HEADER IMMUNE SYSTEM 16-APR-13 4K79 TITLE RECOGNITION OF THE THOMSEN-FRIEDENREICH ANTIGEN BY A LAMPREY VARIABLE TITLE 2 LYMPHOCYTE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIABLE LYMPHOCYTE RECEPTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROMYZON MARINUS; SOURCE 3 ORGANISM_COMMON: MARINE LAMPREY; SOURCE 4 ORGANISM_TAXID: 7757; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS LEUCINE RICH REPEAT, ANTIGEN RECEPTOR, THOMSEN-FRIEDENREICH ANTIGEN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.LUO,C.A.VELIKOVSKY,X.B.YANG,R.A.MARIUZZA REVDAT 5 20-SEP-23 4K79 1 HETSYN REVDAT 4 29-JUL-20 4K79 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 28-AUG-13 4K79 1 JRNL REVDAT 2 03-JUL-13 4K79 1 JRNL REVDAT 1 26-JUN-13 4K79 0 JRNL AUTH M.LUO,C.A.VELIKOVSKY,X.YANG,M.A.SIDDIQUI,X.HONG,J.J.BARCHI, JRNL AUTH 2 J.C.GILDERSLEEVE,Z.PANCER,R.A.MARIUZZA JRNL TITL RECOGNITION OF THE THOMSEN-FRIEDENREICH PANCARCINOMA JRNL TITL 2 CARBOHYDRATE ANTIGEN BY A LAMPREY VARIABLE LYMPHOCYTE JRNL TITL 3 RECEPTOR. JRNL REF J.BIOL.CHEM. V. 288 23597 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23782692 JRNL DOI 10.1074/JBC.M113.480467 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.406 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6925 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9476 ; 1.657 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 6.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;39.258 ;24.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1092 ;13.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1099 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5152 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4366 ; 1.098 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7060 ; 1.937 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2559 ; 2.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 4.563 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38816 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 33.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3E6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350, 4% (V/V) GLYCEROL, AND 0.1M TRIS-HCL (PH 7.0), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.34000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 220 REMARK 465 MET B 1 REMARK 465 GLY B 220 REMARK 465 MET C 1 REMARK 465 GLY C 220 REMARK 465 MET D 1 REMARK 465 GLY D 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 A2G E 1 O5 GAL E 2 2.18 REMARK 500 O3 A2G E 1 C2 GAL E 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 57 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 -157.51 -116.94 REMARK 500 LEU A 53 54.51 -97.99 REMARK 500 ASN A 64 -157.52 -111.04 REMARK 500 ASN A 88 -159.74 -111.11 REMARK 500 LEU A 101 55.17 -91.29 REMARK 500 MET A 112 -149.04 -123.65 REMARK 500 ASN A 136 -158.82 -123.55 REMARK 500 ARG A 148 35.41 -97.52 REMARK 500 LEU A 149 65.23 -119.76 REMARK 500 SER A 192 70.62 -161.15 REMARK 500 ASN A 202 19.93 57.37 REMARK 500 ASN B 40 -157.23 -119.69 REMARK 500 LEU B 53 54.64 -101.97 REMARK 500 ASN B 64 -161.50 -115.97 REMARK 500 ASN B 88 -169.60 -116.38 REMARK 500 MET B 112 -146.28 -129.93 REMARK 500 ASN B 136 -151.83 -124.98 REMARK 500 LEU B 149 61.75 -116.43 REMARK 500 HIS B 179 40.15 -107.59 REMARK 500 SER B 192 70.81 -156.31 REMARK 500 ASN B 202 19.33 59.68 REMARK 500 CYS C 3 130.22 -171.69 REMARK 500 ASN C 40 -156.16 -119.48 REMARK 500 LEU C 53 49.24 -103.87 REMARK 500 ASN C 64 -160.94 -115.80 REMARK 500 ASN C 88 -159.49 -109.17 REMARK 500 LEU C 101 57.17 -90.63 REMARK 500 MET C 112 -152.58 -136.85 REMARK 500 ASN C 136 -160.23 -127.63 REMARK 500 SER C 192 69.88 -159.97 REMARK 500 ASN C 202 27.03 44.98 REMARK 500 ASN D 40 -157.08 -117.20 REMARK 500 LEU D 53 53.88 -117.26 REMARK 500 ASN D 64 -165.38 -118.73 REMARK 500 LEU D 77 59.59 -93.10 REMARK 500 MET D 112 -143.61 -128.05 REMARK 500 ASN D 136 -158.82 -122.62 REMARK 500 ARG D 148 38.25 -99.92 REMARK 500 SER D 192 66.68 -158.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K5U RELATED DB: PDB DBREF 4K79 A 2 220 UNP K0IE77 K0IE77_PETMA 1 219 DBREF 4K79 B 2 220 UNP K0IE77 K0IE77_PETMA 1 219 DBREF 4K79 C 2 220 UNP K0IE77 K0IE77_PETMA 1 219 DBREF 4K79 D 2 220 UNP K0IE77 K0IE77_PETMA 1 219 SEQADV 4K79 MET A 1 UNP K0IE77 INITIATING METHIONINE SEQADV 4K79 MET B 1 UNP K0IE77 INITIATING METHIONINE SEQADV 4K79 MET C 1 UNP K0IE77 INITIATING METHIONINE SEQADV 4K79 MET D 1 UNP K0IE77 INITIATING METHIONINE SEQRES 1 A 220 MET ALA CYS PRO SER GLN CYS SER CYS SER GLY THR GLU SEQRES 2 A 220 VAL ASN CYS ALA GLY LYS SER LEU ALA SER VAL PRO ALA SEQRES 3 A 220 GLY ILE PRO THR THR THR ARG VAL LEU TYR LEU ASN SER SEQRES 4 A 220 ASN GLN ILE THR LYS LEU GLU PRO GLY VAL PHE ASP ARG SEQRES 5 A 220 LEU ALA ASN LEU ARG GLU LEU HIS LEU TRP GLY ASN GLN SEQRES 6 A 220 LEU VAL SER LEU PRO PRO GLY VAL PHE ASP ASN LEU ALA SEQRES 7 A 220 ASN LEU GLU LYS LEU TRP LEU ASN SER ASN GLN LEU THR SEQRES 8 A 220 SER LEU PRO ALA GLY LEU PHE ASP ARG LEU VAL ASN LEU SEQRES 9 A 220 GLU HIS LEU GLY LEU CYS CYS MET LYS LEU THR GLU LEU SEQRES 10 A 220 PRO SER GLY ALA PHE ASP LYS LEU THR ARG LEU LYS GLN SEQRES 11 A 220 LEU GLY LEU ASP GLN ASN GLN LEU LYS SER ILE PRO ASP SEQRES 12 A 220 GLY ALA PHE ALA ARG LEU PRO SER LEU THR HIS VAL TRP SEQRES 13 A 220 LEU HIS THR ASN PRO TRP ASP CYS GLN CYS THR ASP ILE SEQRES 14 A 220 LEU TYR LEU SER GLY TRP VAL ALA GLN HIS SER SER ILE SEQRES 15 A 220 VAL GLY GLU GLY TRP PRO TRP ARG HIS SER PRO ASP SER SEQRES 16 A 220 ALA LYS CYS SER GLY THR ASN THR PRO VAL ARG ALA VAL SEQRES 17 A 220 THR GLU ALA SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 B 220 MET ALA CYS PRO SER GLN CYS SER CYS SER GLY THR GLU SEQRES 2 B 220 VAL ASN CYS ALA GLY LYS SER LEU ALA SER VAL PRO ALA SEQRES 3 B 220 GLY ILE PRO THR THR THR ARG VAL LEU TYR LEU ASN SER SEQRES 4 B 220 ASN GLN ILE THR LYS LEU GLU PRO GLY VAL PHE ASP ARG SEQRES 5 B 220 LEU ALA ASN LEU ARG GLU LEU HIS LEU TRP GLY ASN GLN SEQRES 6 B 220 LEU VAL SER LEU PRO PRO GLY VAL PHE ASP ASN LEU ALA SEQRES 7 B 220 ASN LEU GLU LYS LEU TRP LEU ASN SER ASN GLN LEU THR SEQRES 8 B 220 SER LEU PRO ALA GLY LEU PHE ASP ARG LEU VAL ASN LEU SEQRES 9 B 220 GLU HIS LEU GLY LEU CYS CYS MET LYS LEU THR GLU LEU SEQRES 10 B 220 PRO SER GLY ALA PHE ASP LYS LEU THR ARG LEU LYS GLN SEQRES 11 B 220 LEU GLY LEU ASP GLN ASN GLN LEU LYS SER ILE PRO ASP SEQRES 12 B 220 GLY ALA PHE ALA ARG LEU PRO SER LEU THR HIS VAL TRP SEQRES 13 B 220 LEU HIS THR ASN PRO TRP ASP CYS GLN CYS THR ASP ILE SEQRES 14 B 220 LEU TYR LEU SER GLY TRP VAL ALA GLN HIS SER SER ILE SEQRES 15 B 220 VAL GLY GLU GLY TRP PRO TRP ARG HIS SER PRO ASP SER SEQRES 16 B 220 ALA LYS CYS SER GLY THR ASN THR PRO VAL ARG ALA VAL SEQRES 17 B 220 THR GLU ALA SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 C 220 MET ALA CYS PRO SER GLN CYS SER CYS SER GLY THR GLU SEQRES 2 C 220 VAL ASN CYS ALA GLY LYS SER LEU ALA SER VAL PRO ALA SEQRES 3 C 220 GLY ILE PRO THR THR THR ARG VAL LEU TYR LEU ASN SER SEQRES 4 C 220 ASN GLN ILE THR LYS LEU GLU PRO GLY VAL PHE ASP ARG SEQRES 5 C 220 LEU ALA ASN LEU ARG GLU LEU HIS LEU TRP GLY ASN GLN SEQRES 6 C 220 LEU VAL SER LEU PRO PRO GLY VAL PHE ASP ASN LEU ALA SEQRES 7 C 220 ASN LEU GLU LYS LEU TRP LEU ASN SER ASN GLN LEU THR SEQRES 8 C 220 SER LEU PRO ALA GLY LEU PHE ASP ARG LEU VAL ASN LEU SEQRES 9 C 220 GLU HIS LEU GLY LEU CYS CYS MET LYS LEU THR GLU LEU SEQRES 10 C 220 PRO SER GLY ALA PHE ASP LYS LEU THR ARG LEU LYS GLN SEQRES 11 C 220 LEU GLY LEU ASP GLN ASN GLN LEU LYS SER ILE PRO ASP SEQRES 12 C 220 GLY ALA PHE ALA ARG LEU PRO SER LEU THR HIS VAL TRP SEQRES 13 C 220 LEU HIS THR ASN PRO TRP ASP CYS GLN CYS THR ASP ILE SEQRES 14 C 220 LEU TYR LEU SER GLY TRP VAL ALA GLN HIS SER SER ILE SEQRES 15 C 220 VAL GLY GLU GLY TRP PRO TRP ARG HIS SER PRO ASP SER SEQRES 16 C 220 ALA LYS CYS SER GLY THR ASN THR PRO VAL ARG ALA VAL SEQRES 17 C 220 THR GLU ALA SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 D 220 MET ALA CYS PRO SER GLN CYS SER CYS SER GLY THR GLU SEQRES 2 D 220 VAL ASN CYS ALA GLY LYS SER LEU ALA SER VAL PRO ALA SEQRES 3 D 220 GLY ILE PRO THR THR THR ARG VAL LEU TYR LEU ASN SER SEQRES 4 D 220 ASN GLN ILE THR LYS LEU GLU PRO GLY VAL PHE ASP ARG SEQRES 5 D 220 LEU ALA ASN LEU ARG GLU LEU HIS LEU TRP GLY ASN GLN SEQRES 6 D 220 LEU VAL SER LEU PRO PRO GLY VAL PHE ASP ASN LEU ALA SEQRES 7 D 220 ASN LEU GLU LYS LEU TRP LEU ASN SER ASN GLN LEU THR SEQRES 8 D 220 SER LEU PRO ALA GLY LEU PHE ASP ARG LEU VAL ASN LEU SEQRES 9 D 220 GLU HIS LEU GLY LEU CYS CYS MET LYS LEU THR GLU LEU SEQRES 10 D 220 PRO SER GLY ALA PHE ASP LYS LEU THR ARG LEU LYS GLN SEQRES 11 D 220 LEU GLY LEU ASP GLN ASN GLN LEU LYS SER ILE PRO ASP SEQRES 12 D 220 GLY ALA PHE ALA ARG LEU PRO SER LEU THR HIS VAL TRP SEQRES 13 D 220 LEU HIS THR ASN PRO TRP ASP CYS GLN CYS THR ASP ILE SEQRES 14 D 220 LEU TYR LEU SER GLY TRP VAL ALA GLN HIS SER SER ILE SEQRES 15 D 220 VAL GLY GLU GLY TRP PRO TRP ARG HIS SER PRO ASP SER SEQRES 16 D 220 ALA LYS CYS SER GLY THR ASN THR PRO VAL ARG ALA VAL SEQRES 17 D 220 THR GLU ALA SER THR SER PRO SER LYS CYS PRO GLY HET A2G E 1 15 HET GAL E 2 11 HET A2G F 1 15 HET GAL F 2 11 HET A2G G 1 15 HET GAL G 2 11 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 5 A2G 3(C8 H15 N O6) FORMUL 5 GAL 3(C6 H12 O6) FORMUL 8 HOH *278(H2 O) HELIX 1 1 CYS A 166 ASP A 168 5 3 HELIX 2 2 ILE A 169 HIS A 179 1 11 HELIX 3 3 SER A 180 ILE A 182 5 3 HELIX 4 4 PRO A 204 VAL A 208 5 5 HELIX 5 5 SER A 214 CYS A 218 5 5 HELIX 6 6 ASP B 168 HIS B 179 1 12 HELIX 7 7 PRO B 204 VAL B 208 5 5 HELIX 8 8 THR B 209 THR B 213 5 5 HELIX 9 9 SER B 214 CYS B 218 5 5 HELIX 10 10 CYS C 166 ASP C 168 5 3 HELIX 11 11 ILE C 169 HIS C 179 1 11 HELIX 12 12 PRO C 204 VAL C 208 5 5 HELIX 13 13 SER C 214 CYS C 218 5 5 HELIX 14 14 CYS D 166 ASP D 168 5 3 HELIX 15 15 ILE D 169 HIS D 179 1 11 HELIX 16 16 PRO D 204 VAL D 208 5 5 HELIX 17 17 THR D 209 THR D 213 5 5 HELIX 18 18 SER D 214 CYS D 218 5 5 SHEET 1 A 8 SER A 8 SER A 10 0 SHEET 2 A 8 GLU A 13 ASN A 15 -1 O ASN A 15 N SER A 8 SHEET 3 A 8 VAL A 34 TYR A 36 1 O VAL A 34 N VAL A 14 SHEET 4 A 8 GLU A 58 HIS A 60 1 O HIS A 60 N LEU A 35 SHEET 5 A 8 LYS A 82 TRP A 84 1 O TRP A 84 N LEU A 59 SHEET 6 A 8 HIS A 106 GLY A 108 1 O GLY A 108 N LEU A 83 SHEET 7 A 8 GLN A 130 GLY A 132 1 O GLN A 130 N LEU A 107 SHEET 8 A 8 HIS A 154 TRP A 156 1 O HIS A 154 N LEU A 131 SHEET 1 B 2 GLY A 184 GLU A 185 0 SHEET 2 B 2 ARG A 190 HIS A 191 -1 O ARG A 190 N GLU A 185 SHEET 1 C10 SER B 8 SER B 10 0 SHEET 2 C10 GLU B 13 ASN B 15 -1 O ASN B 15 N SER B 8 SHEET 3 C10 VAL B 34 TYR B 36 1 O TYR B 36 N VAL B 14 SHEET 4 C10 GLU B 58 HIS B 60 1 O HIS B 60 N LEU B 35 SHEET 5 C10 LYS B 82 TRP B 84 1 O LYS B 82 N LEU B 59 SHEET 6 C10 HIS B 106 GLY B 108 1 O GLY B 108 N LEU B 83 SHEET 7 C10 GLN B 130 GLY B 132 1 O GLN B 130 N LEU B 107 SHEET 8 C10 HIS B 154 TRP B 156 1 O HIS B 154 N LEU B 131 SHEET 9 C10 VAL B 183 GLU B 185 1 O GLY B 184 N VAL B 155 SHEET 10 C10 ARG B 190 HIS B 191 -1 O ARG B 190 N GLU B 185 SHEET 1 D10 SER C 8 SER C 10 0 SHEET 2 D10 GLU C 13 ASN C 15 -1 O ASN C 15 N SER C 8 SHEET 3 D10 VAL C 34 TYR C 36 1 O TYR C 36 N VAL C 14 SHEET 4 D10 GLU C 58 HIS C 60 1 O HIS C 60 N LEU C 35 SHEET 5 D10 LYS C 82 TRP C 84 1 O LYS C 82 N LEU C 59 SHEET 6 D10 HIS C 106 GLY C 108 1 O GLY C 108 N LEU C 83 SHEET 7 D10 GLN C 130 GLY C 132 1 O GLN C 130 N LEU C 107 SHEET 8 D10 HIS C 154 TRP C 156 1 O HIS C 154 N LEU C 131 SHEET 9 D10 VAL C 183 GLU C 185 1 O GLY C 184 N VAL C 155 SHEET 10 D10 ARG C 190 HIS C 191 -1 O ARG C 190 N GLU C 185 SHEET 1 E10 SER D 8 SER D 10 0 SHEET 2 E10 GLU D 13 ASN D 15 -1 O ASN D 15 N SER D 8 SHEET 3 E10 VAL D 34 TYR D 36 1 O TYR D 36 N VAL D 14 SHEET 4 E10 GLU D 58 HIS D 60 1 O HIS D 60 N LEU D 35 SHEET 5 E10 LYS D 82 TRP D 84 1 O LYS D 82 N LEU D 59 SHEET 6 E10 HIS D 106 GLY D 108 1 O GLY D 108 N LEU D 83 SHEET 7 E10 GLN D 130 GLY D 132 1 O GLY D 132 N LEU D 107 SHEET 8 E10 HIS D 154 TRP D 156 1 O HIS D 154 N LEU D 131 SHEET 9 E10 VAL D 183 GLU D 185 1 O GLY D 184 N VAL D 155 SHEET 10 E10 ARG D 190 HIS D 191 -1 O ARG D 190 N GLU D 185 SSBOND 1 CYS A 3 CYS A 9 1555 1555 2.06 SSBOND 2 CYS A 7 CYS A 16 1555 1555 2.07 SSBOND 3 CYS A 110 CYS A 111 1555 1555 2.19 SSBOND 4 CYS A 164 CYS A 198 1555 1555 2.04 SSBOND 5 CYS A 166 CYS A 218 1555 1555 2.05 SSBOND 6 CYS B 3 CYS B 9 1555 1555 2.07 SSBOND 7 CYS B 7 CYS B 16 1555 1555 1.98 SSBOND 8 CYS B 110 CYS B 111 1555 1555 2.18 SSBOND 9 CYS B 164 CYS B 198 1555 1555 2.03 SSBOND 10 CYS B 166 CYS B 218 1555 1555 2.07 SSBOND 11 CYS C 3 CYS C 9 1555 1555 2.07 SSBOND 12 CYS C 7 CYS C 16 1555 1555 2.03 SSBOND 13 CYS C 110 CYS C 111 1555 1555 2.25 SSBOND 14 CYS C 164 CYS C 198 1555 1555 2.02 SSBOND 15 CYS C 166 CYS C 218 1555 1555 2.08 SSBOND 16 CYS D 3 CYS D 9 1555 1555 2.08 SSBOND 17 CYS D 7 CYS D 16 1555 1555 2.05 SSBOND 18 CYS D 110 CYS D 111 1555 1555 2.19 SSBOND 19 CYS D 164 CYS D 198 1555 1555 2.06 SSBOND 20 CYS D 166 CYS D 218 1555 1555 2.06 LINK O3 A2G E 1 C1 GAL E 2 1555 1555 1.32 LINK O3 A2G F 1 C1 GAL F 2 1555 1555 1.34 LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.29 CISPEP 1 TRP A 187 PRO A 188 0 -5.66 CISPEP 2 TRP B 187 PRO B 188 0 -1.44 CISPEP 3 TRP C 187 PRO C 188 0 -5.90 CISPEP 4 TRP D 187 PRO D 188 0 -0.79 CRYST1 56.680 68.680 99.920 90.00 93.58 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017643 0.000000 0.001104 0.00000 SCALE2 0.000000 0.014560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010028 0.00000