HEADER VIRAL PROTEIN 16-APR-13 4K6V TITLE CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT SIALIC TITLE 2 ACID INHIBITOR ME0407 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: FIBER KNOB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 37; SOURCE 3 ORGANISM_TAXID: 52275; SOURCE 4 GENE: L5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS ADENOVIRUS, FIBER KNOB, PROTEIN CARBOHYDRATE INTERACTION, KEYWDS 2 CARBOHYDRATE MIMIC, MULTIVALENT LIGAND, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,J.BAUER REVDAT 7 03-APR-24 4K6V 1 REMARK REVDAT 6 29-NOV-23 4K6V 1 REMARK HETSYN REVDAT 5 29-JUL-20 4K6V 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 15-NOV-17 4K6V 1 REMARK REVDAT 3 09-SEP-15 4K6V 1 JRNL REVDAT 2 29-JUL-15 4K6V 1 JRNL REVDAT 1 22-OCT-14 4K6V 0 JRNL AUTH R.CARABALLO,M.SALEEB,J.BAUER,A.M.LIACI,N.CHANDRA,R.J.STORM, JRNL AUTH 2 L.FRANGSMYR,W.QIAN,T.STEHLE,N.ARNBERG,M.ELOFSSON JRNL TITL TRIAZOLE LINKER-BASED TRIVALENT SIALIC ACID INHIBITORS OF JRNL TITL 2 ADENOVIRUS TYPE 37 INFECTION OF HUMAN CORNEAL EPITHELIAL JRNL TITL 3 CELLS. JRNL REF ORG.BIOMOL.CHEM. V. 13 9194 2015 JRNL REFN ISSN 1477-0520 JRNL PMID 26177934 JRNL DOI 10.1039/C5OB01025J REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 99466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 621 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4631 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4277 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.409 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9898 ; 3.425 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 6.700 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.265 ;25.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;11.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5242 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1050 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8908 ; 2.673 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 172 ;25.645 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9241 ; 7.385 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8098 -4.0768 -33.1732 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.0615 REMARK 3 T33: 0.0989 T12: 0.0558 REMARK 3 T13: 0.0917 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.1986 L22: 2.0325 REMARK 3 L33: 1.0478 L12: 0.9455 REMARK 3 L13: -0.3237 L23: -0.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.1660 S12: 0.0931 S13: -0.2287 REMARK 3 S21: -0.3217 S22: -0.0431 S23: -0.3774 REMARK 3 S31: 0.2974 S32: 0.1318 S33: 0.2091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 181 B 365 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5089 10.7069 -10.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.1592 REMARK 3 T33: 0.0758 T12: -0.0394 REMARK 3 T13: -0.0543 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.6931 L22: 1.1824 REMARK 3 L33: 1.9238 L12: -0.2278 REMARK 3 L13: -1.0524 L23: 0.2022 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.2901 S13: 0.0714 REMARK 3 S21: 0.1958 S22: -0.1249 S23: -0.2550 REMARK 3 S31: -0.1034 S32: 0.4164 S33: 0.0514 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 183 C 365 REMARK 3 ORIGIN FOR THE GROUP (A): -29.2111 -5.4985 -13.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0238 REMARK 3 T33: 0.0076 T12: 0.0096 REMARK 3 T13: 0.0053 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1435 L22: 1.0304 REMARK 3 L33: 1.9173 L12: 0.3997 REMARK 3 L13: 0.1539 L23: -0.2151 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0895 S13: -0.0709 REMARK 3 S21: 0.0720 S22: -0.0311 S23: 0.0148 REMARK 3 S31: 0.1665 S32: -0.0108 S33: 0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNLIGANDED AD37 TRIMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000, 0.1M HEPES, 0.05M ZINC REMARK 280 ACETATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.84000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 TRP A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 TYR A 181 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 TRP B 177 REMARK 465 ASN B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 GLY C 172 REMARK 465 ALA C 173 REMARK 465 MET C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 TRP C 177 REMARK 465 ASN C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 TYR C 181 REMARK 465 ASP C 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CE NZ REMARK 470 ASP A 258 CG OD1 OD2 REMARK 470 LYS A 282 NZ REMARK 470 TYR B 181 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 183 OG1 CG2 REMARK 470 ARG B 184 NE CZ NH1 NH2 REMARK 470 LYS B 202 CD CE NZ REMARK 470 SER B 215 OG REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ASN B 298 OD1 ND2 REMARK 470 THR C 183 OG1 CG2 REMARK 470 LYS C 202 CE NZ REMARK 470 LYS C 236 CG CD CE NZ REMARK 470 LYS C 282 CE NZ REMARK 470 LYS C 316 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 189 156.09 68.88 REMARK 500 ILE A 198 -61.35 -92.92 REMARK 500 CYS A 213 78.38 -115.08 REMARK 500 SER A 274 -151.11 -127.96 REMARK 500 ALA A 283 41.59 -152.87 REMARK 500 THR B 189 157.59 66.96 REMARK 500 ILE B 198 -60.68 -92.61 REMARK 500 CYS B 213 72.71 -108.90 REMARK 500 CYS B 213 76.52 -111.09 REMARK 500 SER B 274 -152.68 -122.78 REMARK 500 ALA B 283 39.13 -146.22 REMARK 500 THR C 189 135.43 -14.25 REMARK 500 THR C 189 139.63 41.57 REMARK 500 PRO C 190 37.26 -93.98 REMARK 500 ILE C 198 -63.95 -93.37 REMARK 500 CYS C 213 73.78 -113.22 REMARK 500 CYS C 213 76.56 -114.74 REMARK 500 SER C 274 -160.87 -124.20 REMARK 500 SER C 274 -158.65 -126.58 REMARK 500 ALA C 283 42.01 -152.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 GLU A 351 OE2 127.7 REMARK 620 3 HOH A 690 O 97.7 86.2 REMARK 620 4 HOH A 691 O 95.7 82.3 166.0 REMARK 620 5 ACT B 403 O 112.8 119.3 90.4 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 GLU B 351 OE2 99.3 REMARK 620 3 HOH B 574 O 87.6 173.0 REMARK 620 4 HOH B 680 O 106.9 90.9 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 231 NE2 REMARK 620 2 ACT C 404 OXT 87.6 REMARK 620 3 ACT C 404 O 114.5 66.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6T RELATED DB: PDB REMARK 900 RELATED ID: 4K6U RELATED DB: PDB REMARK 900 RELATED ID: 4K6W RELATED DB: PDB REMARK 900 RELATED ID: 3N0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH BIVALENT REMARK 900 GLYCAN RECEPTOR REMARK 900 RELATED ID: 3QND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1UXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED AD37 FIBER KNOB DBREF 4K6V A 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4K6V B 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4K6V C 177 365 UNP Q64823 Q64823_9ADEN 177 365 SEQADV 4K6V GLY A 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6V ALA A 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6V MET A 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6V GLY A 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6V SER A 176 UNP Q64823 EXPRESSION TAG SEQADV 4K6V GLY B 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6V ALA B 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6V MET B 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6V GLY B 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6V SER B 176 UNP Q64823 EXPRESSION TAG SEQADV 4K6V GLY C 172 UNP Q64823 EXPRESSION TAG SEQADV 4K6V ALA C 173 UNP Q64823 EXPRESSION TAG SEQADV 4K6V MET C 174 UNP Q64823 EXPRESSION TAG SEQADV 4K6V GLY C 175 UNP Q64823 EXPRESSION TAG SEQADV 4K6V SER C 176 UNP Q64823 EXPRESSION TAG SEQRES 1 A 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 A 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 A 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 A 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 A 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 A 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 A 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 A 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 A 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 A 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 A 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 A 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 A 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 A 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 A 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 B 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 B 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 B 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 B 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 B 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 B 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 B 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 B 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 B 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 B 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 B 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 B 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 B 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 B 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 C 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 C 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 C 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 C 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 C 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 C 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 C 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 C 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 C 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 C 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 C 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 C 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 C 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 C 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU HET ZN A 401 1 HET 18D A 402 21 HET 1P4 A 403 31 HET ACT A 404 4 HET CL A 405 1 HET ZN B 401 1 HET 18D B 402 21 HET ACT B 403 4 HET CL B 404 1 HET ZN C 401 1 HET 18D C 402 21 HET ACT C 403 4 HET ACT C 404 4 HET CL C 405 1 HET NA C 406 1 HETNAM ZN ZINC ION HETNAM 18D 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO-ALPHA-D- HETNAM 2 18D GALACTO-NON-2-ULOPYRANOSONIC ACID HETNAM 1P4 3,3',3''-[NITRILOTRIS(METHANEDIYL-1H-1,2,3-TRIAZOLE-4, HETNAM 2 1P4 1-DIYL)]TRIPROPAN-1-OL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN 18D 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO-ALPHA-D- HETSYN 2 18D GALACTO-NON-2-ULOSONIC ACID; 3,5-DIDEOXY-5- HETSYN 3 18D (PROPANOYLAMINO)-D-GLYCERO-D-GALACTO-NON-2-ULOSONIC HETSYN 4 18D ACID; 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO- HETSYN 5 18D GALACTO-NON-2-ULOSONIC ACID FORMUL 4 ZN 3(ZN 2+) FORMUL 5 18D 3(C12 H21 N O9) FORMUL 6 1P4 C18 H30 N10 O3 FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 8 CL 3(CL 1-) FORMUL 18 NA NA 1+ FORMUL 19 HOH *621(H2 O) HELIX 1 1 ALA A 283 MET A 287 5 5 HELIX 2 2 TYR A 302 ARG A 304 5 3 HELIX 3 3 GLY A 314 LYS A 316 5 3 HELIX 4 4 ALA B 283 MET B 287 5 5 HELIX 5 5 TYR B 302 ARG B 304 5 3 HELIX 6 6 GLY B 314 LYS B 316 5 3 HELIX 7 7 GLY C 263 TRP C 267 5 5 HELIX 8 8 ALA C 283 MET C 287 5 5 HELIX 9 9 TYR C 302 ARG C 304 5 3 HELIX 10 10 GLY C 314 LYS C 316 5 3 SHEET 1 A 6 SER A 274 ASN A 275 0 SHEET 2 A 6 ASN A 268 SER A 271 -1 N SER A 271 O SER A 274 SHEET 3 A 6 THR A 185 TRP A 187 -1 N TRP A 187 O ASN A 268 SHEET 4 A 6 SER A 204 CYS A 213 -1 O LEU A 210 N LEU A 186 SHEET 5 A 6 GLN A 216 VAL A 225 -1 O ILE A 224 N LYS A 205 SHEET 6 A 6 PHE A 357 ILE A 362 -1 O PHE A 359 N ALA A 219 SHEET 1 B 2 ILE A 232 ASN A 234 0 SHEET 2 B 2 GLU A 348 GLU A 351 -1 O VAL A 350 N ILE A 233 SHEET 1 C 4 SER A 243 PHE A 250 0 SHEET 2 C 4 TYR A 335 SER A 342 -1 O PHE A 339 N ILE A 246 SHEET 3 C 4 PRO A 320 PHE A 327 -1 N LYS A 324 O ASN A 340 SHEET 4 C 4 ILE A 306 TYR A 312 -1 N VAL A 307 O THR A 325 SHEET 1 D 6 SER B 274 ASN B 275 0 SHEET 2 D 6 ASN B 268 SER B 271 -1 N SER B 271 O SER B 274 SHEET 3 D 6 ASP B 182 TRP B 187 -1 N ASP B 182 O ARG B 270 SHEET 4 D 6 SER B 204 CYS B 213 -1 O LEU B 210 N LEU B 186 SHEET 5 D 6 GLN B 216 VAL B 225 -1 O LEU B 218 N THR B 211 SHEET 6 D 6 PHE B 357 ILE B 362 -1 O PHE B 359 N ALA B 219 SHEET 1 E 2 ILE B 232 ASN B 234 0 SHEET 2 E 2 GLU B 348 GLU B 351 -1 O VAL B 350 N ILE B 233 SHEET 1 F 4 SER B 243 PHE B 250 0 SHEET 2 F 4 TYR B 335 SER B 342 -1 O PHE B 339 N ILE B 246 SHEET 3 F 4 PRO B 320 PHE B 327 -1 N LYS B 324 O ASN B 340 SHEET 4 F 4 ILE B 306 TYR B 312 -1 N VAL B 307 O THR B 325 SHEET 1 G 6 SER C 274 ASN C 275 0 SHEET 2 G 6 ASN C 268 SER C 271 -1 N SER C 271 O SER C 274 SHEET 3 G 6 THR C 185 TRP C 187 -1 N TRP C 187 O ASN C 268 SHEET 4 G 6 SER C 204 CYS C 213 -1 O LEU C 210 N LEU C 186 SHEET 5 G 6 GLN C 216 VAL C 225 -1 O ILE C 224 N LYS C 205 SHEET 6 G 6 PHE C 357 ILE C 362 -1 O PHE C 359 N ALA C 219 SHEET 1 H 2 ILE C 232 ASN C 234 0 SHEET 2 H 2 GLU C 348 GLU C 351 -1 O VAL C 350 N ILE C 233 SHEET 1 I 4 SER C 243 PHE C 250 0 SHEET 2 I 4 TYR C 335 SER C 342 -1 O TYR C 335 N PHE C 250 SHEET 3 I 4 PRO C 320 PHE C 327 -1 N LYS C 324 O ASN C 340 SHEET 4 I 4 ILE C 306 TYR C 312 -1 N ILE C 311 O ALA C 321 LINK C2 18D A 402 OAB 1P4 A 403 1555 1555 1.43 LINK OAC 1P4 A 403 C2 18D B 402 1555 1555 1.44 LINK OAA 1P4 A 403 C2 18D C 402 1555 1555 1.43 LINK NE2 HIS A 231 ZN ZN A 401 1555 1555 2.00 LINK OE2 GLU A 351 ZN ZN A 401 1555 1555 1.95 LINK ZN ZN A 401 O HOH A 690 1555 1555 2.15 LINK ZN ZN A 401 O HOH A 691 1555 1555 2.16 LINK ZN ZN A 401 O ACT B 403 1555 1555 1.99 LINK NE2 HIS B 231 ZN ZN B 401 1555 1555 2.09 LINK OE2 GLU B 351 ZN ZN B 401 1555 1555 1.80 LINK ZN ZN B 401 O HOH B 574 1555 1555 2.51 LINK ZN ZN B 401 O HOH B 680 1555 1555 2.15 LINK NE2 HIS C 231 ZN ZN C 401 1555 1555 2.14 LINK OD2 ASP C 318 NA NA C 406 1555 1555 2.18 LINK ZN ZN C 401 OXT ACT C 404 1555 1555 1.89 LINK ZN ZN C 401 O ACT C 404 1555 1555 2.12 CRYST1 61.320 69.680 74.780 90.00 94.43 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016308 0.000000 0.001264 0.00000 SCALE2 0.000000 0.014351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013413 0.00000