 ILE n 1 68 GLU n 1 69 ARG n 1 70 ASN n 1 71 ILE n 1 72 GLN n 1 73 GLY n 1 74 LYS n 1 75 ASN n 1 76 TYR n 1 77 LYS n 1 78 ILE n 1 79 PHE n 1 80 LEU n 1 81 ILE n 1 82 SER n 1 83 GLY n 1 84 VAL n 1 85 SER n 1 86 GLU n 1 87 VAL n 1 88 PHE n 1 89 ASN n 1 90 PHE n 1 91 LYS n 1 92 PRO n 1 93 GLN n 1 94 VAL n 1 95 ARG n 1 96 ASN n 1 97 GLU n 1 98 ILE n 1 99 ASP n 1 100 LYS n 1 101 ILE n 1 102 GLU n 1 103 TRP n 1 104 PHE n 1 105 ASP n 1 106 PHE n 1 107 LYS n 1 108 LYS n 1 109 ILE n 1 110 SER n 1 111 LYS n 1 112 THR n 1 113 MET n 1 114 TYR n 1 115 LYS n 1 116 SER n 1 117 ASN n 1 118 ILE n 1 119 LYS n 1 120 TYR n 1 121 TYR n 1 122 LEU n 1 123 ILE n 1 124 ASN n 1 125 SER n 1 126 MET n 1 127 MET n 1 128 ARG n 1 129 PRO n 1 130 LEU n 1 131 SER n 1 132 MET n 1 133 TRP n 1 134 LEU n 1 135 ARG n 1 136 HIS n 1 137 GLN n 1 138 ARG n 1 139 GLN n 1 140 ILE n 1 141 LYS n 1 142 ASN n 1 143 GLU n 1 144 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DCP2, N1917, PSU1, YNL118C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-Duet1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 102 102 SER SER A . n A 1 2 ILE 2 103 103 ILE ILE A . n A 1 3 PRO 3 104 104 PRO PRO A . n A 1 4 VAL 4 105 105 VAL VAL A . n A 1 5 ARG 5 106 106 ARG ARG A . n A 1 6 GLY 6 107 107 GLY GLY A . n A 1 7 ALA 7 108 108 ALA ALA A . n A 1 8 ALA 8 109 109 ALA ALA A . n A 1 9 ILE 9 110 110 ILE ILE A . n A 1 10 PHE 10 111 111 PHE PHE A . n A 1 11 ASN 11 112 112 ASN ASN A . n A 1 12 GLU 12 113 113 GLU GLU A . n A 1 13 ASN 13 114 114 ASN ASN A . n A 1 14 LEU 14 115 115 LEU LEU A . n A 1 15 SER 15 116 116 SER SER A . n A 1 16 LYS 16 117 117 LYS LYS A . n A 1 17 ILE 17 118 118 ILE ILE A . n A 1 18 LEU 18 119 119 LEU LEU A . n A 1 19 LEU 19 120 120 LEU LEU A . n A 1 20 VAL 20 121 121 VAL VAL A . n A 1 21 GLN 21 122 122 GLN GLN A . n A 1 22 GLY 22 123 123 GLY GLY A . n A 1 23 THR 23 124 124 THR THR A . n A 1 24 GLU 24 125 125 GLU GLU A . n A 1 25 SER 25 126 126 SER SER A . n A 1 26 ASP 26 127 127 ASP ASP A . n A 1 27 SER 27 128 128 SER SER A . n A 1 28 TRP 28 129 129 TRP TRP A . n A 1 29 SER 29 130 130 SER SER A . n A 1 30 PHE 30 131 131 PHE PHE A . n A 1 31 PRO 31 132 132 PRO PRO A . n A 1 32 ARG 32 133 133 ARG ARG A . n A 1 33 GLY 33 134 134 GLY GLY A . n A 1 34 LYS 34 135 135 LYS LYS A . n A 1 35 ILE 35 136 136 ILE ILE A . n A 1 36 SER 36 137 137 SER SER A . n A 1 37 LYS 37 138 138 LYS LYS A . n A 1 38 ASP 38 139 139 ASP ASP A . n A 1 39 GLU 39 140 140 GLU GLU A . n A 1 40 ASN 40 141 141 ASN ASN A . n A 1 41 ASP 41 142 142 ASP ASP A . n A 1 42 ILE 42 143 143 ILE ILE A . n A 1 43 ASP 43 144 144 ASP ASP A . n A 1 44 CYS 44 145 145 CYS CYS A . n A 1 45 CYS 45 146 146 CYS CYS A . n A 1 46 ILE 46 147 147 ILE ILE A . n A 1 47 ARG 47 148 148 ARG ARG A . n A 1 48 GLU 48 149 149 GLU GLU A . n A 1 49 VAL 49 150 150 VAL VAL A . n A 1 50 LYS 50 151 151 LYS LYS A . n A 1 51 GLU 51 152 152 GLU GLU A . n A 1 52 GLU 52 153 153 GLU GLU A . n A 1 53 ILE 53 154 154 ILE ILE A . n A 1 54 GLY 54 155 155 GLY GLY A . n A 1 55 PHE 55 156 156 PHE PHE A . n A 1 56 ASP 56 157 157 ASP ASP A . n A 1 57 LEU 57 158 158 LEU LEU A . n A 1 58 THR 58 159 159 THR THR A . n A 1 59 ASP 59 160 160 ASP ASP A . n A 1 60 TYR 60 161 161 TYR TYR A . n A 1 61 ILE 61 162 162 ILE ILE A . n A 1 62 ASP 62 163 163 ASP ASP A . n A 1 63 ASP 63 164 164 ASP ASP A . n A 1 64 ASN 64 165 165 ASN ASN A . n A 1 65 GLN 65 166 166 GLN GLN A . n A 1 66 PHE 66 167 167 PHE PHE A . n A 1 67 ILE 67 168 168 ILE ILE A . n A 1 68 GLU 68 169 169 GLU GLU A . n A 1 69 ARG 69 170 170 ARG ARG A . n A 1 70 ASN 70 171 171 ASN ASN A . n A 1 71 ILE 71 172 172 ILE ILE A . n A 1 72 GLN 72 173 173 GLN GLN A . n A 1 73 GLY 73 174 174 GLY GLY A . n A 1 74 LYS 74 175 175 LYS LYS A . n A 1 75 ASN 75 176 176 ASN ASN A . n A 1 76 TYR 76 177 177 TYR TYR A . n A 1 77 LYS 77 178 178 LYS LYS A . n A 1 78 ILE 78 179 179 ILE ILE A . n A 1 79 PHE 79 180 180 PHE PHE A . n A 1 80 LEU 80 181 181 LEU LEU A . n A 1 81 ILE 81 182 182 ILE ILE A . n A 1 82 SER 82 183 183 SER SER A . n A 1 83 GLY 83 184 184 GLY GLY A . n A 1 84 VAL 84 185 185 VAL VAL A . n A 1 85 SER 85 186 186 SER SER A . n A 1 86 GLU 86 187 187 GLU GLU A . n A 1 87 VAL 87 188 188 VAL VAL A . n A 1 88 PHE 88 189 189 PHE PHE A . n A 1 89 ASN 89 190 190 ASN ASN A . n A 1 90 PHE 90 191 191 PHE PHE A . n A 1 91 LYS 91 192 192 LYS LYS A . n A 1 92 PRO 92 193 193 PRO PRO A . n A 1 93 GLN 93 194 194 GLN GLN A . n A 1 94 VAL 94 195 195 VAL VAL A . n A 1 95 ARG 95 196 196 ARG ARG A . n A 1 96 ASN 96 197 197 ASN ASN A . n A 1 97 GLU 97 198 198 GLU GLU A . n A 1 98 ILE 98 199 199 ILE ILE A . n A 1 99 ASP 99 200 200 ASP ASP A . n A 1 100 LYS 100 201 201 LYS LYS A . n A 1 101 ILE 101 202 202 ILE ILE A . n A 1 102 GLU 102 203 203 GLU GLU A . n A 1 103 TRP 103 204 204 TRP TRP A . n A 1 104 PHE 104 205 205 PHE PHE A . n A 1 105 ASP 105 206 206 ASP ASP A . n A 1 106 PHE 106 207 207 PHE PHE A . n A 1 107 LYS 107 208 208 LYS LYS A . n A 1 108 LYS 108 209 209 LYS LYS A . n A 1 109 ILE 109 210 210 ILE ILE A . n A 1 110 SER 110 211 211 SER SER A . n A 1 111 LYS 111 212 212 LYS LYS A . n A 1 112 THR 112 213 213 THR THR A . n A 1 113 MET 113 214 214 MET MET A . n A 1 114 TYR 114 215 215 TYR TYR A . n A 1 115 LYS 115 216 216 LYS LYS A . n A 1 116 SER 116 217 217 SER SER A . n A 1 117 ASN 117 218 218 ASN ASN A . n A 1 118 ILE 118 219 219 ILE ILE A . n A 1 119 LYS 119 220 220 LYS LYS A . n A 1 120 TYR 120 221 221 TYR TYR A . n A 1 121 TYR 121 222 222 TYR TYR A . n A 1 122 LEU 122 223 223 LEU LEU A . n A 1 123 ILE 123 224 224 ILE ILE A . n A 1 124 ASN 124 225 225 ASN ASN A . n A 1 125 SER 125 226 226 SER SER A . n A 1 126 MET 126 227 227 MET MET A . n A 1 127 MET 127 228 228 MET MET A . n A 1 128 ARG 128 229 229 ARG ARG A . n A 1 129 PRO 129 230 230 PRO PRO A . n A 1 130 LEU 130 231 231 LEU LEU A . n A 1 131 SER 131 232 232 SER SER A . n A 1 132 MET 132 233 233 MET MET A . n A 1 133 TRP 133 234 234 TRP TRP A . n A 1 134 LEU 134 235 235 LEU LEU A . n A 1 135 ARG 135 236 236 ARG ARG A . n A 1 136 HIS 136 237 237 HIS HIS A . n A 1 137 GLN 137 238 238 GLN GLN A . n A 1 138 ARG 138 239 239 ARG ARG A . n A 1 139 GLN 139 240 240 GLN GLN A . n A 1 140 ILE 140 241 241 ILE ILE A . n A 1 141 LYS 141 242 242 LYS LYS A . n A 1 142 ASN 142 243 243 ASN ASN A . n A 1 143 GLU 143 244 244 GLU GLU A . n A 1 144 ASP 144 245 245 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 301 1 MG MG A . C 3 HOH 1 401 2 HOH HOH A . C 3 HOH 2 402 4 HOH HOH A . C 3 HOH 3 403 5 HOH HOH A . C 3 HOH 4 404 6 HOH HOH A . C 3 HOH 5 405 7 HOH HOH A . C 3 HOH 6 406 8 HOH HOH A . C 3 HOH 7 407 9 HOH HOH A . C 3 HOH 8 408 10 HOH HOH A . C 3 HOH 9 409 11 HOH HOH A . C 3 HOH 10 410 12 HOH HOH A . C 3 HOH 11 411 13 HOH HOH A . C 3 HOH 12 412 14 HOH HOH A . C 3 HOH 13 413 15 HOH HOH A . C 3 HOH 14 414 16 HOH HOH A . C 3 HOH 15 415 17 HOH HOH A . C 3 HOH 16 416 18 HOH HOH A . C 3 HOH 17 417 20 HOH HOH A . C 3 HOH 18 418 21 HOH HOH A . C 3 HOH 19 419 22 HOH HOH A . C 3 HOH 20 420 23 HOH HOH A . C 3 HOH 21 421 24 HOH HOH A . C 3 HOH 22 422 27 HOH HOH A . C 3 HOH 23 423 28 HOH HOH A . C 3 HOH 24 424 30 HOH HOH A . C 3 HOH 25 425 31 HOH HOH A . C 3 HOH 26 426 32 HOH HOH A . C 3 HOH 27 427 33 HOH HOH A . C 3 HOH 28 428 35 HOH HOH A . C 3 HOH 29 429 37 HOH HOH A . C 3 HOH 30 430 40 HOH HOH A . C 3 HOH 31 431 41 HOH HOH A . C 3 HOH 32 432 43 HOH HOH A . C 3 HOH 33 433 44 HOH HOH A . C 3 HOH 34 434 46 HOH HOH A . C 3 HOH 35 435 50 HOH HOH A . C 3 HOH 36 436 51 HOH HOH A . C 3 HOH 37 437 53 HOH HOH A . C 3 HOH 38 438 56 HOH HOH A . C 3 HOH 39 439 59 HOH HOH A . C 3 HOH 40 440 65 HOH HOH A . C 3 HOH 41 441 70 HOH HOH A . C 3 HOH 42 442 77 HOH HOH A . C 3 HOH 43 443 89 HOH HOH A . C 3 HOH 44 444 90 HOH HOH A . C 3 HOH 45 445 91 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.5.3 'Wed Feb 27 06:49:19 2013 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 85.054 _cell.length_b 85.054 _cell.length_c 48.749 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4K6E _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 62' _symmetry.entry_id 4K6E _symmetry.Int_Tables_number 171 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4K6E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.4 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;10 mM HEPES, 1 mM DTT, 50 mM NaCl, 100 mM Na2SO4, 0.1 M Mg Formate, 20% Peg 3350, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2011-04-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95372 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength 0.95372 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 # _reflns.entry_id 4K6E _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.000 _reflns.number_obs 11889 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_chi_squared 1.110 _reflns.pdbx_redundancy 7.300 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.140 ? ? ? 0.557 ? ? 0.812 7.300 ? 596 99.700 1 1 2.140 2.180 ? ? ? 0.525 ? ? 0.874 7.400 ? 589 100.000 2 1 2.180 2.220 ? ? ? 0.389 ? ? 0.839 7.300 ? 586 99.700 3 1 2.220 2.260 ? ? ? 0.372 ? ? 0.874 7.500 ? 584 100.000 4 1 2.260 2.310 ? ? ? 0.341 ? ? 0.902 7.300 ? 594 100.000 5 1 2.310 2.370 ? ? ? 0.300 ? ? 0.973 7.400 ? 583 99.800 6 1 2.370 2.420 ? ? ? 0.269 ? ? 0.946 7.400 ? 594 100.000 7 1 2.420 2.490 ? ? ? 0.223 ? ? 0.959 7.500 ? 586 99.800 8 1 2.490 2.560 ? ? ? 0.212 ? ? 0.971 7.300 ? 587 100.000 9 1 2.560 2.650 ? ? ? 0.186 ? ? 0.944 7.400 ? 592 99.800 10 1 2.650 2.740 ? ? ? 0.159 ? ? 1.011 7.400 ? 596 100.000 11 1 2.740 2.850 ? ? ? 0.126 ? ? 1.076 7.400 ? 590 100.000 12 1 2.850 2.980 ? ? ? 0.110 ? ? 1.184 7.300 ? 585 100.000 13 1 2.980 3.140 ? ? ? 0.096 ? ? 1.408 7.300 ? 600 100.000 14 1 3.140 3.330 ? ? ? 0.086 ? ? 1.572 7.300 ? 591 100.000 15 1 3.330 3.590 ? ? ? 0.069 ? ? 1.849 7.200 ? 600 100.000 16 1 3.590 3.950 ? ? ? 0.055 ? ? 1.633 7.200 ? 596 100.000 17 1 3.950 4.520 ? ? ? 0.038 ? ? 1.205 7.000 ? 604 100.000 18 1 4.520 5.700 ? ? ? 0.033 ? ? 1.050 7.200 ? 604 99.800 19 1 5.700 50.000 ? ? ? 0.032 ? ? 1.133 7.100 ? 632 100.000 20 1 # _refine.entry_id 4K6E _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 42.5270 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.7700 _refine.ls_number_reflns_obs 11509 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1568 _refine.ls_R_factor_R_work 0.1530 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1910 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9800 _refine.ls_number_reflns_R_free 1149 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 43.2572 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8833 _refine.B_iso_max 119.650 _refine.B_iso_min 17.850 _refine.pdbx_overall_phase_error 18.7100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1203 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 1249 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 42.5270 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1227 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1647 1.085 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 173 0.079 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 212 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 474 14.385 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.100 2.1960 8 92.0000 1234 . 0.1853 0.2237 . 138 . 1372 . . 'X-RAY DIFFRACTION' 2.1960 2.3118 8 94.0000 1261 . 0.1714 0.2245 . 129 . 1390 . . 'X-RAY DIFFRACTION' 2.3118 2.4566 8 96.0000 1268 . 0.1676 0.2165 . 142 . 1410 . . 'X-RAY DIFFRACTION' 2.4566 2.6462 8 96.0000 1267 . 0.1701 0.2421 . 140 . 1407 . . 'X-RAY DIFFRACTION' 2.6462 2.9125 8 98.0000 1293 . 0.1766 0.1975 . 145 . 1438 . . 'X-RAY DIFFRACTION' 2.9125 3.3338 8 99.0000 1326 . 0.1694 0.2052 . 144 . 1470 . . 'X-RAY DIFFRACTION' 3.3338 4.1996 8 100.0000 1337 . 0.1356 0.1782 . 154 . 1491 . . 'X-RAY DIFFRACTION' 4.1996 42.5357 8 100.0000 1374 . 0.1315 0.1602 . 157 . 1531 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4K6E _struct.title 'Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain in complex with Mg' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K6E _struct_keywords.text 'Nudix, mRNA decapping, Nudix hydrolase, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCP2_YEAST _struct_ref.pdbx_db_accession P53550 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFL ISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _struct_ref.pdbx_align_begin 102 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4K6E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P53550 _struct_ref_seq.db_align_beg 102 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 102 _struct_ref_seq.pdbx_auth_seq_align_end 245 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 40 ? GLY A 54 ? ASN A 141 GLY A 155 1 ? 15 HELX_P HELX_P2 2 PHE A 106 ? THR A 112 ? PHE A 207 THR A 213 1 ? 7 HELX_P HELX_P3 3 MET A 113 ? SER A 116 ? MET A 214 SER A 217 5 ? 4 HELX_P HELX_P4 4 LEU A 122 ? SER A 125 ? LEU A 223 SER A 226 5 ? 4 HELX_P HELX_P5 5 MET A 126 ? ILE A 140 ? MET A 227 ILE A 241 1 ? 15 HELX_P HELX_P6 6 LYS A 141 ? ASP A 144 ? LYS A 242 ASP A 245 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 48 OE1 ? ? ? 1_555 B MG . MG ? ? A GLU 149 A MG 301 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 301 A HOH 402 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 301 A HOH 405 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 301 A HOH 441 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 301 A HOH 443 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 301 A HOH 444 1_555 ? ? ? ? ? ? ? 2.124 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 48 ? A GLU 149 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 402 ? 1_555 90.2 ? 2 OE1 ? A GLU 48 ? A GLU 149 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 405 ? 1_555 175.4 ? 3 O ? C HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 405 ? 1_555 94.3 ? 4 OE1 ? A GLU 48 ? A GLU 149 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 441 ? 1_555 97.1 ? 5 O ? C HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 441 ? 1_555 89.6 ? 6 O ? C HOH . ? A HOH 405 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 441 ? 1_555 82.3 ? 7 OE1 ? A GLU 48 ? A GLU 149 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 443 ? 1_555 88.2 ? 8 O ? C HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 443 ? 1_555 177.2 ? 9 O ? C HOH . ? A HOH 405 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 443 ? 1_555 87.3 ? 10 O ? C HOH . ? A HOH 441 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 443 ? 1_555 92.8 ? 11 OE1 ? A GLU 48 ? A GLU 149 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 444 ? 1_555 92.2 ? 12 O ? C HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 444 ? 1_555 87.4 ? 13 O ? C HOH . ? A HOH 405 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 444 ? 1_555 88.7 ? 14 O ? C HOH . ? A HOH 441 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 444 ? 1_555 170.3 ? 15 O ? C HOH . ? A HOH 443 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? C HOH . ? A HOH 444 ? 1_555 90.4 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 28 ? SER A 29 ? TRP A 129 SER A 130 A 2 LYS A 16 ? GLY A 22 ? LYS A 117 GLY A 123 A 3 VAL A 4 ? ASN A 11 ? VAL A 105 ASN A 112 A 4 LYS A 74 ? VAL A 84 ? LYS A 175 VAL A 185 A 5 PHE A 66 ? ILE A 71 ? PHE A 167 ILE A 172 B 1 ARG A 32 ? LYS A 34 ? ARG A 133 LYS A 135 B 2 VAL A 4 ? ASN A 11 ? VAL A 105 ASN A 112 B 3 LYS A 16 ? GLY A 22 ? LYS A 117 GLY A 123 B 4 ILE A 98 ? ASP A 105 ? ILE A 199 ASP A 206 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 29 ? O SER A 130 N VAL A 20 ? N VAL A 121 A 2 3 O LEU A 18 ? O LEU A 119 N ILE A 9 ? N ILE A 110 A 3 4 N ALA A 8 ? N ALA A 109 O PHE A 79 ? O PHE A 180 A 4 5 O ILE A 78 ? O ILE A 179 N ILE A 67 ? N ILE A 168 B 1 2 O GLY A 33 ? O GLY A 134 N ARG A 5 ? N ARG A 106 B 2 3 N ILE A 9 ? N ILE A 110 O LEU A 18 ? O LEU A 119 B 3 4 N GLN A 21 ? N GLN A 122 O ASP A 99 ? O ASP A 200 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 48 ? GLU A 149 . ? 1_555 ? 2 AC1 6 HOH C . ? HOH A 402 . ? 1_555 ? 3 AC1 6 HOH C . ? HOH A 405 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 441 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 443 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 444 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 112 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 187 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 197 ? ? 57.59 19.53 2 1 MET A 214 ? ? -42.39 -90.95 3 1 LYS A 216 ? ? -150.99 -15.37 4 1 LEU A 223 ? ? 70.84 -51.40 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 26.1531 19.6352 36.2532 0.2204 0.2365 0.2287 0.0280 -0.0444 -0.0644 2.9124 4.8987 4.1553 -0.9638 -0.5278 0.9789 -0.0130 -0.2704 0.2054 0.3036 -0.0660 0.3417 -0.0663 -0.2474 -0.2936 'X-RAY DIFFRACTION' 2 ? refined 31.2301 12.4704 46.9030 0.3713 0.2444 0.2561 0.0465 0.0614 0.0386 5.2785 4.3458 2.4371 1.2080 1.4792 0.5840 -0.0036 -0.1643 -0.0791 -0.6623 -0.7272 0.0156 0.7527 0.7230 0.3097 'X-RAY DIFFRACTION' 3 ? refined 21.8271 16.3875 46.1123 0.3041 0.3668 0.4097 -0.0593 0.0974 -0.0997 2.7701 3.3881 2.7915 -0.1666 0.2706 0.3826 0.0219 -0.3119 0.3244 -0.2294 -0.3717 0.8932 0.4221 0.2505 -0.5186 'X-RAY DIFFRACTION' 4 ? refined 26.3652 21.9542 42.1302 0.1703 0.2034 0.1173 0.0339 -0.0048 -0.0510 4.6344 5.6372 3.9889 0.5238 0.1315 1.3804 -0.2537 -0.0511 0.2268 0.0350 0.1594 0.2579 -0.4456 -0.2613 -0.0611 'X-RAY DIFFRACTION' 5 ? refined 29.0651 23.2655 32.9713 0.3379 0.2575 0.1504 0.0011 -0.0409 -0.0317 3.5951 2.9439 4.8652 -0.3273 1.3514 -0.2665 0.1065 -0.2454 0.1735 0.4414 0.2439 0.1310 -0.4377 -0.4910 0.0036 'X-RAY DIFFRACTION' 6 ? refined 19.9213 17.4864 26.6760 0.4809 0.6702 0.5315 0.0784 -0.1600 -0.2489 5.4110 5.8556 1.1028 0.8784 0.6122 -2.3306 -0.0583 -0.3251 -0.3551 1.2656 -0.0605 0.7518 -1.1391 0.2367 -0.3769 'X-RAY DIFFRACTION' 7 ? refined 9.9584 26.2032 43.0829 0.3118 0.5573 0.5149 0.0769 0.0022 -0.1306 2.1134 4.7664 7.4006 -2.9202 -3.9294 5.1665 0.2426 -0.2988 -0.0177 0.8614 -0.3767 0.5915 0.0290 0.0603 -0.0241 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 'CHAIN A AND (RESID 102:132 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 'CHAIN A AND (RESID 133:154 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 'CHAIN A AND (RESID 155:174 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 'CHAIN A AND (RESID 175:192 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 'CHAIN A AND (RESID 193:212 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 'CHAIN A AND (RESID 213:227 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 'CHAIN A AND (RESID 228:245 )' ? ? ? ? ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 4K6E _atom_sites.fract_transf_matrix[1][1] 0.011757 _atom_sites.fract_transf_matrix[1][2] 0.006788 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013576 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020513 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S # loop_