HEADER VIRAL PROTEIN 16-APR-13 4K6U TITLE CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT SIALIC TITLE 2 ACID INHIBITOR ME0386 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: FIBER KNOB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 37; SOURCE 3 ORGANISM_TAXID: 52275; SOURCE 4 GENE: L5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS ADENOVIRUS, FIBER KNOB, PROTEIN CARBOHYDRATE INTERACTION, KEYWDS 2 CARBOHYDRATE MIMIC, MULTIVALENT LIGAND, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,J.BAUER REVDAT 7 03-APR-24 4K6U 1 REMARK REVDAT 6 28-FEB-24 4K6U 1 HETSYN REVDAT 5 29-JUL-20 4K6U 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 15-NOV-17 4K6U 1 REMARK REVDAT 3 09-SEP-15 4K6U 1 JRNL REVDAT 2 29-JUL-15 4K6U 1 JRNL REVDAT 1 22-OCT-14 4K6U 0 JRNL AUTH R.CARABALLO,M.SALEEB,J.BAUER,A.M.LIACI,N.CHANDRA,R.J.STORM, JRNL AUTH 2 L.FRANGSMYR,W.QIAN,T.STEHLE,N.ARNBERG,M.ELOFSSON JRNL TITL TRIAZOLE LINKER-BASED TRIVALENT SIALIC ACID INHIBITORS OF JRNL TITL 2 ADENOVIRUS TYPE 37 INFECTION OF HUMAN CORNEAL EPITHELIAL JRNL TITL 3 CELLS. JRNL REF ORG.BIOMOL.CHEM. V. 13 9194 2015 JRNL REFN ISSN 1477-0520 JRNL PMID 26177934 JRNL DOI 10.1039/C5OB01025J REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 48240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4618 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4301 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6298 ; 1.426 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9955 ; 0.869 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.627 ;25.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;12.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5189 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1042 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0119 -4.2177 4.0177 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.0749 REMARK 3 T33: 0.3307 T12: 0.0515 REMARK 3 T13: 0.1614 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.7687 L22: 2.8958 REMARK 3 L33: 1.7477 L12: 1.1575 REMARK 3 L13: -0.4715 L23: -0.9784 REMARK 3 S TENSOR REMARK 3 S11: -0.2591 S12: 0.1782 S13: -0.2257 REMARK 3 S21: -0.3842 S22: -0.0140 S23: -0.3883 REMARK 3 S31: 0.4547 S32: 0.1898 S33: 0.2731 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 179 B 365 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1224 10.6167 26.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.1849 REMARK 3 T33: 0.3677 T12: -0.0990 REMARK 3 T13: -0.0370 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 2.2097 L22: 1.2955 REMARK 3 L33: 2.4045 L12: -0.1901 REMARK 3 L13: -0.9336 L23: 0.2871 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.3899 S13: 0.1231 REMARK 3 S21: 0.2682 S22: -0.1925 S23: -0.2342 REMARK 3 S31: -0.1687 S32: 0.5127 S33: 0.0925 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 183 C 365 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5660 -5.5938 23.7611 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0126 REMARK 3 T33: 0.2851 T12: -0.0012 REMARK 3 T13: 0.0584 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.4570 L22: 1.4162 REMARK 3 L33: 2.5742 L12: 0.5018 REMARK 3 L13: 0.3510 L23: -0.4498 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.1348 S13: -0.0585 REMARK 3 S21: 0.0373 S22: -0.0532 S23: -0.0167 REMARK 3 S31: 0.2475 S32: -0.0345 S33: 0.0366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNLIGANDED AD37 TRIMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8000, 0.1M HEPES, 0.05M ZINC REMARK 280 ACETATE, PH 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.95500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 TRP A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 TYR A 181 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 TRP B 177 REMARK 465 ASN B 178 REMARK 465 GLY C 172 REMARK 465 ALA C 173 REMARK 465 MET C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 TRP C 177 REMARK 465 ASN C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 TYR C 181 REMARK 465 ASP C 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 LYS B 180 CD CE NZ REMARK 470 TYR B 181 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 240 CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ARG B 270 CZ NH1 NH2 REMARK 470 LYS C 282 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 SIA B 402 OAC 1P4 B 403 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 189 161.53 73.80 REMARK 500 ILE A 198 -60.62 -99.26 REMARK 500 CYS A 213 73.90 -109.19 REMARK 500 CYS A 213 75.44 -110.13 REMARK 500 SER A 274 -148.91 -126.83 REMARK 500 ALA A 283 43.63 -147.01 REMARK 500 THR B 189 160.90 72.75 REMARK 500 ASN B 195 11.67 -141.11 REMARK 500 CYS B 213 76.84 -106.09 REMARK 500 CYS B 213 76.27 -105.64 REMARK 500 ASN B 251 -167.94 -77.70 REMARK 500 SER B 274 -153.35 -115.96 REMARK 500 ALA B 283 38.08 -151.90 REMARK 500 THR C 189 148.94 67.71 REMARK 500 THR C 189 150.51 65.13 REMARK 500 ILE C 198 -63.24 -96.41 REMARK 500 CYS C 213 68.50 -106.55 REMARK 500 CYS C 213 67.94 -106.33 REMARK 500 SER C 274 -163.32 -124.46 REMARK 500 ALA C 283 48.02 -147.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 GLU A 351 OE2 132.9 REMARK 620 3 HOH A 598 O 119.4 106.4 REMARK 620 4 HOH A 604 O 104.4 82.5 67.5 REMARK 620 5 HOH A 605 O 84.0 91.7 108.8 171.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 GLU B 351 OE2 97.5 REMARK 620 3 HOH B 622 O 101.4 87.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 231 NE2 REMARK 620 2 ACT C 403 OXT 84.8 REMARK 620 3 ACT C 403 O 119.5 64.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6T RELATED DB: PDB REMARK 900 RELATED ID: 4K6V RELATED DB: PDB REMARK 900 RELATED ID: 4K6W RELATED DB: PDB REMARK 900 RELATED ID: 3N0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH BIVALENT REMARK 900 GLYCAN RECEPTOR REMARK 900 RELATED ID: 3QND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1UXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED AD37 FIBER KNOB DBREF 4K6U A 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4K6U B 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4K6U C 177 365 UNP Q64823 Q64823_9ADEN 177 365 SEQADV 4K6U GLY A 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6U ALA A 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6U MET A 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6U GLY A 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6U SER A 176 UNP Q64823 EXPRESSION TAG SEQADV 4K6U GLY B 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6U ALA B 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6U MET B 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6U GLY B 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6U SER B 176 UNP Q64823 EXPRESSION TAG SEQADV 4K6U GLY C 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6U ALA C 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6U MET C 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6U GLY C 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6U SER C 176 UNP Q64823 EXPRESSION TAG SEQRES 1 A 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 A 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 A 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 A 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 A 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 A 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 A 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 A 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 A 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 A 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 A 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 A 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 A 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 A 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 A 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 B 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 B 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 B 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 B 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 B 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 B 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 B 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 B 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 B 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 B 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 B 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 B 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 B 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 B 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 C 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 C 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 C 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 C 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 C 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 C 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 C 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 C 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 C 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 C 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 C 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 C 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 C 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 C 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU HET ZN A 401 1 HET SIA A 402 20 HET ZN B 401 1 HET SIA B 402 20 HET 1P4 B 403 31 HET ZN C 401 1 HET SIA C 402 20 HET ACT C 403 4 HETNAM ZN ZINC ION HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM 1P4 3,3',3''-[NITRILOTRIS(METHANEDIYL-1H-1,2,3-TRIAZOLE-4, HETNAM 2 1P4 1-DIYL)]TRIPROPAN-1-OL HETNAM ACT ACETATE ION HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 4 ZN 3(ZN 2+) FORMUL 5 SIA 3(C11 H19 N O9) FORMUL 8 1P4 C18 H30 N10 O3 FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *445(H2 O) HELIX 1 1 ALA A 283 MET A 287 5 5 HELIX 2 2 TYR A 302 ARG A 304 5 3 HELIX 3 3 GLY A 314 LYS A 316 5 3 HELIX 4 4 ALA B 283 MET B 287 5 5 HELIX 5 5 TYR B 302 ARG B 304 5 3 HELIX 6 6 GLY B 314 LYS B 316 5 3 HELIX 7 7 GLY C 263 TRP C 267 5 5 HELIX 8 8 ALA C 283 MET C 287 5 5 HELIX 9 9 TYR C 302 ARG C 304 5 3 HELIX 10 10 GLY C 314 LYS C 316 5 3 SHEET 1 A 6 SER A 274 ASN A 275 0 SHEET 2 A 6 ASN A 268 SER A 271 -1 N SER A 271 O SER A 274 SHEET 3 A 6 THR A 185 TRP A 187 -1 N THR A 185 O ARG A 270 SHEET 4 A 6 SER A 204 CYS A 213 -1 O LEU A 210 N LEU A 186 SHEET 5 A 6 GLN A 216 VAL A 225 -1 O ILE A 224 N LYS A 205 SHEET 6 A 6 PHE A 357 ILE A 362 -1 O PHE A 359 N ALA A 219 SHEET 1 B 2 ILE A 232 ILE A 233 0 SHEET 2 B 2 VAL A 350 GLU A 351 -1 O VAL A 350 N ILE A 233 SHEET 1 C 4 SER A 243 PHE A 250 0 SHEET 2 C 4 TYR A 335 SER A 342 -1 O PHE A 339 N ILE A 246 SHEET 3 C 4 PRO A 320 PHE A 327 -1 N LYS A 324 O ASN A 340 SHEET 4 C 4 ILE A 306 TYR A 312 -1 N VAL A 307 O THR A 325 SHEET 1 D 6 SER B 274 ASN B 275 0 SHEET 2 D 6 ASN B 268 SER B 271 -1 N SER B 271 O SER B 274 SHEET 3 D 6 ASP B 182 TRP B 187 -1 N ASP B 182 O ARG B 270 SHEET 4 D 6 SER B 204 CYS B 213 -1 O LEU B 210 N LEU B 186 SHEET 5 D 6 GLN B 216 VAL B 225 -1 O ILE B 224 N LYS B 205 SHEET 6 D 6 PHE B 357 ILE B 362 -1 O TYR B 361 N ILE B 217 SHEET 1 E 2 ILE B 232 ASN B 234 0 SHEET 2 E 2 GLU B 348 GLU B 351 -1 O VAL B 350 N ILE B 233 SHEET 1 F 4 SER B 243 PHE B 250 0 SHEET 2 F 4 TYR B 335 SER B 342 -1 O PHE B 339 N ILE B 246 SHEET 3 F 4 PRO B 320 PHE B 327 -1 N VAL B 322 O SER B 342 SHEET 4 F 4 ILE B 306 TYR B 312 -1 N VAL B 307 O THR B 325 SHEET 1 G 6 SER C 274 ASN C 275 0 SHEET 2 G 6 ASN C 268 SER C 271 -1 N SER C 271 O SER C 274 SHEET 3 G 6 THR C 185 TRP C 187 -1 N TRP C 187 O ASN C 268 SHEET 4 G 6 SER C 204 CYS C 213 -1 O LEU C 210 N LEU C 186 SHEET 5 G 6 GLN C 216 VAL C 225 -1 O ILE C 224 N LYS C 205 SHEET 6 G 6 PHE C 357 ILE C 362 -1 O PHE C 359 N ALA C 219 SHEET 1 H 2 ILE C 232 ASN C 234 0 SHEET 2 H 2 GLU C 348 GLU C 351 -1 O VAL C 350 N ILE C 233 SHEET 1 I 4 SER C 243 PHE C 250 0 SHEET 2 I 4 TYR C 335 SER C 342 -1 O TYR C 335 N PHE C 250 SHEET 3 I 4 PRO C 320 PHE C 327 -1 N LYS C 324 O ASN C 340 SHEET 4 I 4 ILE C 306 TYR C 312 -1 N ILE C 311 O ALA C 321 LINK C2 SIA A 402 OAB 1P4 B 403 1555 1555 1.44 LINK C2 SIA B 402 OAC 1P4 B 403 1555 1555 1.40 LINK OAA 1P4 B 403 C2 SIA C 402 1555 1555 1.43 LINK NE2 HIS A 231 ZN ZN A 401 1555 1555 1.89 LINK OE2 GLU A 351 ZN ZN A 401 1555 1555 1.84 LINK ZN ZN A 401 O HOH A 598 1555 1555 2.51 LINK ZN ZN A 401 O HOH A 604 1555 1555 2.42 LINK ZN ZN A 401 O HOH A 605 1555 1555 2.33 LINK NE2 HIS B 231 ZN ZN B 401 1555 1555 2.12 LINK OE2 GLU B 351 ZN ZN B 401 1555 1555 1.88 LINK ZN ZN B 401 O HOH B 622 1555 1555 2.45 LINK NE2 HIS C 231 ZN ZN C 401 1555 1555 2.07 LINK ZN ZN C 401 OXT ACT C 403 1555 1555 1.91 LINK ZN ZN C 401 O ACT C 403 1555 1555 2.18 CRYST1 60.860 69.910 74.070 90.00 94.62 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016431 0.000000 0.001329 0.00000 SCALE2 0.000000 0.014304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013545 0.00000